Wall clock time and date at job start Tue Mar 31 2020 18:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46997 * 2 1 4 4 C 1.46498 * 119.99832 * 269.99703 * 3 2 1 5 5 C 1.50698 * 109.47175 * 269.99755 * 4 3 2 6 6 H 1.08009 * 120.00037 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00066 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99888 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47506 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47556 * 120.00119 * 9 7 5 12 12 H 1.48502 * 109.46863 * 240.00009 * 9 7 5 13 13 C 1.34781 * 120.00054 * 89.99949 * 3 2 1 14 14 O 1.21275 * 120.00153 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99928 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47031 * 179.97438 * 15 13 3 17 17 C 1.46900 * 111.00327 * 293.96069 * 16 15 13 18 18 C 1.46903 * 110.99945 * 170.00273 * 16 15 13 19 19 C 1.53001 * 109.46995 * 208.35357 * 18 16 15 20 20 C 1.53002 * 109.46895 * 180.08348 * 19 18 16 21 21 O 1.42905 * 109.47000 * 300.07912 * 19 18 16 22 22 C 1.50693 * 109.47519 * 60.08095 * 19 18 16 23 23 C 1.38234 * 120.00463 * 210.00396 * 22 19 18 24 24 C 1.38230 * 120.00611 * 180.02562 * 23 22 19 25 25 C 1.38234 * 119.99733 * 359.95447 * 24 23 22 26 26 C 1.38236 * 119.99863 * 0.27489 * 25 24 23 27 27 C 1.38232 * 120.00046 * 359.53308 * 26 25 24 28 28 H 1.08997 * 109.47511 * 300.00185 * 1 2 3 29 29 H 1.08999 * 109.46692 * 60.00222 * 1 2 3 30 30 H 1.08994 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47511 * 239.99815 * 2 1 3 32 32 H 1.08999 * 109.46692 * 119.99778 * 2 1 3 33 33 H 1.08994 * 109.47010 * 30.00195 * 4 3 2 34 34 H 1.09007 * 109.47018 * 150.00394 * 4 3 2 35 35 H 0.96994 * 120.00121 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46835 * 60.00126 * 15 13 3 37 37 H 1.08994 * 109.47615 * 300.00340 * 15 13 3 38 38 H 1.09000 * 109.46924 * 296.07475 * 17 16 15 39 39 H 1.08993 * 109.47173 * 56.07482 * 17 16 15 40 40 H 1.09003 * 109.47135 * 176.08311 * 17 16 15 41 41 H 1.08998 * 109.47106 * 88.34806 * 18 16 15 42 42 H 1.09004 * 109.46751 * 328.34955 * 18 16 15 43 43 H 1.09001 * 109.46907 * 304.79813 * 20 19 18 44 44 H 1.09001 * 109.47353 * 64.80499 * 20 19 18 45 45 H 1.08996 * 109.46965 * 184.80556 * 20 19 18 46 46 H 0.96700 * 113.99975 * 71.89887 * 21 19 18 47 47 H 1.08007 * 119.99313 * 359.97438 * 23 22 19 48 48 H 1.07999 * 120.00235 * 179.97438 * 24 23 22 49 49 H 1.08001 * 119.99883 * 180.02562 * 25 24 23 50 50 H 1.08007 * 119.99611 * 179.73001 * 26 25 24 51 51 H 1.08001 * 120.00084 * 180.20646 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1495 2.3905 -2.8774 8 7 3.3498 3.1273 -3.6171 9 14 5.9135 2.0964 -3.4168 10 1 6.6009 1.2405 -2.4168 11 1 5.9207 1.4183 -4.7379 12 1 6.6216 3.3973 -3.5244 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9912 1.3064 2.4724 16 7 2.3101 2.2062 3.5889 17 6 3.7470 2.5090 3.6272 18 6 1.8570 1.6405 4.8667 19 6 1.5395 2.7752 5.8427 20 6 1.0696 2.1861 7.1742 21 8 2.7134 3.5613 6.0575 22 6 0.4517 3.6442 5.2661 23 6 0.4028 4.9897 5.5793 24 6 -0.5953 5.7867 5.0509 25 6 -1.5441 5.2384 4.2083 26 6 -1.4981 3.8919 3.8988 27 6 -0.4976 3.0957 4.4241 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1411 -1.1384 35 1 3.6759 3.5177 -4.4429 36 1 2.6212 0.4187 2.5303 37 1 0.9432 1.0125 2.5299 38 1 4.3062 1.5938 3.8216 39 1 4.0559 2.9269 2.6691 40 1 3.9452 3.2310 4.4195 41 1 2.6428 1.0111 5.2844 42 1 0.9612 1.0418 4.7017 43 1 0.2259 1.5187 6.9987 44 1 1.8857 1.6274 7.6326 45 1 0.7624 2.9925 7.8401 46 1 2.9635 4.1096 5.3012 47 1 1.1442 5.4180 6.2377 48 1 -0.6336 6.8378 5.2959 49 1 -2.3238 5.8611 3.7950 50 1 -2.2421 3.4626 3.2440 51 1 -0.4597 2.0444 4.1797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823593124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:05 Heat of formation + Delta-G solvation = -64.054479 kcal Electronic energy + Delta-G solvation = -30450.840485 eV Core-core repulsion = 26542.868146 eV Total energy + Delta-G solvation = -3907.972339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23930 -40.50898 -38.58961 -37.08804 -36.41550 -34.89213 -33.53388 -31.65953 -31.61721 -30.49751 -30.11272 -28.29900 -27.98461 -25.15260 -24.31289 -23.97552 -23.39738 -22.79020 -21.02686 -19.81867 -18.82075 -18.61791 -18.00435 -17.46062 -17.02144 -16.62982 -16.37169 -16.17249 -15.90735 -15.51663 -15.42888 -15.02431 -14.66136 -14.64842 -14.45838 -14.31726 -14.13220 -13.79726 -13.63696 -13.54215 -13.31456 -13.23082 -13.10749 -12.98859 -12.81370 -12.72018 -12.64646 -12.61581 -12.45425 -12.28303 -12.13788 -11.88911 -11.80110 -11.66251 -11.47392 -11.06119 -10.65141 -10.36687 -9.71009 -9.52049 -9.37029 -9.20163 -8.22028 -6.36955 0.54479 0.61248 1.34744 1.37313 1.48723 1.93273 2.24700 2.40898 2.96859 3.00836 3.07259 3.26254 3.73159 3.75190 3.88017 4.08985 4.13903 4.20516 4.23946 4.32763 4.33327 4.38738 4.44508 4.47953 4.54930 4.66211 4.70527 4.72130 4.73874 4.81172 4.94620 4.95742 5.00112 5.02169 5.07418 5.18062 5.20393 5.23803 5.25005 5.30008 5.40935 5.59841 5.64855 5.70889 5.73243 5.86601 5.94161 6.08239 6.11530 6.21381 6.69325 6.72239 6.88758 7.30081 7.60259 8.84851 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.003242 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.952129 B = 8634.634534 C = 8890.969493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.052 3.948 16 N -0.530 5.530 17 C 0.019 3.981 18 C 0.032 3.968 19 C 0.180 3.820 20 C -0.132 4.132 21 O -0.566 6.566 22 C -0.098 4.098 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.135 4.135 27 C -0.102 4.102 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.018 0.982 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.029 0.971 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.382 0.618 47 H 0.125 0.875 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.131 0.869 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 -6.802 21.101 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.145 3.855 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.079 4.079 16 N -0.254 5.254 17 C -0.129 4.129 18 C -0.096 4.096 19 C 0.139 3.861 20 C -0.189 4.189 21 O -0.376 6.376 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.153 4.153 27 C -0.120 4.120 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.036 0.964 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.233 0.767 47 H 0.143 0.857 48 H 0.150 0.850 49 H 0.149 0.851 50 H 0.149 0.851 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.605 -5.975 21.424 24.227 hybrid contribution 1.362 0.088 -1.579 2.087 sum -8.243 -5.887 19.846 22.281 Atomic orbital electron populations 1.22148 0.94524 1.03445 1.01687 1.21724 0.95363 0.81496 1.03685 1.48276 1.64446 1.14991 1.06171 1.18612 0.95046 0.91342 0.80536 1.21734 0.97913 1.31704 1.06403 0.92998 1.25846 1.02267 0.94526 0.96503 1.70060 1.37683 1.34304 1.14837 0.85391 0.79168 0.77962 0.78416 1.19117 1.19412 1.20874 1.21153 0.77388 0.86695 0.86190 1.90614 1.46966 1.20353 1.87661 1.22052 1.04030 0.93908 0.87883 1.61516 1.17121 1.44435 1.02302 1.22685 0.87006 1.00441 1.02784 1.22956 1.01801 0.96212 0.88624 1.20149 0.82486 0.88711 0.94732 1.21755 1.02054 1.01246 0.93855 1.86480 1.44854 1.61332 1.44934 1.20400 0.97021 0.94680 0.97772 1.21098 0.98856 0.93812 1.00569 1.21336 0.95337 1.00397 0.98039 1.21396 0.99686 0.95765 0.98580 1.21394 0.99269 0.94473 1.00119 1.21110 0.94158 1.00549 0.96182 0.91934 0.94535 0.88610 0.91281 0.88355 0.96386 0.98900 0.92484 0.90532 0.85854 0.95229 0.93139 0.89622 0.92219 0.87960 0.89328 0.90972 0.92022 0.76677 0.85660 0.84997 0.85114 0.85145 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.24 71.98 0.74 -3.01 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.61 -25.37 2.46 -826.16 -2.03 -27.40 16 4 C 0.27 14.51 5.16 85.63 0.44 14.95 16 5 C -0.54 -31.32 9.39 25.60 0.24 -31.07 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 9 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.50 20.31 7.37 87.66 0.65 20.95 16 14 O -0.58 -29.72 13.91 -3.01 -0.04 -29.76 16 15 C 0.05 1.39 3.94 85.56 0.34 1.73 16 16 N -0.53 -13.93 3.62 -927.04 -3.36 -17.29 16 17 C 0.02 0.54 8.76 127.69 1.12 1.66 16 18 C 0.03 0.59 3.78 86.30 0.33 0.92 16 19 C 0.18 3.54 1.04 -11.54 -0.01 3.52 16 20 C -0.13 -1.97 8.83 71.98 0.64 -1.34 16 21 O -0.57 -12.87 10.97 -148.98 -1.63 -14.50 16 22 C -0.10 -2.21 4.38 -19.87 -0.09 -2.30 16 23 C -0.13 -2.94 9.20 22.27 0.20 -2.74 16 24 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 25 C -0.14 -3.12 10.05 22.27 0.22 -2.90 16 26 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 27 C -0.10 -2.26 8.88 22.27 0.20 -2.06 16 28 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 32 H 0.10 2.17 6.44 -2.39 -0.02 2.16 16 33 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 34 H -0.01 -0.45 7.42 -2.38 -0.02 -0.47 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.08 1.77 7.38 -2.38 -0.02 1.75 16 37 H 0.12 2.56 6.83 -2.39 -0.02 2.54 16 38 H 0.03 0.77 8.06 -2.39 -0.02 0.75 16 39 H 0.05 1.94 5.82 -2.39 -0.01 1.93 16 40 H 0.09 2.23 4.79 -2.39 -0.01 2.21 16 41 H 0.06 1.05 7.81 -2.39 -0.02 1.03 16 42 H 0.10 1.44 5.95 -2.38 -0.01 1.43 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.38 9.08 6.32 -74.06 -0.47 8.61 16 47 H 0.13 2.74 7.49 -2.91 -0.02 2.71 16 48 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 49 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 50 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 51 H 0.13 2.37 6.16 -2.91 -0.02 2.35 16 Total: -1.00 -76.62 402.42 2.13 -74.49 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.45 Total: 26.71 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 6.43 Total: -3.02 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -5.10 Total: -101.30 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -1.68 Total: -44.27 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.62 2.13 -74.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823593124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.436 kcal (2) G-P(sol) polarization free energy of solvation -76.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds