Wall clock time and date at job start Tue Mar 31 2020 18:00:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.08997 * 109.47340 * 2 1
4 4 C 1.50705 * 109.47301 * 239.99576 * 2 1 3
5 5 O 1.21274 * 120.00549 * 268.74478 * 4 2 1
6 6 N 1.34785 * 119.99546 * 88.74836 * 4 2 1
7 7 C 1.46494 * 119.99979 * 355.81506 * 6 4 2
8 8 C 1.46496 * 119.99787 * 175.82028 * 6 4 2
9 9 C 1.50694 * 109.47684 * 89.99541 * 8 6 4
10 10 H 1.08003 * 119.99598 * 0.02562 * 9 8 6
11 11 C 1.37871 * 120.00370 * 179.97438 * 9 8 6
12 12 N 1.31511 * 119.99780 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 120.00035 * 179.97438 * 11 9 8
14 14 H 1.48495 * 109.47025 * 60.00572 * 13 11 9
15 15 H 1.48502 * 109.46742 * 180.02562 * 13 11 9
16 16 H 1.48499 * 109.47490 * 300.00332 * 13 11 9
17 17 N 1.46906 * 109.47207 * 120.00092 * 2 1 3
18 18 C 1.46892 * 111.00171 * 180.71857 * 17 2 1
19 19 C 1.46898 * 110.99689 * 304.67519 * 17 2 1
20 20 C 1.53000 * 109.47206 * 174.52462 * 19 17 2
21 21 C 1.52999 * 109.47050 * 84.53082 * 20 19 17
22 22 O 1.42904 * 109.47145 * 324.53318 * 20 19 17
23 23 C 1.50703 * 109.47433 * 204.53042 * 20 19 17
24 24 C 1.38227 * 119.99561 * 329.73021 * 23 20 19
25 25 C 1.38242 * 119.99772 * 179.80833 * 24 23 20
26 26 C 1.38237 * 119.99786 * 0.39717 * 25 24 23
27 27 C 1.38235 * 119.99911 * 359.85263 * 26 25 24
28 28 C 1.38230 * 119.99866 * 149.99928 * 23 20 19
29 29 H 1.09007 * 109.47103 * 177.63859 * 1 2 3
30 30 H 1.08998 * 109.47010 * 57.64164 * 1 2 3
31 31 H 1.09001 * 109.47509 * 297.64179 * 1 2 3
32 32 H 1.08996 * 109.47344 * 94.62373 * 7 6 4
33 33 H 1.09005 * 109.47132 * 214.62854 * 7 6 4
34 34 H 1.09007 * 109.47175 * 334.62276 * 7 6 4
35 35 H 1.08999 * 109.46607 * 209.99879 * 8 6 4
36 36 H 1.09002 * 109.47072 * 329.99121 * 8 6 4
37 37 H 0.97002 * 119.99743 * 180.02562 * 12 11 9
38 38 H 1.08997 * 109.47312 * 75.98123 * 18 17 2
39 39 H 1.09003 * 109.47012 * 195.97744 * 18 17 2
40 40 H 1.09002 * 109.47252 * 315.97440 * 18 17 2
41 41 H 1.09002 * 109.47047 * 294.52047 * 19 17 2
42 42 H 1.09003 * 109.47387 * 54.52666 * 19 17 2
43 43 H 1.09001 * 109.47185 * 63.13861 * 21 20 19
44 44 H 1.09002 * 109.47100 * 183.13525 * 21 20 19
45 45 H 1.09000 * 109.47146 * 303.13474 * 21 20 19
46 46 H 0.96706 * 113.99634 * 299.99899 * 22 20 19
47 47 H 1.07998 * 120.00465 * 359.97438 * 24 23 20
48 48 H 1.07994 * 120.00403 * 180.22651 * 25 24 23
49 49 H 1.07998 * 119.99886 * 179.83531 * 26 25 24
50 50 H 1.07996 * 119.99971 * 179.97438 * 27 26 25
51 51 H 1.08000 * 120.00141 * 359.97438 * 28 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2304
5 8 2.2562 -1.9019 -1.1939
6 7 2.2329 -0.0218 -2.3715
7 6 1.8763 1.3973 -2.4429
8 6 2.8074 -0.6924 -3.5404
9 6 1.6999 -1.2724 -4.3818
10 1 0.6708 -1.1530 -4.0765
11 6 2.0001 -1.9545 -5.5417
12 7 3.2532 -2.0994 -5.9136
13 14 0.6272 -2.6740 -6.5842
14 1 -0.2768 -1.5846 -7.0326
15 1 1.2097 -3.3537 -7.7691
16 1 -0.1427 -3.6563 -5.7794
17 7 2.0196 -0.6925 1.1995
18 6 3.4879 -0.6973 1.2421
19 6 1.4595 -0.0940 2.4184
20 6 1.8811 -0.9225 3.6336
21 6 3.2679 -0.4748 4.0997
22 8 1.9222 -2.3055 3.2762
23 6 0.8872 -0.7210 4.7484
24 6 0.2125 0.4799 4.8640
25 6 -0.7022 0.6633 5.8842
26 6 -0.9359 -0.3512 6.7936
27 6 -0.2572 -1.5503 6.6810
28 6 0.6545 -1.7350 5.6585
29 1 -0.3634 -1.0269 -0.0423
30 1 -0.3633 0.5500 -0.8681
31 1 -0.3634 0.4768 0.9104
32 1 2.7543 2.0041 -2.2217
33 1 1.5158 1.6314 -3.4446
34 1 1.0934 1.6122 -1.7156
35 1 3.3731 0.0282 -4.1310
36 1 3.4704 -1.4924 -3.2109
37 1 3.4644 -2.5790 -6.7299
38 1 3.8460 0.2882 1.5397
39 1 3.8281 -1.4405 1.9632
40 1 3.8793 -0.9432 0.2549
41 1 1.8312 0.9250 2.5267
42 1 0.3718 -0.0786 2.3489
43 1 3.2239 0.5647 4.4250
44 1 3.5920 -1.1019 4.9303
45 1 3.9757 -0.5682 3.2761
46 1 1.0752 -2.6580 2.9705
47 1 0.3978 1.2738 4.1557
48 1 -1.2321 1.6001 5.9725
49 1 -1.6485 -0.2070 7.5922
50 1 -0.4395 -2.3427 7.3917
51 1 1.1847 -2.6718 5.5705
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000823585974.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:00:29
Heat of formation + Delta-G solvation = -55.274933 kcal
Electronic energy + Delta-G solvation = -29967.629523 eV
Core-core repulsion = 26060.037893 eV
Total energy + Delta-G solvation = -3907.591630 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.66 seconds
Orbital eigenvalues (eV)
-41.40695 -40.60803 -38.78588 -36.96160 -36.44422 -34.74471 -33.53325 -32.25194
-31.71818 -30.09372 -29.79190 -28.70174 -27.36400 -25.85367 -25.02618 -24.11339
-23.40887 -22.30494 -20.96454 -19.78691 -18.68730 -18.59028 -18.06581 -17.50508
-17.03290 -16.68915 -16.48515 -16.19211 -15.88160 -15.62173 -15.43669 -15.03066
-14.76464 -14.51581 -14.44112 -14.21945 -13.98751 -13.93836 -13.65711 -13.51235
-13.43084 -13.25400 -13.20612 -13.14371 -12.90381 -12.73440 -12.69175 -12.56388
-12.39712 -12.30561 -12.18247 -11.97125 -11.90255 -11.72080 -11.45680 -10.80059
-10.64249 -10.39188 -9.77719 -9.64449 -9.39660 -9.17383 -8.21877 -6.36650
0.44596 0.54045 1.35739 1.40801 1.47795 1.85552 2.21927 2.41501
2.89031 2.89931 3.07350 3.47424 3.60236 3.72865 3.84198 4.05095
4.08582 4.12595 4.18926 4.21168 4.33033 4.36512 4.39024 4.48691
4.61747 4.65869 4.68006 4.69301 4.72113 4.76174 4.84042 4.87651
4.91930 4.95882 5.01628 5.06685 5.12043 5.20433 5.21511 5.24527
5.33379 5.56451 5.60620 5.66780 5.69368 5.83329 5.97501 6.06909
6.11200 6.15073 6.71032 6.82796 6.90647 7.29630 7.55408 8.84953
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.021070 B = 0.002507 C = 0.002477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1328.568436 B =11167.917272 C =11303.558294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.076 3.924
3 H 0.081 0.919
4 C 0.502 3.498
5 O -0.577 6.577
6 N -0.615 5.615
7 C 0.076 3.924
8 C 0.263 3.737
9 C -0.540 4.540
10 H 0.052 0.948
11 C 0.006 3.994
12 N -0.930 5.930
13 Si 0.967 3.033
14 H -0.258 1.258
15 H -0.278 1.278
16 H -0.279 1.279
17 N -0.521 5.521
18 C 0.030 3.970
19 C 0.030 3.970
20 C 0.180 3.820
21 C -0.154 4.154
22 O -0.553 6.553
23 C -0.118 4.118
24 C -0.119 4.119
25 C -0.125 4.125
26 C -0.127 4.127
27 C -0.130 4.130
28 C -0.117 4.117
29 H 0.047 0.953
30 H 0.074 0.926
31 H 0.100 0.900
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.094 0.906
35 H 0.023 0.977
36 H -0.007 1.007
37 H 0.267 0.733
38 H 0.045 0.955
39 H 0.083 0.917
40 H 0.029 0.971
41 H 0.061 0.939
42 H 0.095 0.905
43 H 0.083 0.917
44 H 0.057 0.943
45 H 0.075 0.925
46 H 0.382 0.618
47 H 0.137 0.863
48 H 0.143 0.857
49 H 0.140 0.860
50 H 0.134 0.866
51 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.115 11.782 25.968 29.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.035 4.035
3 H 0.099 0.901
4 C 0.290 3.710
5 O -0.455 6.455
6 N -0.347 5.347
7 C -0.066 4.066
8 C 0.141 3.859
9 C -0.578 4.578
10 H 0.071 0.929
11 C -0.193 4.193
12 N -0.569 5.569
13 Si 0.791 3.209
14 H -0.183 1.183
15 H -0.203 1.203
16 H -0.204 1.204
17 N -0.247 5.247
18 C -0.117 4.117
19 C -0.097 4.097
20 C 0.139 3.861
21 C -0.211 4.211
22 O -0.359 6.359
23 C -0.119 4.119
24 C -0.137 4.137
25 C -0.143 4.143
26 C -0.145 4.145
27 C -0.148 4.148
28 C -0.135 4.135
29 H 0.067 0.933
30 H 0.092 0.908
31 H 0.118 0.882
32 H 0.085 0.915
33 H 0.085 0.915
34 H 0.113 0.887
35 H 0.041 0.959
36 H 0.011 0.989
37 H 0.076 0.924
38 H 0.063 0.937
39 H 0.101 0.899
40 H 0.048 0.952
41 H 0.079 0.921
42 H 0.113 0.887
43 H 0.102 0.898
44 H 0.076 0.924
45 H 0.093 0.907
46 H 0.230 0.770
47 H 0.155 0.845
48 H 0.161 0.839
49 H 0.158 0.842
50 H 0.152 0.848
51 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -7.399 10.691 25.971 29.044
hybrid contribution -0.374 -0.166 -1.168 1.237
sum -7.773 10.526 24.803 28.043
Atomic orbital electron populations
1.21858 0.90735 1.02835 1.04142 1.21624 0.98167 0.95868 0.87874
0.90114 1.21123 0.77646 0.87246 0.85029 1.90650 1.52501 1.17323
1.85070 1.48217 1.62109 1.12009 1.12379 1.21966 1.01274 0.79582
1.03783 1.18691 0.93155 0.91640 0.82412 1.21651 0.93446 1.35589
1.07143 0.92936 1.25876 0.98268 0.96174 0.98977 1.70047 1.19227
1.42797 1.24869 0.85475 0.78911 0.78821 0.77656 1.18272 1.20330
1.20436 1.61491 1.08186 1.54459 1.00524 1.22570 0.87398 1.00620
1.01136 1.23103 1.01284 0.96804 0.88546 1.19911 0.94302 0.82308
0.89590 1.22238 0.94735 1.01752 1.02355 1.86504 1.38593 1.23687
1.87122 1.20513 0.98370 0.95362 0.97632 1.21267 0.96497 0.96895
0.99059 1.21455 0.98116 1.00001 0.94742 1.21496 0.99846 0.93449
0.99701 1.21405 0.96632 0.98394 0.98353 1.21102 0.98426 0.99173
0.94775 0.93343 0.90765 0.88153 0.91504 0.91484 0.88708 0.95941
0.98899 0.92431 0.93655 0.89856 0.95242 0.92057 0.88663 0.89846
0.92388 0.90659 0.76973 0.84528 0.83941 0.84223 0.84794 0.86145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.31 8.70 71.98 0.63 -2.69 16
2 C 0.08 2.20 1.62 44.17 0.07 2.27 16
3 H 0.08 1.89 6.82 -2.39 -0.02 1.87 16
4 C 0.50 21.47 5.55 87.66 0.49 21.96 16
5 O -0.58 -31.37 15.50 -3.01 -0.05 -31.41 16
6 N -0.61 -26.69 2.86 -851.15 -2.43 -29.12 16
7 C 0.08 2.29 9.90 127.77 1.27 3.55 16
8 C 0.26 14.57 5.15 85.63 0.44 15.01 16
9 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16
10 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16
11 C 0.01 0.34 5.46 84.65 0.46 0.80 16
12 N -0.93 -57.41 13.29 21.44 0.28 -57.13 16
13 Si 0.97 45.76 29.54 68.60 2.03 47.79 16
14 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16
15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16
17 N -0.52 -14.49 3.78 -901.48 -3.41 -17.90 16
18 C 0.03 0.89 7.60 127.69 0.97 1.86 16
19 C 0.03 0.57 3.01 86.30 0.26 0.83 16
20 C 0.18 3.51 0.81 -11.54 -0.01 3.51 16
21 C -0.15 -2.85 8.30 71.98 0.60 -2.25 16
22 O -0.55 -13.70 10.50 -148.98 -1.56 -15.27 16
23 C -0.12 -2.05 4.73 -19.87 -0.09 -2.15 16
24 C -0.12 -1.70 8.86 22.27 0.20 -1.50 16
25 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16
26 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16
27 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16
28 C -0.12 -2.09 9.35 22.27 0.21 -1.88 16
29 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16
30 H 0.07 1.67 6.96 -2.39 -0.02 1.65 16
31 H 0.10 1.63 6.08 -2.39 -0.01 1.62 16
32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
33 H 0.07 2.11 8.11 -2.38 -0.02 2.09 16
34 H 0.09 2.14 5.18 -2.38 -0.01 2.12 16
35 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16
36 H -0.01 -0.46 7.48 -2.39 -0.02 -0.48 16
37 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16
38 H 0.05 1.06 7.51 -2.39 -0.02 1.04 16
39 H 0.08 2.47 5.42 -2.39 -0.01 2.46 16
40 H 0.03 1.09 6.25 -2.39 -0.01 1.08 16
41 H 0.06 0.94 7.59 -2.39 -0.02 0.92 16
42 H 0.10 1.63 5.18 -2.39 -0.01 1.62 16
43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
45 H 0.07 1.53 4.14 -2.39 -0.01 1.52 16
46 H 0.38 8.68 9.04 -74.05 -0.67 8.01 16
47 H 0.14 1.47 6.83 -2.91 -0.02 1.45 16
48 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16
49 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16
50 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16
51 H 0.12 2.27 7.48 -2.91 -0.02 2.24 16
Total: -1.00 -79.18 396.33 1.52 -77.66
By element:
Atomic # 1 Polarization: 21.85 SS G_CDS: 0.27 Total: 22.12 kcal
Atomic # 6 Polarization: -3.13 SS G_CDS: 6.39 Total: 3.26 kcal
Atomic # 7 Polarization: -98.60 SS G_CDS: -5.55 Total: -104.15 kcal
Atomic # 8 Polarization: -45.07 SS G_CDS: -1.61 Total: -46.68 kcal
Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal
Total: -79.18 1.52 -77.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000823585974.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.386 kcal
(2) G-P(sol) polarization free energy of solvation -79.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.794 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.661 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.275 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.66 seconds