Wall clock time and date at job start Tue Mar 31 2020 18:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47589 * 2 1 4 4 C 1.50696 * 109.47178 * 120.00499 * 2 1 3 5 5 O 1.21276 * 120.00518 * 119.99796 * 4 2 1 6 6 N 1.34786 * 120.00040 * 299.99339 * 4 2 1 7 7 C 1.46495 * 120.00361 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.46942 * 60.00134 * 7 6 4 9 9 C 1.52995 * 109.47104 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47221 * 300.00688 * 7 6 4 11 11 N 1.46904 * 109.46991 * 240.00011 * 2 1 3 12 12 C 1.46897 * 110.99929 * 306.04818 * 11 2 1 13 13 C 1.46905 * 111.00010 * 69.99906 * 11 2 1 14 14 C 1.50698 * 109.47044 * 170.00181 * 13 11 2 15 15 C 1.38297 * 119.93202 * 90.00061 * 14 13 11 16 16 C 1.38101 * 120.07230 * 180.02562 * 15 14 13 17 17 C 1.38886 * 119.92536 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.06440 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00075 * 5.53777 * 18 17 16 20 20 H 1.07993 * 120.00518 * 354.94289 * 19 18 17 21 21 C 1.38663 * 119.99751 * 174.94575 * 19 18 17 22 22 N 1.31556 * 120.00220 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47375 * 119.99795 * 23 21 19 26 26 H 1.48506 * 109.47301 * 239.99793 * 23 21 19 27 27 C 1.38874 * 119.86623 * 0.27854 * 17 16 15 28 28 C 1.38106 * 119.92542 * 359.44577 * 27 17 16 29 29 H 1.09000 * 109.46304 * 299.99681 * 1 2 3 30 30 H 1.08996 * 109.46889 * 59.99796 * 1 2 3 31 31 H 1.08999 * 109.46880 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99503 * 0.02562 * 6 4 2 33 33 H 1.08999 * 109.47367 * 60.00069 * 8 7 6 34 34 H 1.08997 * 109.47258 * 179.97438 * 8 7 6 35 35 H 1.09004 * 109.47310 * 299.99926 * 8 7 6 36 36 H 1.08997 * 109.46864 * 60.00634 * 9 7 6 37 37 H 1.09005 * 109.47003 * 179.97438 * 9 7 6 38 38 H 1.08993 * 109.47459 * 300.00265 * 9 7 6 39 39 H 1.08991 * 109.47373 * 59.99144 * 10 7 6 40 40 H 1.08996 * 109.47360 * 180.02562 * 10 7 6 41 41 H 1.09000 * 109.46444 * 299.99489 * 10 7 6 42 42 H 1.08999 * 109.47483 * 183.95258 * 12 11 2 43 43 H 1.09006 * 109.47284 * 303.95120 * 12 11 2 44 44 H 1.08997 * 109.47524 * 63.95352 * 12 11 2 45 45 H 1.09003 * 109.46647 * 49.99908 * 13 11 2 46 46 H 1.09004 * 109.46926 * 290.00134 * 13 11 2 47 47 H 1.07999 * 119.96698 * 0.02562 * 15 14 13 48 48 H 1.07992 * 120.03608 * 179.97438 * 16 15 14 49 49 H 0.96996 * 120.00178 * 179.97438 * 22 21 19 50 50 H 1.07996 * 120.03745 * 179.72497 * 27 17 16 51 51 H 1.07997 * 119.96326 * 180.27708 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7069 -0.2500 2.4546 7 6 2.1956 -0.9403 3.6507 8 6 3.7257 -0.9398 3.6504 9 6 1.6851 -0.2195 4.8999 10 6 1.6862 -2.3831 3.6509 11 7 2.0197 -0.6925 -1.1995 12 6 1.4343 -2.0354 -1.3078 13 6 1.7529 0.0972 -2.4091 14 6 2.4773 -0.5163 -3.5795 15 6 1.8521 -1.4797 -4.3499 16 6 2.5135 -2.0443 -5.4228 17 6 3.8077 -1.6431 -5.7280 18 8 4.4602 -2.1958 -6.7823 19 6 3.7577 -3.0431 -7.5610 20 1 2.7499 -3.3182 -7.2876 21 6 4.3294 -3.5614 -8.7132 22 7 5.5570 -3.2259 -9.0466 23 14 3.3560 -4.7347 -9.7925 24 1 2.0105 -4.9496 -9.2020 25 1 3.2135 -4.1541 -11.1518 26 1 4.0702 -6.0336 -9.8814 27 6 4.4347 -0.6793 -4.9492 28 6 3.7658 -0.1144 -3.8811 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1490 0.5384 2.5436 33 1 4.0887 0.0880 3.6502 34 1 4.0894 -1.4530 4.5406 35 1 4.0891 -1.4536 2.7604 36 1 0.5951 -0.2204 4.8999 37 1 2.0484 -0.7334 5.7899 38 1 2.0477 0.8084 4.9000 39 1 2.0495 -2.8968 2.7609 40 1 2.0495 -2.8966 4.5410 41 1 0.5962 -2.3834 3.6511 42 1 1.8663 -2.5521 -2.1649 43 1 1.6466 -2.5988 -0.3991 44 1 0.3556 -1.9520 -1.4399 45 1 2.1025 1.1189 -2.2604 46 1 0.6813 0.1053 -2.6087 47 1 0.8456 -1.7909 -4.1124 48 1 2.0249 -2.7968 -6.0238 49 1 5.9571 -3.5887 -9.8523 50 1 5.4426 -0.3685 -5.1814 51 1 4.2512 0.6384 -3.2778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776858801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:09 Heat of formation + Delta-G solvation = -54.035681 kcal Electronic energy + Delta-G solvation = -29010.644533 eV Core-core repulsion = 25103.106641 eV Total energy + Delta-G solvation = -3907.537892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42994 -40.76704 -39.18895 -37.90638 -36.85570 -34.35190 -33.57962 -31.95960 -31.75740 -30.17904 -28.21175 -28.18758 -27.96599 -27.32464 -26.08638 -23.83027 -23.53670 -21.93371 -20.91710 -20.41642 -19.82677 -18.81351 -18.06063 -17.27554 -16.54956 -16.45247 -16.41252 -16.17292 -15.73155 -15.50163 -15.40687 -15.26066 -14.96174 -14.85371 -14.59956 -14.46598 -14.33990 -14.02144 -13.61728 -13.36436 -13.32809 -13.11537 -12.99014 -12.96233 -12.88402 -12.61986 -12.58842 -12.47552 -12.39226 -12.34621 -12.11818 -12.11086 -12.00225 -11.92859 -11.86692 -11.15729 -10.80115 -10.32804 -9.95875 -9.73758 -9.17223 -8.84328 -8.47152 -6.15108 0.62694 0.69243 1.33853 1.42452 1.52517 1.79759 2.17324 2.18197 2.78854 3.07368 3.35676 3.53976 3.73602 3.95200 3.99790 4.03376 4.05448 4.15011 4.18288 4.22908 4.27182 4.39679 4.51218 4.60337 4.64674 4.71578 4.73929 4.75532 4.80572 4.82059 4.85210 4.88651 4.89928 4.99057 5.03383 5.10943 5.15588 5.20364 5.24899 5.25538 5.32867 5.40439 5.42355 5.59408 5.72842 5.73990 5.81935 6.03563 6.12202 6.14449 6.27698 6.77322 6.97543 7.47503 7.79656 8.76565 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.002075 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.413293 B =13490.656304 C =13576.077083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 H 0.127 0.873 4 C 0.517 3.483 5 O -0.555 6.555 6 N -0.713 5.713 7 C 0.167 3.833 8 C -0.161 4.161 9 C -0.147 4.147 10 C -0.160 4.160 11 N -0.532 5.532 12 C 0.026 3.974 13 C 0.117 3.883 14 C -0.152 4.152 15 C -0.059 4.059 16 C -0.244 4.244 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.252 1.252 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.208 4.208 28 C -0.048 4.048 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.412 0.588 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.098 0.902 46 H 0.057 0.943 47 H 0.134 0.866 48 H 0.116 0.884 49 H 0.272 0.728 50 H 0.110 0.890 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 10.288 28.160 33.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.048 4.048 3 H 0.145 0.855 4 C 0.303 3.697 5 O -0.432 6.432 6 N -0.368 5.368 7 C 0.081 3.919 8 C -0.220 4.220 9 C -0.204 4.204 10 C -0.218 4.218 11 N -0.256 5.256 12 C -0.122 4.122 13 C -0.010 4.010 14 C -0.153 4.153 15 C -0.078 4.078 16 C -0.263 4.263 17 C 0.063 3.937 18 O -0.141 6.141 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.223 4.223 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.227 4.227 28 C -0.066 4.066 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.249 0.751 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.117 0.883 46 H 0.075 0.925 47 H 0.152 0.848 48 H 0.134 0.866 49 H 0.081 0.919 50 H 0.128 0.872 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.903 9.520 27.921 32.611 hybrid contribution -0.706 -0.555 -1.106 1.425 sum -14.609 8.965 26.815 31.825 Atomic orbital electron populations 1.22381 0.93512 1.02924 1.04760 1.21775 0.95497 0.99218 0.88353 0.85532 1.20793 0.79487 0.84220 0.85190 1.90649 1.38223 1.27518 1.86823 1.46069 1.53847 1.32399 1.04474 1.20376 0.93593 0.92518 0.85376 1.22182 0.95394 1.02038 1.02344 1.22028 1.02178 1.00933 0.95269 1.22172 1.01060 0.96226 1.02374 1.61791 1.59497 1.02803 1.01461 1.22404 0.96767 0.90732 1.02251 1.20883 0.97682 0.96646 0.85747 1.19588 0.95540 1.01072 0.99104 1.20911 0.99294 0.94730 0.92855 1.21209 0.95847 1.06339 1.02934 1.19938 0.92251 0.92748 0.88769 1.83941 1.39321 1.55451 1.35410 1.21850 0.99548 1.23018 1.04386 0.88217 1.26619 0.97528 1.00189 0.97938 1.70195 1.15228 1.44720 1.25865 0.84513 0.77925 0.76490 0.77153 1.17507 1.19173 1.19389 1.20459 1.01324 1.00984 0.99940 1.20845 0.93827 0.98075 0.93901 0.89055 0.90401 0.92855 0.75050 0.92286 0.91055 0.93706 0.90816 0.90226 0.90913 0.93654 0.91071 0.92158 0.93280 0.91634 0.94272 0.88325 0.92525 0.84819 0.86611 0.91867 0.87192 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.34 71.98 0.60 -1.31 16 2 C 0.06 1.02 2.73 44.17 0.12 1.14 16 3 H 0.13 1.50 7.93 -2.39 -0.02 1.48 16 4 C 0.52 10.23 6.27 87.65 0.55 10.78 16 5 O -0.55 -16.40 10.54 -3.02 -0.03 -16.43 16 6 N -0.71 -8.85 5.00 -422.93 -2.11 -10.97 16 7 C 0.17 2.17 1.06 3.60 0.00 2.18 16 8 C -0.16 -2.71 8.40 71.98 0.60 -2.11 16 9 C -0.15 -0.90 8.59 71.98 0.62 -0.28 16 10 C -0.16 -2.56 8.40 71.98 0.60 -1.95 16 11 N -0.53 -12.74 4.44 -906.02 -4.02 -16.77 16 12 C 0.03 0.70 8.09 127.69 1.03 1.73 16 13 C 0.12 2.62 4.69 85.56 0.40 3.02 16 14 C -0.15 -4.88 4.89 -19.84 -0.10 -4.97 16 15 C -0.06 -2.12 7.95 22.25 0.18 -1.94 16 16 C -0.24 -11.10 9.17 22.39 0.21 -10.89 16 17 C 0.11 5.91 6.65 22.58 0.15 6.06 16 18 O -0.23 -14.69 9.76 -22.72 -0.22 -14.91 16 19 C -0.41 -24.81 9.49 67.92 0.64 -24.17 16 20 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 21 C -0.03 -1.50 5.49 84.84 0.47 -1.04 16 22 N -0.92 -58.12 13.67 21.62 0.30 -57.82 16 23 Si 1.02 44.15 29.55 68.60 2.03 46.18 16 24 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 C -0.21 -9.38 9.99 22.39 0.22 -9.15 16 28 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 29 H 0.09 0.47 7.56 -2.39 -0.02 0.46 16 30 H 0.08 0.76 6.91 -2.39 -0.02 0.75 16 31 H 0.05 0.75 6.42 -2.39 -0.02 0.73 16 32 H 0.41 2.31 7.89 -92.71 -0.73 1.58 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.04 1.11 6.17 -2.39 -0.01 1.09 16 36 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.04 1.07 6.17 -2.39 -0.01 1.05 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 1.56 6.16 -2.39 -0.01 1.54 16 43 H 0.07 1.95 5.82 -2.38 -0.01 1.93 16 44 H 0.04 0.86 6.46 -2.39 -0.02 0.84 16 45 H 0.10 1.78 7.87 -2.39 -0.02 1.77 16 46 H 0.06 1.08 7.00 -2.39 -0.02 1.06 16 47 H 0.13 3.91 8.03 -2.91 -0.02 3.88 16 48 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 49 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 50 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 51 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -80.31 396.82 2.66 -77.66 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.20 Total: 27.46 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 6.52 Total: -34.39 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -5.84 Total: -85.55 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.25 Total: -31.35 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -80.31 2.66 -77.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776858801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.620 kcal (2) G-P(sol) polarization free energy of solvation -80.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds