Wall clock time and date at job start Tue Mar 31 2020 18:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47243 * 2 1 4 4 C 1.50706 * 109.47375 * 240.00209 * 2 1 3 5 5 O 1.21286 * 119.99789 * 267.22756 * 4 2 1 6 6 N 1.34777 * 119.99762 * 87.22747 * 4 2 1 7 7 C 1.46495 * 120.00118 * 4.71201 * 6 4 2 8 8 C 1.46498 * 119.99482 * 184.71595 * 6 4 2 9 9 C 1.50698 * 109.47261 * 90.00099 * 8 6 4 10 10 H 1.08002 * 119.99907 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99718 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99765 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00241 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46868 * 90.00151 * 13 11 9 15 15 H 1.48502 * 109.47099 * 209.99612 * 13 11 9 16 16 H 1.48499 * 109.47463 * 330.00155 * 13 11 9 17 17 N 1.46899 * 109.47100 * 120.00397 * 2 1 3 18 18 C 1.46901 * 111.00174 * 179.31363 * 17 2 1 19 19 C 1.46900 * 111.00057 * 303.26474 * 17 2 1 20 20 C 1.52998 * 109.47526 * 160.13518 * 19 17 2 21 21 C 1.52993 * 109.46864 * 299.18870 * 20 19 17 22 22 O 1.42904 * 109.46697 * 59.18711 * 20 19 17 23 23 C 1.50702 * 109.47127 * 179.18708 * 20 19 17 24 24 C 1.38232 * 120.00194 * 29.73040 * 23 20 19 25 25 C 1.38230 * 119.99882 * 179.76429 * 24 23 20 26 26 C 1.38233 * 120.00156 * 0.50809 * 25 24 23 27 27 C 1.38231 * 119.99973 * 359.74270 * 26 25 24 28 28 C 1.38236 * 119.99584 * 210.00360 * 23 20 19 29 29 H 1.09001 * 109.47317 * 188.21302 * 1 2 3 30 30 H 1.08997 * 109.47133 * 308.21138 * 1 2 3 31 31 H 1.08999 * 109.47316 * 68.21568 * 1 2 3 32 32 H 1.09003 * 109.46840 * 91.91640 * 7 6 4 33 33 H 1.08999 * 109.47125 * 211.91900 * 7 6 4 34 34 H 1.09001 * 109.47695 * 331.91880 * 7 6 4 35 35 H 1.09001 * 109.46756 * 209.99731 * 8 6 4 36 36 H 1.08998 * 109.47621 * 329.99638 * 8 6 4 37 37 H 0.96994 * 120.00212 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47447 * 190.72583 * 18 17 2 39 39 H 1.08999 * 109.47424 * 70.71971 * 18 17 2 40 40 H 1.09002 * 109.46981 * 310.72568 * 18 17 2 41 41 H 1.09005 * 109.47121 * 280.13682 * 19 17 2 42 42 H 1.08999 * 109.47238 * 40.12993 * 19 17 2 43 43 H 1.09000 * 109.47307 * 60.00014 * 21 20 19 44 44 H 1.09010 * 109.47024 * 179.97438 * 21 20 19 45 45 H 1.08998 * 109.47497 * 299.99737 * 21 20 19 46 46 H 0.96699 * 113.99860 * 60.00851 * 22 20 19 47 47 H 1.08002 * 119.99704 * 359.97438 * 24 23 20 48 48 H 1.08007 * 119.99908 * 180.22933 * 25 24 23 49 49 H 1.07999 * 120.00006 * 179.72332 * 26 25 24 50 50 H 1.07998 * 120.00068 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.00784 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2824 -1.8964 -1.1864 6 7 2.2038 -0.0277 -2.3799 7 6 2.0012 1.4229 -2.4075 8 6 2.5926 -0.7365 -3.6016 9 6 1.3561 -1.1768 -4.3421 10 1 0.3784 -0.9516 -3.9423 11 6 1.4731 -1.8672 -5.5299 12 7 0.3940 -2.2519 -6.1758 13 14 3.1641 -2.2560 -6.2216 14 1 3.6220 -3.5691 -5.7007 15 1 3.0923 -2.3094 -7.7039 16 1 4.1224 -1.1988 -5.8102 17 7 2.0196 -0.6926 1.1994 18 6 3.4880 -0.7264 1.2252 19 6 1.4859 -0.0731 2.4198 20 6 1.5877 -1.0639 3.5812 21 6 0.7632 -2.3121 3.2605 22 8 2.9548 -1.4326 3.7742 23 6 1.0585 -0.4213 4.8375 24 6 0.0697 0.5413 4.7578 25 6 -0.4191 1.1271 5.9105 26 6 0.0884 0.7580 7.1421 27 6 1.0809 -0.2009 7.2215 28 6 1.5661 -0.7905 6.0691 29 1 -0.3634 -1.0171 0.1468 30 1 -0.3633 0.6357 0.8074 31 1 -0.3634 0.3814 -0.9543 32 1 2.9490 1.9258 -2.2154 33 1 1.6248 1.7186 -3.3868 34 1 1.2790 1.7036 -1.6408 35 1 3.1787 -0.0718 -4.2363 36 1 3.1901 -1.6099 -3.3406 37 1 0.4762 -2.7372 -7.0116 38 1 3.8221 -1.4018 2.0128 39 1 3.8712 0.2754 1.4188 40 1 3.8602 -1.0781 0.2629 41 1 2.0616 0.8223 2.6544 42 1 0.4416 0.1971 2.2633 43 1 1.1459 -2.7768 2.3518 44 1 0.8361 -3.0182 4.0878 45 1 -0.2795 -2.0308 3.1133 46 1 3.5372 -0.6890 3.9816 47 1 -0.3234 0.8332 3.7951 48 1 -1.1943 1.8766 5.8484 49 1 -0.2904 1.2189 8.0424 50 1 1.4777 -0.4890 8.1838 51 1 2.3415 -1.5397 6.1312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823585976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:34 Heat of formation + Delta-G solvation = -33.254666 kcal Electronic energy + Delta-G solvation = -29992.469172 eV Core-core repulsion = 26085.832413 eV Total energy + Delta-G solvation = -3906.636759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.43487 -39.45777 -37.86514 -35.95587 -34.82015 -32.82216 -32.53393 -31.18495 -31.01573 -29.53769 -28.48591 -27.17328 -25.93730 -24.62244 -23.89611 -23.05524 -22.41962 -21.05277 -20.14261 -18.33613 -17.78105 -16.98799 -16.86128 -16.43835 -16.00612 -15.61324 -15.14409 -14.97776 -14.88530 -14.51434 -14.26347 -13.91055 -13.87244 -13.54904 -13.19524 -13.09876 -12.86512 -12.69271 -12.37033 -12.33124 -12.21937 -12.15947 -12.09415 -11.98677 -11.67214 -11.54703 -11.48263 -11.26459 -11.18079 -11.10642 -10.91192 -10.82891 -10.50360 -10.12886 -9.94185 -9.52380 -9.20018 -9.05112 -8.85382 -8.57798 -8.12454 -7.66132 -6.07870 -4.06490 1.04056 1.12288 3.30081 3.33683 3.36110 3.38471 3.48628 3.55578 4.04866 4.12353 4.40775 4.51458 4.59378 4.72579 4.83127 4.83523 4.88524 4.99207 5.17272 5.21701 5.25102 5.26886 5.30040 5.37291 5.53621 5.56985 5.63402 5.66953 5.73013 5.78381 5.79407 5.82141 5.87884 5.91915 5.97984 6.12905 6.17817 6.23363 6.27841 6.34594 6.39492 6.45091 6.69052 6.71296 6.94203 7.08052 7.12947 7.37536 7.48903 7.62258 8.27888 8.48343 8.94311 9.04452 9.52740 11.05483 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002503 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.229216 B =11184.400485 C =11448.277903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 H 0.053 0.947 4 C 0.515 3.485 5 O -0.519 6.519 6 N -0.601 5.601 7 C 0.082 3.918 8 C 0.216 3.784 9 C -0.528 4.528 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.506 5.506 18 C 0.011 3.989 19 C 0.027 3.973 20 C 0.183 3.817 21 C -0.127 4.127 22 O -0.543 6.543 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.103 4.103 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.013 0.987 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.370 0.630 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 10.493 25.408 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.049 4.049 3 H 0.071 0.929 4 C 0.300 3.700 5 O -0.394 6.394 6 N -0.334 5.334 7 C -0.062 4.062 8 C 0.096 3.904 9 C -0.567 4.567 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.230 5.230 18 C -0.136 4.136 19 C -0.102 4.102 20 C 0.142 3.858 21 C -0.184 4.184 22 O -0.348 6.348 23 C -0.112 4.112 24 C -0.131 4.131 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.121 4.121 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.031 0.969 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.217 0.783 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.183 8.669 25.073 26.556 hybrid contribution 1.129 1.405 -0.372 1.840 sum 2.311 10.074 24.701 26.776 Atomic orbital electron populations 1.21817 0.92334 1.03636 1.02185 1.21707 0.97204 0.95650 0.90294 0.92898 1.20035 0.78612 0.87562 0.83773 1.90673 1.49516 1.15047 1.84172 1.47845 1.68120 1.07276 1.10190 1.21691 0.99824 0.81521 1.03210 1.19645 0.96816 0.92675 0.81314 1.21325 0.93164 1.36300 1.05863 0.90778 1.24858 0.96629 0.94978 0.96564 1.69894 1.28118 1.38880 1.16704 0.86847 0.84902 0.79685 0.78231 1.19868 1.21099 1.19123 1.61608 1.09430 1.52430 0.99511 1.22805 0.86421 0.99575 1.04801 1.22969 1.01570 0.94894 0.90744 1.19984 0.82373 0.94836 0.88610 1.21636 0.98163 0.95335 1.03237 1.86628 1.17775 1.37881 1.92508 1.20617 0.97776 0.97066 0.95758 1.21135 0.96896 0.96327 0.98760 1.21155 1.00025 1.00142 0.92564 1.21178 0.97264 0.97939 0.97697 1.21171 0.97389 0.97095 0.98367 1.21036 0.99952 0.99553 0.91571 0.90595 0.92263 0.91116 0.93884 0.90563 0.92128 0.95361 0.94497 0.92576 0.88497 0.96890 0.91016 0.94541 0.89189 0.89378 0.92721 0.91657 0.78281 0.85822 0.86051 0.86258 0.86138 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.42 37.15 0.31 -1.63 16 2 C 0.06 0.95 1.64 -68.87 -0.11 0.84 16 3 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 4 C 0.51 10.55 5.67 -10.98 -0.06 10.49 16 5 O -0.52 -12.92 15.13 5.55 0.08 -12.83 16 6 N -0.60 -12.44 2.86 -182.96 -0.52 -12.96 16 7 C 0.08 1.26 10.01 59.84 0.60 1.86 16 8 C 0.22 5.34 4.27 -5.20 -0.02 5.31 16 9 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 10 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 13 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 14 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 17 N -0.51 -7.13 3.55 -236.28 -0.84 -7.97 16 18 C 0.01 0.16 8.78 60.06 0.53 0.69 16 19 C 0.03 0.28 3.40 -3.83 -0.01 0.27 16 20 C 0.18 1.90 1.00 -91.78 -0.09 1.81 16 21 C -0.13 -1.50 8.68 37.15 0.32 -1.18 16 22 O -0.54 -5.68 8.95 -35.23 -0.32 -5.99 16 23 C -0.11 -1.04 4.81 -104.62 -0.50 -1.54 16 24 C -0.11 -0.98 9.14 -39.59 -0.36 -1.34 16 25 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 26 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 27 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 28 C -0.10 -0.91 9.35 -39.58 -0.37 -1.28 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.61 6.42 -51.93 -0.33 0.27 16 31 H 0.07 1.02 7.64 -51.93 -0.40 0.62 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.06 0.78 5.57 -51.93 -0.29 0.49 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.10 1.29 5.48 -51.93 -0.28 1.00 16 39 H 0.01 0.15 7.94 -51.93 -0.41 -0.26 16 40 H 0.07 1.23 6.11 -51.93 -0.32 0.91 16 41 H 0.04 0.36 7.86 -51.93 -0.41 -0.05 16 42 H 0.09 0.89 3.96 -51.93 -0.21 0.68 16 43 H 0.09 1.29 7.63 -51.93 -0.40 0.89 16 44 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.37 2.80 8.87 45.56 0.40 3.21 16 47 H 0.12 0.95 6.18 -52.49 -0.32 0.62 16 48 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 50 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 51 H 0.13 1.09 7.48 -52.49 -0.39 0.70 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -34.90 396.16 -8.31 -43.21 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.39 Total: 3.72 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.41 Total: -3.26 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.59 Total: -47.91 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.23 Total: -18.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.90 -8.31 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823585976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.958 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds