Wall clock time and date at job start Tue Mar 31 2020 18:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47243 * 2 1 4 4 C 1.50706 * 109.47375 * 240.00209 * 2 1 3 5 5 O 1.21286 * 119.99789 * 267.22756 * 4 2 1 6 6 N 1.34777 * 119.99762 * 87.22747 * 4 2 1 7 7 C 1.46495 * 120.00118 * 4.71201 * 6 4 2 8 8 C 1.46498 * 119.99482 * 184.71595 * 6 4 2 9 9 C 1.50698 * 109.47261 * 90.00099 * 8 6 4 10 10 H 1.08002 * 119.99907 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99718 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99765 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00241 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46868 * 90.00151 * 13 11 9 15 15 H 1.48502 * 109.47099 * 209.99612 * 13 11 9 16 16 H 1.48499 * 109.47463 * 330.00155 * 13 11 9 17 17 N 1.46899 * 109.47100 * 120.00397 * 2 1 3 18 18 C 1.46901 * 111.00174 * 179.31363 * 17 2 1 19 19 C 1.46900 * 111.00057 * 303.26474 * 17 2 1 20 20 C 1.52998 * 109.47526 * 160.13518 * 19 17 2 21 21 C 1.52993 * 109.46864 * 299.18870 * 20 19 17 22 22 O 1.42904 * 109.46697 * 59.18711 * 20 19 17 23 23 C 1.50702 * 109.47127 * 179.18708 * 20 19 17 24 24 C 1.38232 * 120.00194 * 29.73040 * 23 20 19 25 25 C 1.38230 * 119.99882 * 179.76429 * 24 23 20 26 26 C 1.38233 * 120.00156 * 0.50809 * 25 24 23 27 27 C 1.38231 * 119.99973 * 359.74270 * 26 25 24 28 28 C 1.38236 * 119.99584 * 210.00360 * 23 20 19 29 29 H 1.09001 * 109.47317 * 188.21302 * 1 2 3 30 30 H 1.08997 * 109.47133 * 308.21138 * 1 2 3 31 31 H 1.08999 * 109.47316 * 68.21568 * 1 2 3 32 32 H 1.09003 * 109.46840 * 91.91640 * 7 6 4 33 33 H 1.08999 * 109.47125 * 211.91900 * 7 6 4 34 34 H 1.09001 * 109.47695 * 331.91880 * 7 6 4 35 35 H 1.09001 * 109.46756 * 209.99731 * 8 6 4 36 36 H 1.08998 * 109.47621 * 329.99638 * 8 6 4 37 37 H 0.96994 * 120.00212 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47447 * 190.72583 * 18 17 2 39 39 H 1.08999 * 109.47424 * 70.71971 * 18 17 2 40 40 H 1.09002 * 109.46981 * 310.72568 * 18 17 2 41 41 H 1.09005 * 109.47121 * 280.13682 * 19 17 2 42 42 H 1.08999 * 109.47238 * 40.12993 * 19 17 2 43 43 H 1.09000 * 109.47307 * 60.00014 * 21 20 19 44 44 H 1.09010 * 109.47024 * 179.97438 * 21 20 19 45 45 H 1.08998 * 109.47497 * 299.99737 * 21 20 19 46 46 H 0.96699 * 113.99860 * 60.00851 * 22 20 19 47 47 H 1.08002 * 119.99704 * 359.97438 * 24 23 20 48 48 H 1.08007 * 119.99908 * 180.22933 * 25 24 23 49 49 H 1.07999 * 120.00006 * 179.72332 * 26 25 24 50 50 H 1.07998 * 120.00068 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.00784 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2824 -1.8964 -1.1864 6 7 2.2038 -0.0277 -2.3799 7 6 2.0012 1.4229 -2.4075 8 6 2.5926 -0.7365 -3.6016 9 6 1.3561 -1.1768 -4.3421 10 1 0.3784 -0.9516 -3.9423 11 6 1.4731 -1.8672 -5.5299 12 7 0.3940 -2.2519 -6.1758 13 14 3.1641 -2.2560 -6.2216 14 1 3.6220 -3.5691 -5.7007 15 1 3.0923 -2.3094 -7.7039 16 1 4.1224 -1.1988 -5.8102 17 7 2.0196 -0.6926 1.1994 18 6 3.4880 -0.7264 1.2252 19 6 1.4859 -0.0731 2.4198 20 6 1.5877 -1.0639 3.5812 21 6 0.7632 -2.3121 3.2605 22 8 2.9548 -1.4326 3.7742 23 6 1.0585 -0.4213 4.8375 24 6 0.0697 0.5413 4.7578 25 6 -0.4191 1.1271 5.9105 26 6 0.0884 0.7580 7.1421 27 6 1.0809 -0.2009 7.2215 28 6 1.5661 -0.7905 6.0691 29 1 -0.3634 -1.0171 0.1468 30 1 -0.3633 0.6357 0.8074 31 1 -0.3634 0.3814 -0.9543 32 1 2.9490 1.9258 -2.2154 33 1 1.6248 1.7186 -3.3868 34 1 1.2790 1.7036 -1.6408 35 1 3.1787 -0.0718 -4.2363 36 1 3.1901 -1.6099 -3.3406 37 1 0.4762 -2.7372 -7.0116 38 1 3.8221 -1.4018 2.0128 39 1 3.8712 0.2754 1.4188 40 1 3.8602 -1.0781 0.2629 41 1 2.0616 0.8223 2.6544 42 1 0.4416 0.1971 2.2633 43 1 1.1459 -2.7768 2.3518 44 1 0.8361 -3.0182 4.0878 45 1 -0.2795 -2.0308 3.1133 46 1 3.5372 -0.6890 3.9816 47 1 -0.3234 0.8332 3.7951 48 1 -1.1943 1.8766 5.8484 49 1 -0.2904 1.2189 8.0424 50 1 1.4777 -0.4890 8.1838 51 1 2.3415 -1.5397 6.1312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823585976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:33 Heat of formation + Delta-G solvation = -57.982303 kcal Electronic energy + Delta-G solvation = -29993.541443 eV Core-core repulsion = 26085.832413 eV Total energy + Delta-G solvation = -3907.709030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40632 -40.64924 -38.76951 -37.05042 -36.49973 -34.71037 -33.56772 -32.31549 -31.71235 -30.36748 -30.25274 -28.17986 -27.37785 -25.81734 -25.17510 -24.02590 -23.35450 -22.27225 -20.96489 -19.78366 -19.14139 -18.57717 -18.14388 -17.51450 -17.04278 -16.58299 -16.49376 -16.38174 -15.79542 -15.57296 -15.41263 -15.18932 -14.94053 -14.63125 -14.32013 -14.22363 -14.08154 -13.85598 -13.66773 -13.61443 -13.41878 -13.31110 -13.20108 -13.19243 -12.92612 -12.80410 -12.68773 -12.53020 -12.35526 -12.24270 -12.19507 -12.02431 -11.92049 -11.74467 -11.59927 -10.84169 -10.80506 -10.44127 -9.78341 -9.65279 -9.37986 -9.12977 -8.34685 -6.39299 0.43896 0.53923 1.31082 1.35724 1.43594 1.80297 2.19853 2.30036 2.87703 2.92727 2.99683 3.33120 3.61670 3.75588 3.84304 4.02293 4.10422 4.13457 4.18494 4.21134 4.29764 4.36630 4.39774 4.53514 4.61739 4.63292 4.69077 4.71533 4.72875 4.77437 4.79224 4.86971 4.91673 4.95929 4.97683 4.99073 5.13513 5.20320 5.21766 5.30560 5.41404 5.45319 5.60500 5.61252 5.66818 5.69327 5.97909 6.13388 6.15825 6.24893 6.61789 6.72745 6.84002 7.21713 7.47138 8.82102 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002503 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.229216 B =11184.400485 C =11448.277903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 H 0.085 0.915 4 C 0.505 3.495 5 O -0.576 6.576 6 N -0.611 5.611 7 C 0.075 3.925 8 C 0.224 3.776 9 C -0.534 4.534 10 H 0.031 0.969 11 C 0.011 3.989 12 N -0.944 5.944 13 Si 0.946 3.054 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.239 1.239 17 N -0.526 5.526 18 C 0.020 3.980 19 C 0.032 3.968 20 C 0.190 3.810 21 C -0.124 4.124 22 O -0.556 6.556 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.114 4.114 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.015 0.985 37 H 0.268 0.732 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.383 0.617 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.137 0.863 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 13.348 27.431 30.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 H 0.103 0.897 4 C 0.293 3.707 5 O -0.455 6.455 6 N -0.343 5.343 7 C -0.067 4.067 8 C 0.102 3.898 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.187 4.187 12 N -0.584 5.584 13 Si 0.769 3.231 14 H -0.204 1.204 15 H -0.198 1.198 16 H -0.162 1.162 17 N -0.251 5.251 18 C -0.128 4.128 19 C -0.096 4.096 20 C 0.149 3.851 21 C -0.182 4.182 22 O -0.363 6.363 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.132 4.132 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.232 0.768 47 H 0.152 0.848 48 H 0.159 0.841 49 H 0.158 0.842 50 H 0.154 0.846 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.015 11.594 27.122 29.565 hybrid contribution 0.775 0.509 -0.901 1.293 sum 2.790 12.103 26.221 29.014 Atomic orbital electron populations 1.21829 0.91283 1.03129 1.03385 1.21621 0.97727 0.96194 0.88067 0.89735 1.21103 0.77234 0.87218 0.85153 1.90635 1.51818 1.17767 1.85294 1.47969 1.67836 1.09446 1.09026 1.21998 1.02435 0.78315 1.03966 1.19296 0.94704 0.92848 0.82963 1.21542 0.93025 1.36374 1.06282 0.95103 1.25830 1.01152 0.94699 0.97002 1.70041 1.30823 1.40056 1.17473 0.85738 0.79815 0.79730 0.77799 1.20442 1.19845 1.16238 1.61520 1.09587 1.53680 1.00346 1.22683 0.86547 1.00917 1.02649 1.23021 1.02249 0.95309 0.89006 1.19820 0.82158 0.93876 0.89294 1.21577 0.98876 0.96254 1.01458 1.86595 1.18153 1.39018 1.92576 1.20470 0.98591 0.97809 0.95108 1.21309 0.96703 0.96229 0.99692 1.21448 1.00268 1.00317 0.92356 1.21501 0.96793 0.97540 0.98583 1.21418 0.97459 0.97022 0.98745 1.21110 1.00263 0.99868 0.91975 0.93034 0.87817 0.92081 0.90658 0.91376 0.89183 0.93349 0.96672 0.92275 0.88267 0.94306 0.94851 0.92556 0.88077 0.92736 0.92898 0.90921 0.76793 0.84802 0.84127 0.84212 0.84558 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.42 71.98 0.61 -2.98 16 2 C 0.08 2.16 1.64 44.17 0.07 2.23 16 3 H 0.09 1.90 6.54 -2.39 -0.02 1.88 16 4 C 0.50 20.93 5.67 87.66 0.50 21.42 16 5 O -0.58 -30.04 15.13 -3.05 -0.05 -30.09 16 6 N -0.61 -25.14 2.86 -851.14 -2.43 -27.57 16 7 C 0.07 2.14 10.01 127.77 1.28 3.42 16 8 C 0.22 11.17 4.27 85.63 0.37 11.54 16 9 C -0.53 -31.76 9.94 25.60 0.25 -31.51 16 10 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 11 C 0.01 0.67 5.47 84.66 0.46 1.14 16 12 N -0.94 -60.20 13.96 21.45 0.30 -59.90 16 13 Si 0.95 45.30 27.47 68.60 1.88 47.18 16 14 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 17 N -0.53 -14.28 3.55 -901.47 -3.20 -17.48 16 18 C 0.02 0.53 8.78 127.69 1.12 1.65 16 19 C 0.03 0.59 3.40 86.30 0.29 0.89 16 20 C 0.19 3.68 1.00 -11.54 -0.01 3.67 16 21 C -0.12 -2.97 8.68 71.98 0.62 -2.35 16 22 O -0.56 -11.13 8.95 -148.98 -1.33 -12.46 16 23 C -0.12 -1.99 4.81 -19.87 -0.10 -2.08 16 24 C -0.12 -1.75 9.14 22.27 0.20 -1.55 16 25 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16 26 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 27 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 28 C -0.11 -1.84 9.35 22.27 0.21 -1.63 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.74 6.42 -2.39 -0.02 1.73 16 31 H 0.06 1.69 7.64 -2.39 -0.02 1.68 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.09 2.02 5.57 -2.39 -0.01 2.00 16 35 H 0.05 2.21 7.13 -2.39 -0.02 2.19 16 36 H 0.02 0.82 6.79 -2.39 -0.02 0.81 16 37 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.10 2.60 5.48 -2.39 -0.01 2.59 16 39 H 0.04 0.82 7.94 -2.39 -0.02 0.80 16 40 H 0.03 1.15 6.11 -2.39 -0.01 1.14 16 41 H 0.06 0.88 7.86 -2.38 -0.02 0.86 16 42 H 0.10 1.65 3.96 -2.39 -0.01 1.64 16 43 H 0.05 1.67 7.63 -2.39 -0.02 1.65 16 44 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.38 5.17 8.87 -74.06 -0.66 4.52 16 47 H 0.13 1.57 6.18 -2.91 -0.02 1.56 16 48 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 49 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 50 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 51 H 0.13 2.02 7.48 -2.91 -0.02 2.00 16 Total: -1.00 -81.12 396.16 1.94 -79.18 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.22 Total: 21.46 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.55 Total: -0.31 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -5.33 Total: -104.95 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.38 Total: -42.55 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -81.12 1.94 -79.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823585976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.197 kcal (2) G-P(sol) polarization free energy of solvation -81.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds