Wall clock time and date at job start Tue Mar 31 2020 18:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46997 * 2 1 4 4 C 1.46498 * 119.99832 * 269.99703 * 3 2 1 5 5 C 1.50698 * 109.47175 * 269.99755 * 4 3 2 6 6 H 1.08009 * 120.00037 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00066 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99888 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47506 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47556 * 120.00119 * 9 7 5 12 12 H 1.48502 * 109.46863 * 240.00009 * 9 7 5 13 13 C 1.34781 * 120.00054 * 89.99949 * 3 2 1 14 14 O 1.21275 * 120.00153 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99928 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47031 * 179.97438 * 15 13 3 17 17 C 1.46900 * 111.00327 * 293.96069 * 16 15 13 18 18 C 1.46903 * 110.99945 * 170.00273 * 16 15 13 19 19 C 1.53001 * 109.46995 * 208.35357 * 18 16 15 20 20 C 1.53002 * 109.46895 * 180.08348 * 19 18 16 21 21 O 1.42905 * 109.47000 * 300.07912 * 19 18 16 22 22 C 1.50693 * 109.47519 * 60.08095 * 19 18 16 23 23 C 1.38234 * 120.00463 * 210.00396 * 22 19 18 24 24 C 1.38230 * 120.00611 * 180.02562 * 23 22 19 25 25 C 1.38234 * 119.99733 * 359.95447 * 24 23 22 26 26 C 1.38236 * 119.99863 * 0.27489 * 25 24 23 27 27 C 1.38232 * 120.00046 * 359.53308 * 26 25 24 28 28 H 1.08997 * 109.47511 * 300.00185 * 1 2 3 29 29 H 1.08999 * 109.46692 * 60.00222 * 1 2 3 30 30 H 1.08994 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47511 * 239.99815 * 2 1 3 32 32 H 1.08999 * 109.46692 * 119.99778 * 2 1 3 33 33 H 1.08994 * 109.47010 * 30.00195 * 4 3 2 34 34 H 1.09007 * 109.47018 * 150.00394 * 4 3 2 35 35 H 0.96994 * 120.00121 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46835 * 60.00126 * 15 13 3 37 37 H 1.08994 * 109.47615 * 300.00340 * 15 13 3 38 38 H 1.09000 * 109.46924 * 296.07475 * 17 16 15 39 39 H 1.08993 * 109.47173 * 56.07482 * 17 16 15 40 40 H 1.09003 * 109.47135 * 176.08311 * 17 16 15 41 41 H 1.08998 * 109.47106 * 88.34806 * 18 16 15 42 42 H 1.09004 * 109.46751 * 328.34955 * 18 16 15 43 43 H 1.09001 * 109.46907 * 304.79813 * 20 19 18 44 44 H 1.09001 * 109.47353 * 64.80499 * 20 19 18 45 45 H 1.08996 * 109.46965 * 184.80556 * 20 19 18 46 46 H 0.96700 * 113.99975 * 71.89887 * 21 19 18 47 47 H 1.08007 * 119.99313 * 359.97438 * 23 22 19 48 48 H 1.07999 * 120.00235 * 179.97438 * 24 23 22 49 49 H 1.08001 * 119.99883 * 180.02562 * 25 24 23 50 50 H 1.08007 * 119.99611 * 179.73001 * 26 25 24 51 51 H 1.08001 * 120.00084 * 180.20646 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1495 2.3905 -2.8774 8 7 3.3498 3.1273 -3.6171 9 14 5.9135 2.0964 -3.4168 10 1 6.6009 1.2405 -2.4168 11 1 5.9207 1.4183 -4.7379 12 1 6.6216 3.3973 -3.5244 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9912 1.3064 2.4724 16 7 2.3101 2.2062 3.5889 17 6 3.7470 2.5090 3.6272 18 6 1.8570 1.6405 4.8667 19 6 1.5395 2.7752 5.8427 20 6 1.0696 2.1861 7.1742 21 8 2.7134 3.5613 6.0575 22 6 0.4517 3.6442 5.2661 23 6 0.4028 4.9897 5.5793 24 6 -0.5953 5.7867 5.0509 25 6 -1.5441 5.2384 4.2083 26 6 -1.4981 3.8919 3.8988 27 6 -0.4976 3.0957 4.4241 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1411 -1.1384 35 1 3.6759 3.5177 -4.4429 36 1 2.6212 0.4187 2.5303 37 1 0.9432 1.0125 2.5299 38 1 4.3062 1.5938 3.8216 39 1 4.0559 2.9269 2.6691 40 1 3.9452 3.2310 4.4195 41 1 2.6428 1.0111 5.2844 42 1 0.9612 1.0418 4.7017 43 1 0.2259 1.5187 6.9987 44 1 1.8857 1.6274 7.6326 45 1 0.7624 2.9925 7.8401 46 1 2.9635 4.1096 5.3012 47 1 1.1442 5.4180 6.2377 48 1 -0.6336 6.8378 5.2959 49 1 -2.3238 5.8611 3.7950 50 1 -2.2421 3.4626 3.2440 51 1 -0.4597 2.0444 4.1797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823593124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:06 Heat of formation + Delta-G solvation = -42.385287 kcal Electronic energy + Delta-G solvation = -30449.900839 eV Core-core repulsion = 26542.868146 eV Total energy + Delta-G solvation = -3907.032693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22817 -39.11226 -37.60723 -35.78662 -35.01124 -32.81213 -32.63771 -30.77910 -30.10008 -29.62289 -28.71634 -27.08468 -26.51371 -23.58355 -23.05905 -22.90796 -22.34645 -21.57887 -20.16171 -18.28916 -17.93866 -16.73690 -16.38707 -16.31950 -15.74415 -15.26251 -15.18682 -15.01492 -14.58264 -14.33623 -14.08547 -14.01411 -13.58217 -13.36419 -13.33186 -13.11822 -12.79723 -12.69681 -12.55230 -12.42519 -12.22023 -12.02451 -11.85279 -11.79015 -11.65205 -11.45910 -11.27690 -11.13365 -10.94637 -10.87958 -10.69295 -10.61770 -10.51983 -10.12633 -10.08759 -9.60033 -8.83574 -8.80404 -8.63248 -8.43283 -8.11759 -7.61503 -6.03739 -4.08379 1.43094 1.50527 3.29197 3.36706 3.39689 3.48944 3.63235 3.86280 4.09526 4.22251 4.45554 4.56702 4.75870 4.97401 5.05521 5.07315 5.11096 5.19811 5.23722 5.29424 5.31035 5.39779 5.44904 5.50830 5.53250 5.54899 5.63706 5.64203 5.74927 5.75622 5.82463 5.85384 5.99395 6.01812 6.04803 6.10116 6.22293 6.40386 6.46948 6.53216 6.59217 6.63265 6.93647 7.06892 7.11434 7.17973 7.47993 7.58813 7.61143 7.93377 8.25028 8.47425 8.92367 9.17259 9.57003 11.04243 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.003242 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.952129 B = 8634.634534 C = 8890.969493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.037 3.963 16 N -0.517 5.517 17 C 0.011 3.989 18 C 0.028 3.972 19 C 0.182 3.818 20 C -0.135 4.135 21 O -0.559 6.559 22 C -0.092 4.092 23 C -0.111 4.111 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.091 4.091 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.018 0.982 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.385 0.615 47 H 0.122 0.878 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 -4.266 19.421 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.398 6.398 15 C -0.094 4.094 16 N -0.241 5.241 17 C -0.136 4.136 18 C -0.100 4.100 19 C 0.141 3.859 20 C -0.193 4.193 21 O -0.369 6.369 22 C -0.092 4.092 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.109 4.109 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.037 0.963 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.237 0.763 47 H 0.140 0.860 48 H 0.136 0.864 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.375 -3.386 19.716 22.092 hybrid contribution 1.347 -0.745 -1.074 1.877 sum -8.029 -4.131 18.642 20.713 Atomic orbital electron populations 1.22220 0.96857 1.01286 1.02336 1.21390 0.93469 0.84442 1.02466 1.48253 1.64222 1.13098 1.07717 1.19229 0.96103 0.93638 0.78113 1.21470 0.96968 1.31698 1.06195 0.92564 1.24929 0.97761 0.94958 0.96438 1.69940 1.35567 1.33486 1.14341 0.86469 0.84762 0.78043 0.78290 1.19877 1.20992 1.20881 1.20073 0.78879 0.87068 0.84636 1.90634 1.44732 1.17681 1.86726 1.22129 1.01822 0.94286 0.91143 1.61604 1.17740 1.43642 1.01073 1.22848 0.86081 0.99852 1.04857 1.22882 1.00622 0.96033 0.90475 1.19976 0.83238 0.89016 0.93681 1.21744 1.01226 1.01106 0.95186 1.86478 1.44258 1.61157 1.44997 1.20210 0.96698 0.94529 0.97789 1.20915 0.98506 0.93325 1.00113 1.21063 0.95383 0.99481 0.98079 1.21109 0.99128 0.95310 0.98387 1.21097 0.98721 0.94164 0.99805 1.20881 0.94182 0.99702 0.96176 0.93142 0.91994 0.92272 0.90025 0.92076 0.95190 0.93928 0.92805 0.92734 0.88963 0.96301 0.88755 0.90841 0.93203 0.90352 0.91174 0.91584 0.91607 0.76290 0.85997 0.86443 0.86502 0.86406 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.44 2.46 -175.06 -0.43 -12.87 16 4 C 0.25 6.46 5.16 -5.20 -0.03 6.43 16 5 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.33 7.37 -10.98 -0.08 10.25 16 14 O -0.52 -12.87 13.91 5.56 0.08 -12.80 16 15 C 0.04 0.55 3.94 -4.98 -0.02 0.53 16 16 N -0.52 -7.29 3.62 -244.37 -0.89 -8.17 16 17 C 0.01 0.16 8.76 60.06 0.53 0.69 16 18 C 0.03 0.31 3.78 -3.82 -0.01 0.30 16 19 C 0.18 1.99 1.04 -91.77 -0.10 1.90 16 20 C -0.13 -1.20 8.83 37.16 0.33 -0.88 16 21 O -0.56 -6.71 10.97 -35.23 -0.39 -7.09 16 22 C -0.09 -1.10 4.38 -104.63 -0.46 -1.56 16 23 C -0.11 -1.32 9.20 -39.59 -0.36 -1.69 16 24 C -0.12 -1.42 10.05 -39.59 -0.40 -1.81 16 25 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.09 -1.10 8.88 -39.58 -0.35 -1.45 16 28 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 1.26 7.42 -51.92 -0.39 0.88 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.05 0.74 7.38 -51.93 -0.38 0.36 16 37 H 0.09 1.16 6.83 -51.93 -0.35 0.81 16 38 H 0.02 0.26 8.06 -51.93 -0.42 -0.16 16 39 H 0.09 1.76 5.82 -51.93 -0.30 1.45 16 40 H 0.07 0.97 4.79 -51.93 -0.25 0.72 16 41 H 0.05 0.54 7.81 -51.93 -0.41 0.14 16 42 H 0.08 0.75 5.95 -51.93 -0.31 0.44 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.38 4.64 6.32 45.56 0.29 4.93 16 47 H 0.12 1.34 7.49 -52.48 -0.39 0.95 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 50 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 51 H 0.12 1.25 6.16 -52.49 -0.32 0.92 16 LS Contribution 402.42 15.07 6.06 6.06 Total: -1.00 -33.24 402.42 -9.37 -42.61 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.71 Total: 5.86 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.81 Total: -4.59 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.58 Total: -46.92 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.31 Total: -19.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.24 -9.37 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823593124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.222 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds