Wall clock time and date at job start Tue Mar 31 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47589 * 2 1 4 4 C 1.50696 * 109.47178 * 120.00499 * 2 1 3 5 5 O 1.21276 * 120.00518 * 119.99796 * 4 2 1 6 6 N 1.34786 * 120.00040 * 299.99339 * 4 2 1 7 7 C 1.46495 * 120.00361 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.46942 * 60.00134 * 7 6 4 9 9 C 1.52995 * 109.47104 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47221 * 300.00688 * 7 6 4 11 11 N 1.46904 * 109.46991 * 240.00011 * 2 1 3 12 12 C 1.46897 * 110.99929 * 306.04818 * 11 2 1 13 13 C 1.46905 * 111.00010 * 69.99906 * 11 2 1 14 14 C 1.50698 * 109.47044 * 170.00181 * 13 11 2 15 15 C 1.38297 * 119.93202 * 90.00061 * 14 13 11 16 16 C 1.38101 * 120.07230 * 180.02562 * 15 14 13 17 17 C 1.38886 * 119.92536 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.06440 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00075 * 5.53777 * 18 17 16 20 20 H 1.07993 * 120.00518 * 354.94289 * 19 18 17 21 21 C 1.38663 * 119.99751 * 174.94575 * 19 18 17 22 22 N 1.31556 * 120.00220 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47375 * 119.99795 * 23 21 19 26 26 H 1.48506 * 109.47301 * 239.99793 * 23 21 19 27 27 C 1.38874 * 119.86623 * 0.27854 * 17 16 15 28 28 C 1.38106 * 119.92542 * 359.44577 * 27 17 16 29 29 H 1.09000 * 109.46304 * 299.99681 * 1 2 3 30 30 H 1.08996 * 109.46889 * 59.99796 * 1 2 3 31 31 H 1.08999 * 109.46880 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99503 * 0.02562 * 6 4 2 33 33 H 1.08999 * 109.47367 * 60.00069 * 8 7 6 34 34 H 1.08997 * 109.47258 * 179.97438 * 8 7 6 35 35 H 1.09004 * 109.47310 * 299.99926 * 8 7 6 36 36 H 1.08997 * 109.46864 * 60.00634 * 9 7 6 37 37 H 1.09005 * 109.47003 * 179.97438 * 9 7 6 38 38 H 1.08993 * 109.47459 * 300.00265 * 9 7 6 39 39 H 1.08991 * 109.47373 * 59.99144 * 10 7 6 40 40 H 1.08996 * 109.47360 * 180.02562 * 10 7 6 41 41 H 1.09000 * 109.46444 * 299.99489 * 10 7 6 42 42 H 1.08999 * 109.47483 * 183.95258 * 12 11 2 43 43 H 1.09006 * 109.47284 * 303.95120 * 12 11 2 44 44 H 1.08997 * 109.47524 * 63.95352 * 12 11 2 45 45 H 1.09003 * 109.46647 * 49.99908 * 13 11 2 46 46 H 1.09004 * 109.46926 * 290.00134 * 13 11 2 47 47 H 1.07999 * 119.96698 * 0.02562 * 15 14 13 48 48 H 1.07992 * 120.03608 * 179.97438 * 16 15 14 49 49 H 0.96996 * 120.00178 * 179.97438 * 22 21 19 50 50 H 1.07996 * 120.03745 * 179.72497 * 27 17 16 51 51 H 1.07997 * 119.96326 * 180.27708 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7069 -0.2500 2.4546 7 6 2.1956 -0.9403 3.6507 8 6 3.7257 -0.9398 3.6504 9 6 1.6851 -0.2195 4.8999 10 6 1.6862 -2.3831 3.6509 11 7 2.0197 -0.6925 -1.1995 12 6 1.4343 -2.0354 -1.3078 13 6 1.7529 0.0972 -2.4091 14 6 2.4773 -0.5163 -3.5795 15 6 1.8521 -1.4797 -4.3499 16 6 2.5135 -2.0443 -5.4228 17 6 3.8077 -1.6431 -5.7280 18 8 4.4602 -2.1958 -6.7823 19 6 3.7577 -3.0431 -7.5610 20 1 2.7499 -3.3182 -7.2876 21 6 4.3294 -3.5614 -8.7132 22 7 5.5570 -3.2259 -9.0466 23 14 3.3560 -4.7347 -9.7925 24 1 2.0105 -4.9496 -9.2020 25 1 3.2135 -4.1541 -11.1518 26 1 4.0702 -6.0336 -9.8814 27 6 4.4347 -0.6793 -4.9492 28 6 3.7658 -0.1144 -3.8811 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1490 0.5384 2.5436 33 1 4.0887 0.0880 3.6502 34 1 4.0894 -1.4530 4.5406 35 1 4.0891 -1.4536 2.7604 36 1 0.5951 -0.2204 4.8999 37 1 2.0484 -0.7334 5.7899 38 1 2.0477 0.8084 4.9000 39 1 2.0495 -2.8968 2.7609 40 1 2.0495 -2.8966 4.5410 41 1 0.5962 -2.3834 3.6511 42 1 1.8663 -2.5521 -2.1649 43 1 1.6466 -2.5988 -0.3991 44 1 0.3556 -1.9520 -1.4399 45 1 2.1025 1.1189 -2.2604 46 1 0.6813 0.1053 -2.6087 47 1 0.8456 -1.7909 -4.1124 48 1 2.0249 -2.7968 -6.0238 49 1 5.9571 -3.5887 -9.8523 50 1 5.4426 -0.3685 -5.1814 51 1 4.2512 0.6384 -3.2778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776858801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:10 Heat of formation + Delta-G solvation = -31.232817 kcal Electronic energy + Delta-G solvation = -29009.655726 eV Core-core repulsion = 25103.106641 eV Total energy + Delta-G solvation = -3906.549085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.59567 -39.11618 -37.99601 -36.61691 -35.76752 -32.83495 -32.24350 -30.80620 -30.11749 -29.06694 -27.72623 -27.48642 -26.66144 -25.67153 -24.91270 -22.69770 -21.86180 -20.63066 -19.92865 -19.67567 -17.92893 -17.29746 -16.83766 -16.45006 -15.71106 -15.29848 -14.92719 -14.79978 -14.51018 -14.31344 -14.11557 -13.95468 -13.77736 -13.75465 -13.49652 -13.37320 -12.77020 -12.70795 -12.63551 -12.50450 -12.37186 -12.30823 -12.14100 -11.89682 -11.70922 -11.64878 -11.48085 -11.34840 -11.25392 -11.23591 -11.17225 -10.73914 -10.58306 -10.53476 -10.38220 -9.46678 -9.27773 -9.22872 -8.79958 -8.17321 -8.07111 -7.11094 -6.41182 -3.99663 2.28846 2.32152 2.59049 2.89775 3.14714 3.15926 3.21541 3.99835 4.05616 4.35369 4.58209 4.62356 4.71284 4.75533 4.79294 4.87407 5.14298 5.17187 5.21364 5.29259 5.32124 5.33789 5.37246 5.46255 5.48597 5.50416 5.51979 5.59694 5.67936 5.70304 5.74724 5.78195 5.84833 5.91903 5.97371 6.07935 6.14482 6.27880 6.33893 6.43415 6.48971 6.76999 6.96267 7.00922 7.13631 7.17187 7.32402 7.42102 7.46363 7.50411 7.89607 8.04302 8.20204 9.04677 9.76080 10.77085 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.002075 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.413293 B =13490.656304 C =13576.077083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.062 3.938 3 H 0.104 0.896 4 C 0.522 3.478 5 O -0.509 6.509 6 N -0.730 5.730 7 C 0.170 3.830 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.163 4.163 11 N -0.510 5.510 12 C 0.017 3.983 13 C 0.113 3.887 14 C -0.177 4.177 15 C -0.063 4.063 16 C -0.235 4.235 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.194 4.194 28 C -0.051 4.051 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.018 0.982 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.102 0.898 48 H 0.125 0.875 49 H 0.269 0.731 50 H 0.116 0.884 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 8.248 25.113 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.051 4.051 3 H 0.122 0.878 4 C 0.308 3.692 5 O -0.382 6.382 6 N -0.384 5.384 7 C 0.084 3.916 8 C -0.222 4.222 9 C -0.212 4.212 10 C -0.222 4.222 11 N -0.234 5.234 12 C -0.130 4.130 13 C -0.013 4.013 14 C -0.179 4.179 15 C -0.082 4.082 16 C -0.254 4.254 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.214 4.214 28 C -0.070 4.070 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.037 0.963 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.120 0.880 48 H 0.143 0.857 49 H 0.079 0.921 50 H 0.134 0.866 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.421 7.418 24.795 27.900 hybrid contribution -1.702 -0.099 -0.542 1.789 sum -12.123 7.319 24.252 28.084 Atomic orbital electron populations 1.22429 0.95761 1.03218 1.02883 1.21679 0.93827 0.98978 0.90602 0.87837 1.20496 0.80020 0.84727 0.84003 1.90639 1.36044 1.25428 1.86118 1.46201 1.54555 1.32291 1.05346 1.20293 0.94489 0.92608 0.84177 1.22228 0.94165 1.02181 1.03653 1.22082 1.01427 1.00757 0.96927 1.22222 1.00688 0.95635 1.03608 1.61979 1.58227 1.02881 1.00264 1.22587 0.95774 0.90400 1.04259 1.20848 0.96927 0.96021 0.87500 1.18999 0.96290 1.03499 0.99067 1.20572 0.98078 0.95237 0.94342 1.21111 0.96511 1.06084 1.01701 1.19401 0.90640 0.91088 0.88614 1.83980 1.37573 1.53394 1.33297 1.21364 0.98940 1.22595 1.03735 0.89073 1.25288 0.96346 0.98308 0.96674 1.70049 1.12937 1.42169 1.24667 0.85652 0.79121 0.79244 0.79430 1.19147 1.20187 1.20172 1.20207 1.01095 1.01017 0.99038 1.20440 0.93354 0.98110 0.95102 0.91953 0.91207 0.91526 0.77027 0.92820 0.92114 0.90012 0.92089 0.90939 0.91998 0.90171 0.92063 0.92945 0.90413 0.90246 0.96316 0.90962 0.94775 0.88007 0.85704 0.92124 0.86615 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.34 37.16 0.31 -1.11 16 2 C 0.06 0.62 2.73 -68.86 -0.19 0.43 16 3 H 0.10 0.88 7.93 -51.93 -0.41 0.47 16 4 C 0.52 5.70 6.27 -10.98 -0.07 5.64 16 5 O -0.51 -7.52 10.54 5.56 0.06 -7.46 16 6 N -0.73 -5.58 5.00 -47.61 -0.24 -5.82 16 7 C 0.17 1.29 1.06 -131.82 -0.14 1.15 16 8 C -0.16 -1.46 8.40 37.16 0.31 -1.15 16 9 C -0.15 -0.75 8.59 37.16 0.32 -0.44 16 10 C -0.16 -1.40 8.40 37.16 0.31 -1.09 16 11 N -0.51 -6.89 4.44 -237.72 -1.06 -7.94 16 12 C 0.02 0.25 8.09 60.06 0.49 0.73 16 13 C 0.11 1.53 4.69 -4.97 -0.02 1.50 16 14 C -0.18 -3.07 4.89 -104.58 -0.51 -3.58 16 15 C -0.06 -1.18 7.95 -39.61 -0.32 -1.49 16 16 C -0.23 -5.21 9.17 -39.39 -0.36 -5.57 16 17 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 18 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 19 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 23 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.19 -4.25 9.99 -39.39 -0.39 -4.64 16 28 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 29 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 30 H 0.07 0.54 6.91 -51.93 -0.36 0.18 16 31 H 0.07 0.59 6.42 -51.93 -0.33 0.26 16 32 H 0.40 1.97 7.89 -40.82 -0.32 1.64 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.99 6.17 -51.93 -0.32 0.67 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 1.27 6.16 -51.93 -0.32 0.95 16 43 H 0.08 1.19 5.82 -51.93 -0.30 0.88 16 44 H 0.02 0.23 6.46 -51.93 -0.34 -0.11 16 45 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 46 H 0.03 0.42 7.00 -51.93 -0.36 0.06 16 47 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 48 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 49 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 51 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -33.01 396.82 -8.35 -41.35 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.12 Total: 5.40 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.71 Total: -17.18 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.53 Total: -38.72 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.06 Total: -12.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.01 -8.35 -41.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776858801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.122 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds