Wall clock time and date at job start Tue Mar 31 2020 18:00:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.08997 * 109.47340 * 2 1
4 4 C 1.50705 * 109.47301 * 239.99576 * 2 1 3
5 5 O 1.21274 * 120.00549 * 268.74478 * 4 2 1
6 6 N 1.34785 * 119.99546 * 88.74836 * 4 2 1
7 7 C 1.46494 * 119.99979 * 355.81506 * 6 4 2
8 8 C 1.46496 * 119.99787 * 175.82028 * 6 4 2
9 9 C 1.50694 * 109.47684 * 89.99541 * 8 6 4
10 10 H 1.08003 * 119.99598 * 0.02562 * 9 8 6
11 11 C 1.37871 * 120.00370 * 179.97438 * 9 8 6
12 12 N 1.31511 * 119.99780 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 120.00035 * 179.97438 * 11 9 8
14 14 H 1.48495 * 109.47025 * 60.00572 * 13 11 9
15 15 H 1.48502 * 109.46742 * 180.02562 * 13 11 9
16 16 H 1.48499 * 109.47490 * 300.00332 * 13 11 9
17 17 N 1.46906 * 109.47207 * 120.00092 * 2 1 3
18 18 C 1.46892 * 111.00171 * 180.71857 * 17 2 1
19 19 C 1.46898 * 110.99689 * 304.67519 * 17 2 1
20 20 C 1.53000 * 109.47206 * 174.52462 * 19 17 2
21 21 C 1.52999 * 109.47050 * 84.53082 * 20 19 17
22 22 O 1.42904 * 109.47145 * 324.53318 * 20 19 17
23 23 C 1.50703 * 109.47433 * 204.53042 * 20 19 17
24 24 C 1.38227 * 119.99561 * 329.73021 * 23 20 19
25 25 C 1.38242 * 119.99772 * 179.80833 * 24 23 20
26 26 C 1.38237 * 119.99786 * 0.39717 * 25 24 23
27 27 C 1.38235 * 119.99911 * 359.85263 * 26 25 24
28 28 C 1.38230 * 119.99866 * 149.99928 * 23 20 19
29 29 H 1.09007 * 109.47103 * 177.63859 * 1 2 3
30 30 H 1.08998 * 109.47010 * 57.64164 * 1 2 3
31 31 H 1.09001 * 109.47509 * 297.64179 * 1 2 3
32 32 H 1.08996 * 109.47344 * 94.62373 * 7 6 4
33 33 H 1.09005 * 109.47132 * 214.62854 * 7 6 4
34 34 H 1.09007 * 109.47175 * 334.62276 * 7 6 4
35 35 H 1.08999 * 109.46607 * 209.99879 * 8 6 4
36 36 H 1.09002 * 109.47072 * 329.99121 * 8 6 4
37 37 H 0.97002 * 119.99743 * 180.02562 * 12 11 9
38 38 H 1.08997 * 109.47312 * 75.98123 * 18 17 2
39 39 H 1.09003 * 109.47012 * 195.97744 * 18 17 2
40 40 H 1.09002 * 109.47252 * 315.97440 * 18 17 2
41 41 H 1.09002 * 109.47047 * 294.52047 * 19 17 2
42 42 H 1.09003 * 109.47387 * 54.52666 * 19 17 2
43 43 H 1.09001 * 109.47185 * 63.13861 * 21 20 19
44 44 H 1.09002 * 109.47100 * 183.13525 * 21 20 19
45 45 H 1.09000 * 109.47146 * 303.13474 * 21 20 19
46 46 H 0.96706 * 113.99634 * 299.99899 * 22 20 19
47 47 H 1.07998 * 120.00465 * 359.97438 * 24 23 20
48 48 H 1.07994 * 120.00403 * 180.22651 * 25 24 23
49 49 H 1.07998 * 119.99886 * 179.83531 * 26 25 24
50 50 H 1.07996 * 119.99971 * 179.97438 * 27 26 25
51 51 H 1.08000 * 120.00141 * 359.97438 * 28 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2304
5 8 2.2562 -1.9019 -1.1939
6 7 2.2329 -0.0218 -2.3715
7 6 1.8763 1.3973 -2.4429
8 6 2.8074 -0.6924 -3.5404
9 6 1.6999 -1.2724 -4.3818
10 1 0.6708 -1.1530 -4.0765
11 6 2.0001 -1.9545 -5.5417
12 7 3.2532 -2.0994 -5.9136
13 14 0.6272 -2.6740 -6.5842
14 1 -0.2768 -1.5846 -7.0326
15 1 1.2097 -3.3537 -7.7691
16 1 -0.1427 -3.6563 -5.7794
17 7 2.0196 -0.6925 1.1995
18 6 3.4879 -0.6973 1.2421
19 6 1.4595 -0.0940 2.4184
20 6 1.8811 -0.9225 3.6336
21 6 3.2679 -0.4748 4.0997
22 8 1.9222 -2.3055 3.2762
23 6 0.8872 -0.7210 4.7484
24 6 0.2125 0.4799 4.8640
25 6 -0.7022 0.6633 5.8842
26 6 -0.9359 -0.3512 6.7936
27 6 -0.2572 -1.5503 6.6810
28 6 0.6545 -1.7350 5.6585
29 1 -0.3634 -1.0269 -0.0423
30 1 -0.3633 0.5500 -0.8681
31 1 -0.3634 0.4768 0.9104
32 1 2.7543 2.0041 -2.2217
33 1 1.5158 1.6314 -3.4446
34 1 1.0934 1.6122 -1.7156
35 1 3.3731 0.0282 -4.1310
36 1 3.4704 -1.4924 -3.2109
37 1 3.4644 -2.5790 -6.7299
38 1 3.8460 0.2882 1.5397
39 1 3.8281 -1.4405 1.9632
40 1 3.8793 -0.9432 0.2549
41 1 1.8312 0.9250 2.5267
42 1 0.3718 -0.0786 2.3489
43 1 3.2239 0.5647 4.4250
44 1 3.5920 -1.1019 4.9303
45 1 3.9757 -0.5682 3.2761
46 1 1.0752 -2.6580 2.9705
47 1 0.3978 1.2738 4.1557
48 1 -1.2321 1.6001 5.9725
49 1 -1.6485 -0.2070 7.5922
50 1 -0.4395 -2.3427 7.3917
51 1 1.1847 -2.6718 5.5705
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000823585974.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:00:31
Heat of formation + Delta-G solvation = -31.291433 kcal
Electronic energy + Delta-G solvation = -29966.589520 eV
Core-core repulsion = 26060.037893 eV
Total energy + Delta-G solvation = -3906.551627 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.42562 -39.36708 -37.81576 -35.82300 -34.68464 -32.81293 -32.48809 -31.14696
-31.11158 -29.26126 -28.16792 -27.46743 -25.84160 -24.46299 -23.71278 -23.15638
-22.52507 -21.11510 -20.14149 -18.28476 -17.78286 -16.78051 -16.50816 -16.37233
-15.97983 -15.51860 -15.09444 -15.01239 -14.84886 -14.44437 -14.09801 -13.93061
-13.79108 -13.47202 -13.43629 -13.06826 -12.93631 -12.63925 -12.50947 -12.41409
-12.16385 -12.08905 -11.95478 -11.78232 -11.62471 -11.50076 -11.32863 -11.25503
-11.11020 -10.92398 -10.86353 -10.62016 -10.53647 -10.12286 -9.91926 -9.60369
-9.17036 -9.01995 -8.74477 -8.40290 -8.10302 -7.58900 -6.01061 -4.05486
1.06544 1.14944 3.33855 3.38397 3.39348 3.42514 3.51534 3.63771
4.13979 4.30337 4.43681 4.47722 4.61036 4.74855 4.81189 4.85126
4.93814 5.01076 5.22264 5.25826 5.28473 5.32052 5.33829 5.34205
5.48268 5.58224 5.59548 5.65044 5.69081 5.73347 5.77075 5.80091
5.81125 5.89042 5.93665 5.99194 6.18192 6.20496 6.25964 6.30791
6.34524 6.36763 6.73573 6.96924 7.13263 7.17654 7.46388 7.58797
7.74881 7.95522 8.26979 8.47008 8.94388 9.18164 9.59494 11.07015
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.021070 B = 0.002507 C = 0.002477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1328.568436 B =11167.917272 C =11303.558294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.063 3.937
3 H 0.052 0.948
4 C 0.510 3.490
5 O -0.516 6.516
6 N -0.606 5.606
7 C 0.082 3.918
8 C 0.248 3.752
9 C -0.524 4.524
10 H 0.056 0.944
11 C 0.060 3.940
12 N -0.896 5.896
13 Si 0.898 3.102
14 H -0.277 1.277
15 H -0.286 1.286
16 H -0.276 1.276
17 N -0.502 5.502
18 C 0.021 3.979
19 C 0.025 3.975
20 C 0.179 3.821
21 C -0.154 4.154
22 O -0.534 6.534
23 C -0.110 4.110
24 C -0.113 4.113
25 C -0.122 4.122
26 C -0.123 4.123
27 C -0.122 4.122
28 C -0.101 4.101
29 H 0.072 0.928
30 H 0.066 0.934
31 H 0.061 0.939
32 H 0.042 0.958
33 H 0.072 0.928
34 H 0.057 0.943
35 H 0.031 0.969
36 H 0.042 0.958
37 H 0.263 0.737
38 H 0.019 0.981
39 H 0.086 0.914
40 H 0.071 0.929
41 H 0.040 0.960
42 H 0.085 0.915
43 H 0.064 0.936
44 H 0.063 0.937
45 H 0.084 0.916
46 H 0.381 0.619
47 H 0.122 0.878
48 H 0.121 0.879
49 H 0.119 0.881
50 H 0.121 0.879
51 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.703 9.201 24.435 26.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.049 4.049
3 H 0.070 0.930
4 C 0.294 3.706
5 O -0.390 6.390
6 N -0.340 5.340
7 C -0.063 4.063
8 C 0.129 3.871
9 C -0.562 4.562
10 H 0.074 0.926
11 C -0.141 4.141
12 N -0.535 5.535
13 Si 0.725 3.275
14 H -0.203 1.203
15 H -0.212 1.212
16 H -0.201 1.201
17 N -0.227 5.227
18 C -0.127 4.127
19 C -0.103 4.103
20 C 0.138 3.862
21 C -0.211 4.211
22 O -0.339 6.339
23 C -0.110 4.110
24 C -0.131 4.131
25 C -0.140 4.140
26 C -0.141 4.141
27 C -0.140 4.140
28 C -0.119 4.119
29 H 0.091 0.909
30 H 0.085 0.915
31 H 0.080 0.920
32 H 0.060 0.940
33 H 0.091 0.909
34 H 0.076 0.924
35 H 0.049 0.951
36 H 0.060 0.940
37 H 0.073 0.927
38 H 0.037 0.963
39 H 0.105 0.895
40 H 0.089 0.911
41 H 0.058 0.942
42 H 0.103 0.897
43 H 0.083 0.917
44 H 0.082 0.918
45 H 0.103 0.897
46 H 0.228 0.772
47 H 0.140 0.860
48 H 0.139 0.861
49 H 0.137 0.863
50 H 0.139 0.861
51 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -4.972 8.049 24.417 26.186
hybrid contribution -1.166 0.638 -0.777 1.540
sum -6.138 8.686 23.640 25.922
Atomic orbital electron populations
1.21838 0.92652 1.03741 1.01799 1.21720 0.96993 0.95655 0.90528
0.93006 1.20012 0.79131 0.87659 0.83749 1.90690 1.50013 1.14345
1.83970 1.48186 1.62450 1.09821 1.13557 1.21667 0.98985 0.82796
1.02803 1.19243 0.94103 0.92861 0.80921 1.21381 0.93281 1.35054
1.06529 0.92568 1.24933 0.95661 0.95949 0.97596 1.69922 1.17132
1.42170 1.24287 0.86566 0.82009 0.79369 0.79518 1.20315 1.21203
1.20142 1.61583 1.08450 1.53154 0.99498 1.22706 0.86855 0.99343
1.03749 1.23039 1.00925 0.96009 0.90369 1.19853 0.93708 0.83346
0.89329 1.22232 0.95159 1.00769 1.02950 1.86517 1.38197 1.22264
1.86940 1.20606 0.97999 0.94649 0.97783 1.21070 0.96566 0.97071
0.98438 1.21135 0.98449 0.99129 0.95266 1.21175 0.99859 0.93821
0.99210 1.21178 0.96894 0.97499 0.98412 1.21053 0.97672 0.99245
0.93950 0.90880 0.91496 0.92045 0.93987 0.90874 0.92409 0.95128
0.94023 0.92703 0.96264 0.89527 0.91074 0.94229 0.89678 0.91657
0.91825 0.89705 0.77150 0.86018 0.86127 0.86272 0.86108 0.85272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.91 8.70 37.15 0.32 -1.58 16
2 C 0.06 0.96 1.62 -68.86 -0.11 0.85 16
3 H 0.05 0.71 6.82 -51.93 -0.35 0.36 16
4 C 0.51 10.70 5.55 -10.98 -0.06 10.64 16
5 O -0.52 -13.26 15.50 5.56 0.09 -13.17 16
6 N -0.61 -13.00 2.86 -182.96 -0.52 -13.52 16
7 C 0.08 1.31 9.90 59.84 0.59 1.90 16
8 C 0.25 6.57 5.15 -5.20 -0.03 6.54 16
9 C -0.52 -15.02 9.39 -34.45 -0.32 -15.35 16
10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16
11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
12 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16
13 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16
14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
17 N -0.50 -7.25 3.78 -236.29 -0.89 -8.14 16
18 C 0.02 0.31 7.60 60.06 0.46 0.76 16
19 C 0.02 0.27 3.01 -3.83 -0.01 0.26 16
20 C 0.18 1.87 0.81 -91.77 -0.07 1.80 16
21 C -0.15 -1.53 8.30 37.16 0.31 -1.22 16
22 O -0.53 -6.53 10.50 -35.23 -0.37 -6.90 16
23 C -0.11 -1.05 4.73 -104.63 -0.49 -1.54 16
24 C -0.11 -0.99 8.86 -39.58 -0.35 -1.34 16
25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16
26 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16
27 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16
28 C -0.10 -0.95 9.35 -39.58 -0.37 -1.32 16
29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
30 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16
31 H 0.06 0.64 6.08 -51.93 -0.32 0.33 16
32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
33 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16
34 H 0.06 0.76 5.18 -51.93 -0.27 0.49 16
35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16
36 H 0.04 1.24 7.48 -51.93 -0.39 0.86 16
37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
38 H 0.02 0.24 7.51 -51.93 -0.39 -0.15 16
39 H 0.09 1.25 5.42 -51.93 -0.28 0.97 16
40 H 0.07 1.27 6.25 -51.93 -0.32 0.95 16
41 H 0.04 0.40 7.59 -51.93 -0.39 0.00 16
42 H 0.09 0.89 5.18 -51.93 -0.27 0.62 16
43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
45 H 0.08 0.90 4.14 -51.93 -0.22 0.68 16
46 H 0.38 4.19 9.04 45.56 0.41 4.60 16
47 H 0.12 0.92 6.83 -52.49 -0.36 0.56 16
48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16
49 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16
50 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16
51 H 0.13 1.18 7.48 -52.49 -0.39 0.79 16
LS Contribution 396.33 15.07 5.97 5.97
Total: -1.00 -34.22 396.33 -8.69 -42.91
By element:
Atomic # 1 Polarization: 11.24 SS G_CDS: -7.25 Total: 3.99 kcal
Atomic # 6 Polarization: -0.63 SS G_CDS: -1.43 Total: -2.06 kcal
Atomic # 7 Polarization: -47.17 SS G_CDS: -0.68 Total: -47.85 kcal
Atomic # 8 Polarization: -19.79 SS G_CDS: -0.28 Total: -20.07 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -34.22 -8.69 -42.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000823585974.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.621 kcal
(2) G-P(sol) polarization free energy of solvation -34.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds