Wall clock time and date at job start Tue Mar 31 2020 18:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 O 1.45194 * 109.47359 * 120.00048 * 2 1 3 5 5 C 1.34224 * 117.00084 * 149.99830 * 4 2 1 6 6 O 1.20827 * 119.99935 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00084 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.46979 * 60.00542 * 7 5 4 9 9 C 1.53000 * 109.47417 * 300.00053 * 7 5 4 10 10 N 1.46906 * 109.47459 * 180.02562 * 7 5 4 11 11 C 1.46890 * 111.00268 * 205.00338 * 10 7 5 12 12 C 1.50701 * 109.47112 * 180.02562 * 11 10 7 13 13 C 1.38285 * 119.92266 * 269.72530 * 12 11 10 14 14 C 1.38107 * 120.07358 * 179.72663 * 13 12 11 15 15 C 1.38913 * 119.92323 * 0.54389 * 14 13 12 16 16 N 1.39673 * 120.07435 * 179.75222 * 15 14 13 17 17 C 1.46503 * 120.00352 * 179.97438 * 16 15 14 18 18 C 1.46500 * 120.00002 * 359.97438 * 16 15 14 19 19 C 1.50696 * 109.47250 * 90.00461 * 18 16 15 20 20 H 1.08004 * 119.99814 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00457 * 180.02562 * 19 18 16 22 22 N 1.31511 * 120.00459 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99713 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47241 * 90.00144 * 23 21 19 25 25 H 1.48498 * 109.47039 * 210.00309 * 23 21 19 26 26 H 1.48510 * 109.47262 * 330.00160 * 23 21 19 27 27 C 1.38908 * 119.85293 * 359.72968 * 15 14 13 28 28 C 1.38111 * 119.92482 * 359.97438 * 27 15 14 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 35 35 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47445 * 300.00204 * 9 7 5 37 37 H 1.09008 * 109.46798 * 60.00014 * 9 7 5 38 38 H 1.08996 * 109.47233 * 179.97438 * 9 7 5 39 39 H 1.00901 * 110.99397 * 328.95911 * 10 7 5 40 40 H 1.09001 * 109.46967 * 299.99523 * 11 10 7 41 41 H 1.08993 * 109.47541 * 59.99970 * 11 10 7 42 42 H 1.07993 * 119.96551 * 359.97431 * 13 12 11 43 43 H 1.08003 * 120.03899 * 180.27211 * 14 13 12 44 44 H 1.09003 * 109.47407 * 89.99109 * 17 16 15 45 45 H 1.08995 * 109.47537 * 209.99692 * 17 16 15 46 46 H 1.09010 * 109.46932 * 330.00010 * 17 16 15 47 47 H 1.09010 * 109.47143 * 210.00279 * 18 16 15 48 48 H 1.08997 * 109.47321 * 329.99883 * 18 16 15 49 49 H 0.96996 * 120.00387 * 180.02562 * 22 21 19 50 50 H 1.07998 * 120.04357 * 179.97438 * 27 15 14 51 51 H 1.07992 * 119.96279 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 3.1937 -1.3170 1.0850 6 8 3.8019 -1.2989 0.0411 7 6 3.7595 -2.0496 2.2741 8 1 3.0664 -2.8325 2.5820 9 6 3.9643 -1.0668 3.4287 10 7 5.0489 -2.6521 1.9101 11 6 5.3472 -3.8117 2.7610 12 6 6.6746 -4.4014 2.3592 13 6 6.7260 -5.3927 1.3965 14 6 7.9412 -5.9314 1.0219 15 6 9.1118 -5.4841 1.6216 16 7 10.3421 -6.0303 1.2488 17 6 11.5756 -5.5571 1.8818 18 6 10.3990 -7.0765 0.2249 19 6 10.5544 -6.4422 -1.1333 20 1 10.6052 -5.3673 -1.2246 21 6 10.6306 -7.2341 -2.2594 22 7 10.7657 -6.6805 -3.4447 23 14 10.5419 -9.0933 -2.1015 24 1 9.1258 -9.5309 -2.1927 25 1 11.3255 -9.7209 -3.1958 26 1 11.1042 -9.5062 -0.7904 27 6 9.0561 -4.4921 2.5923 28 6 7.8380 -3.9535 2.9578 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 4.6575 -0.2839 3.1208 37 1 3.0077 -0.6194 3.6990 38 1 4.3731 -1.5968 4.2889 39 1 5.0665 -2.9059 0.9337 40 1 5.3910 -3.4958 3.8033 41 1 4.5651 -4.5612 2.6410 42 1 5.8152 -5.7434 0.9342 43 1 7.9811 -6.7025 0.2668 44 1 11.7833 -6.1579 2.7673 45 1 12.4032 -5.6485 1.1784 46 1 11.4581 -4.5126 2.1709 47 1 11.2492 -7.7301 0.4200 48 1 9.4788 -7.6602 0.2502 49 1 10.8190 -7.2376 -4.2369 50 1 9.9641 -4.1424 3.0608 51 1 7.7939 -3.1825 3.7128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825117920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:25 Heat of formation + Delta-G solvation = -73.654654 kcal Electronic energy + Delta-G solvation = -28282.557799 eV Core-core repulsion = 24374.169164 eV Total energy + Delta-G solvation = -3908.388634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78444 -40.48121 -38.54207 -37.68235 -36.55747 -34.75369 -34.20474 -32.56045 -31.97193 -30.42943 -29.73244 -28.22552 -27.27740 -26.08582 -25.06950 -23.57631 -22.91137 -22.37499 -21.28118 -21.04277 -19.09996 -19.00896 -18.24645 -17.81863 -17.30276 -16.88355 -16.33190 -16.16066 -15.89763 -15.65833 -15.34173 -15.05895 -14.93471 -14.74852 -14.64692 -14.35200 -14.33738 -14.13280 -13.51367 -13.46840 -13.36576 -13.26405 -13.18711 -13.11962 -13.03578 -12.87616 -12.74923 -12.66519 -12.43227 -12.42161 -12.06887 -11.96863 -11.90780 -11.76455 -11.59882 -11.45776 -11.34562 -10.84200 -10.44048 -9.67844 -9.48388 -8.34905 -7.92576 -6.40527 0.69831 0.79479 1.09013 1.32432 1.33686 1.44448 1.55422 2.28999 2.53479 2.95745 2.98933 3.36816 3.58958 3.78471 3.91450 4.01289 4.03274 4.07077 4.12095 4.20331 4.25276 4.38714 4.48203 4.61019 4.64209 4.67004 4.69611 4.73466 4.77529 4.78847 4.81558 4.82578 4.89493 4.90556 4.94843 5.04889 5.08137 5.10616 5.19638 5.29484 5.32099 5.44196 5.45888 5.59109 5.63011 5.88575 5.95175 6.08509 6.21391 6.22919 6.58637 6.67667 6.68746 6.86325 7.24981 8.82805 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002273 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.590384 B =12313.288368 C =13554.649239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 C -0.166 4.166 4 O -0.349 6.349 5 C 0.459 3.541 6 O -0.535 6.535 7 C 0.094 3.906 8 H 0.105 0.895 9 C -0.129 4.129 10 N -0.685 5.685 11 C 0.120 3.880 12 C -0.161 4.161 13 C -0.070 4.070 14 C -0.218 4.218 15 C 0.211 3.789 16 N -0.628 5.628 17 C 0.097 3.903 18 C 0.232 3.768 19 C -0.536 4.536 20 H 0.022 0.978 21 C 0.009 3.991 22 N -0.947 5.947 23 Si 0.948 3.052 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.242 1.242 27 C -0.218 4.218 28 C -0.047 4.047 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.344 0.656 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.029 0.971 49 H 0.268 0.732 50 H 0.133 0.867 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.250 10.967 17.529 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.265 6.265 5 C 0.303 3.697 6 O -0.424 6.424 7 C -0.016 4.016 8 H 0.122 0.878 9 C -0.187 4.187 10 N -0.320 5.320 11 C -0.007 4.007 12 C -0.164 4.164 13 C -0.089 4.089 14 C -0.241 4.241 15 C 0.107 3.893 16 N -0.336 5.336 17 C -0.046 4.046 18 C 0.109 3.891 19 C -0.575 4.575 20 H 0.040 0.960 21 C -0.188 4.188 22 N -0.587 5.587 23 Si 0.771 3.229 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.165 1.165 27 C -0.240 4.240 28 C -0.066 4.066 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.164 0.836 40 H 0.120 0.880 41 H 0.066 0.934 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.077 0.923 50 H 0.151 0.849 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.521 11.322 17.344 28.462 hybrid contribution 0.028 -1.315 -1.841 2.262 sum -19.493 10.007 15.504 26.842 Atomic orbital electron populations 1.21895 0.89891 1.03583 1.04568 1.23014 0.96781 0.92934 0.85861 1.22196 1.00800 0.94780 1.04577 1.86540 1.35629 1.62435 1.41875 1.24268 0.79100 0.76364 0.89999 1.90688 1.59923 1.59581 1.32227 1.21367 0.91196 0.97788 0.91242 0.87806 1.21743 1.03129 0.98003 0.95815 1.60680 1.29292 1.32662 1.09392 1.20793 0.92377 0.89571 0.97955 1.19503 0.95791 0.99999 1.01063 1.20875 0.96277 0.95821 0.95936 1.20775 0.92678 1.05973 1.04683 1.18239 0.85803 0.92366 0.92934 1.46699 1.04057 1.41362 1.41516 1.21640 0.85797 0.99912 0.97251 1.19337 0.96993 0.87243 0.85539 1.21671 1.50367 0.93514 0.91941 0.95964 1.25913 0.93933 1.04558 0.94428 1.70073 1.51478 1.38029 0.99159 0.85705 0.79233 0.78634 0.79351 1.19066 1.20497 1.16481 1.20847 0.99650 1.01009 1.02541 1.20925 0.90600 0.96981 0.98053 0.88578 0.91802 0.90302 0.91705 0.88941 0.90198 0.94189 0.92897 0.89775 0.89346 0.83607 0.87952 0.93427 0.85949 0.88227 0.91811 0.92652 0.90858 0.94520 0.95274 0.92317 0.84919 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 71.98 0.69 -0.76 16 2 C 0.07 1.15 3.18 30.60 0.10 1.25 16 3 C -0.17 -2.44 9.55 71.98 0.69 -1.75 16 4 O -0.35 -6.74 9.78 -51.36 -0.50 -7.24 16 5 C 0.46 10.65 7.25 71.23 0.52 11.17 16 6 O -0.54 -16.74 14.87 21.96 0.33 -16.41 16 7 C 0.09 1.71 3.13 44.17 0.14 1.84 16 8 H 0.10 1.40 7.80 -2.39 -0.02 1.39 16 9 C -0.13 -1.77 9.35 71.98 0.67 -1.10 16 10 N -0.68 -16.03 6.17 -499.48 -3.08 -19.11 16 11 C 0.12 2.47 5.61 85.56 0.48 2.95 16 12 C -0.16 -4.55 5.40 -19.84 -0.11 -4.65 16 13 C -0.07 -2.35 9.69 22.25 0.22 -2.13 16 14 C -0.22 -8.99 9.21 22.40 0.21 -8.78 16 15 C 0.21 8.55 6.55 38.21 0.25 8.80 16 16 N -0.63 -26.86 2.99 -726.54 -2.17 -29.03 16 17 C 0.10 3.30 10.19 127.77 1.30 4.60 16 18 C 0.23 11.19 3.98 85.63 0.34 11.53 16 19 C -0.54 -31.58 9.94 25.60 0.25 -31.32 16 20 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 21 C 0.01 0.56 5.47 84.66 0.46 1.02 16 22 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 23 Si 0.95 43.69 27.47 68.60 1.88 45.58 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 27 C -0.22 -7.22 9.21 22.40 0.21 -7.01 16 28 C -0.05 -1.32 9.69 22.25 0.22 -1.10 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.06 1.36 7.16 -2.39 -0.02 1.34 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.89 8.11 -2.38 -0.02 0.87 16 38 H 0.09 0.94 7.45 -2.39 -0.02 0.92 16 39 H 0.34 9.90 7.44 -89.69 -0.67 9.23 16 40 H 0.10 1.61 7.38 -2.39 -0.02 1.59 16 41 H 0.05 0.86 8.00 -2.39 -0.02 0.84 16 42 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.10 4.55 6.14 -2.91 -0.02 4.53 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 46 H 0.07 2.22 6.20 -2.38 -0.01 2.21 16 47 H 0.04 1.70 7.13 -2.38 -0.02 1.68 16 48 H 0.03 1.40 5.62 -2.39 -0.01 1.38 16 49 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 50 H 0.13 3.82 6.14 -2.91 -0.02 3.81 16 51 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -75.48 413.22 3.57 -71.91 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.19 Total: 29.80 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 6.63 Total: -15.45 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -4.96 Total: -108.19 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.18 Total: -23.65 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -75.48 3.57 -71.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825117920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.746 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds