Wall clock time and date at job start Tue Mar 31 2020 18:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47520 * 2 1 4 4 C 1.46498 * 120.00053 * 270.00421 * 3 2 1 5 5 C 1.50698 * 109.46884 * 269.99468 * 4 3 2 6 6 H 1.08005 * 120.00308 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00105 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99978 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99868 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46919 * 90.00068 * 9 7 5 11 11 H 1.48500 * 109.46794 * 209.99796 * 9 7 5 12 12 H 1.48496 * 109.47067 * 329.99578 * 9 7 5 13 13 C 1.34784 * 119.99931 * 89.99806 * 3 2 1 14 14 O 1.21283 * 119.99706 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99925 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47138 * 183.73857 * 15 13 3 17 17 C 1.46901 * 110.99830 * 294.25842 * 16 15 13 18 18 C 1.53006 * 109.47309 * 287.94290 * 17 16 15 19 19 C 1.46897 * 111.00120 * 58.21378 * 16 15 13 20 20 H 1.08998 * 109.47217 * 288.63108 * 19 16 15 21 21 C 1.52998 * 109.47112 * 48.62793 * 19 16 15 22 22 O 1.42900 * 109.47149 * 63.67057 * 21 19 16 23 23 C 1.50695 * 109.47380 * 168.62988 * 19 16 15 24 24 C 1.38238 * 119.99843 * 319.72526 * 23 19 16 25 25 C 1.38232 * 119.99970 * 179.78432 * 24 23 19 26 26 C 1.38241 * 120.00116 * 0.44489 * 25 24 23 27 27 C 1.38239 * 119.99723 * 359.80886 * 26 25 24 28 28 C 1.38232 * 120.00076 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46873 * 299.99640 * 1 2 3 30 30 H 1.08999 * 109.46544 * 59.99943 * 1 2 3 31 31 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47094 * 239.99945 * 2 1 3 33 33 H 1.09007 * 109.47152 * 120.00097 * 2 1 3 34 34 H 1.08997 * 109.46978 * 29.99370 * 4 3 2 35 35 H 1.09003 * 109.47436 * 149.99544 * 4 3 2 36 36 H 0.96999 * 120.00116 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.47080 * 63.73928 * 15 13 3 38 38 H 1.09004 * 109.47669 * 303.74233 * 15 13 3 39 39 H 1.08998 * 109.47384 * 167.94493 * 17 16 15 40 40 H 1.08997 * 109.46992 * 47.94497 * 17 16 15 41 41 H 1.09000 * 109.47123 * 180.81203 * 18 17 16 42 42 H 1.08994 * 109.47229 * 300.81943 * 18 17 16 43 43 H 1.09006 * 109.46708 * 60.81856 * 18 17 16 44 44 H 1.09000 * 109.47299 * 183.66781 * 21 19 16 45 45 H 1.09001 * 109.47476 * 303.67070 * 21 19 16 46 46 H 0.96703 * 114.00183 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.00050 * 0.02562 * 24 23 19 48 48 H 1.07996 * 120.00183 * 180.27328 * 25 24 23 49 49 H 1.07993 * 120.00151 * 179.82887 * 26 25 24 50 50 H 1.08000 * 120.00140 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.00364 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3430 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1265 -3.6175 9 14 5.9136 2.0963 -3.4170 10 1 5.9761 0.8757 -4.2606 11 1 6.3931 3.2639 -4.1992 12 1 6.7736 1.9154 -2.2200 13 6 2.2431 2.0165 1.1673 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.2245 2.2336 3.5874 17 6 3.6385 2.6247 3.6612 18 6 4.4690 1.4428 4.1658 19 6 1.3567 3.4140 3.4796 20 1 1.6967 4.0408 2.6552 21 6 -0.0831 2.9665 3.2199 22 8 -0.5580 2.2161 4.3394 23 6 1.4146 4.1991 4.7646 24 6 1.4321 3.5379 5.9784 25 6 1.4897 4.2579 7.1570 26 6 1.5206 5.6396 7.1221 27 6 1.4979 6.3009 5.9084 28 6 1.4448 5.5808 4.7297 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6756 3.5170 -4.4434 37 1 2.6698 0.4564 2.5594 38 1 0.9615 0.9531 2.5018 39 1 3.7479 3.4647 4.3472 40 1 3.9868 2.9169 2.6706 41 1 5.5162 1.7375 4.2343 42 1 4.1112 1.1413 5.1502 43 1 4.3712 0.6077 3.4722 44 1 -0.7154 3.8425 3.0751 45 1 -0.1144 2.3440 2.3256 46 1 -1.4666 1.8991 4.2436 47 1 1.4046 2.4586 6.0058 48 1 1.5078 3.7413 8.1051 49 1 1.5628 6.2022 8.0429 50 1 1.5216 7.3803 5.8810 51 1 1.4266 6.0974 3.7815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880460580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:21 Heat of formation + Delta-G solvation = -43.136341 kcal Electronic energy + Delta-G solvation = -30840.722777 eV Core-core repulsion = 26933.657516 eV Total energy + Delta-G solvation = -3907.065261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.33351 -38.94436 -37.18739 -36.02794 -35.06125 -32.86120 -32.22629 -30.68937 -30.56180 -30.12180 -28.27908 -27.18155 -26.02979 -23.23176 -22.94621 -22.48158 -22.37371 -21.33875 -19.98792 -18.20484 -17.51392 -16.91632 -16.55366 -16.45154 -16.05824 -15.54582 -15.10006 -14.70470 -14.57303 -14.45671 -14.18117 -13.90449 -13.67841 -13.43382 -13.29402 -13.17573 -12.67650 -12.56843 -12.40891 -12.25790 -12.13107 -12.01737 -11.81181 -11.58278 -11.32340 -11.15992 -11.04411 -10.94219 -10.83569 -10.79190 -10.61104 -10.50228 -10.41286 -10.16638 -9.87932 -9.67119 -9.56852 -8.73024 -8.51645 -8.47544 -7.75140 -7.68373 -6.08409 -4.13143 1.50127 1.61632 3.26604 3.28662 3.34137 3.39037 3.87264 3.91518 4.10945 4.38897 4.41548 4.83726 5.04436 5.09388 5.11005 5.23037 5.24382 5.25703 5.28573 5.31763 5.48522 5.51694 5.54274 5.58064 5.65375 5.69595 5.76927 5.77636 5.81443 5.85829 5.98489 6.08293 6.13751 6.17732 6.23998 6.25760 6.31807 6.41815 6.54197 6.61530 6.68947 6.85525 6.98579 7.16892 7.24427 7.28402 7.39141 7.50135 7.69343 7.87781 8.19399 8.36537 8.84984 9.02047 9.52219 10.99596 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.003491 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.201760 B = 8018.770068 C = 8662.493467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.474 3.526 14 O -0.542 6.542 15 C 0.027 3.973 16 N -0.496 5.496 17 C 0.033 3.967 18 C -0.142 4.142 19 C 0.107 3.893 20 H 0.100 0.900 21 C 0.084 3.916 22 O -0.553 6.553 23 C -0.064 4.064 24 C -0.067 4.067 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.118 4.118 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.369 0.631 47 H 0.133 0.867 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.116 0.884 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 -2.892 17.624 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.260 3.740 14 O -0.421 6.421 15 C -0.105 4.105 16 N -0.219 5.219 17 C -0.095 4.095 18 C -0.200 4.200 19 C -0.001 4.001 20 H 0.118 0.882 21 C 0.006 3.994 22 O -0.357 6.357 23 C -0.065 4.065 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.148 4.148 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.214 0.786 47 H 0.151 0.849 48 H 0.133 0.867 49 H 0.132 0.868 50 H 0.134 0.866 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.172 -2.294 18.092 19.597 hybrid contribution 0.595 0.140 -1.549 1.666 sum -6.577 -2.154 16.543 17.932 Atomic orbital electron populations 1.22215 0.96797 1.01528 1.02091 1.21427 0.93494 0.84257 1.02763 1.48425 1.62980 1.13174 1.08019 1.19245 0.96236 0.93537 0.78333 1.21410 0.96883 1.31862 1.06250 0.92573 1.24930 0.97821 0.94893 0.96412 1.69926 1.35697 1.33422 1.14317 0.86515 0.84712 0.77701 0.78614 1.20626 1.21086 1.19907 1.21670 0.78565 0.87504 0.86270 1.90570 1.46322 1.18306 1.86947 1.22463 1.03746 0.96931 0.87314 1.62480 1.05519 1.14440 1.39436 1.22297 0.87259 0.97662 1.02238 1.21746 0.98831 0.98276 1.01149 1.20975 0.91272 0.91999 0.95806 0.88234 1.22263 0.94088 0.94512 0.88537 1.86615 1.33277 1.73845 1.41980 1.19658 0.99278 0.92757 0.94780 1.21067 0.95826 1.00748 0.90910 1.21168 1.01801 0.94103 0.98250 1.21068 1.01273 0.94710 0.97478 1.21001 1.01779 0.99443 0.92538 1.21099 1.00449 0.93776 0.98310 0.93265 0.92075 0.92024 0.89925 0.91650 0.95216 0.94065 0.92727 0.88296 0.88189 0.91305 0.91345 0.92696 0.92450 0.93095 0.93569 0.93342 0.78607 0.84921 0.86702 0.86837 0.86600 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.20 37.16 0.38 -1.72 16 2 C 0.10 1.60 5.88 -4.04 -0.02 1.57 16 3 N -0.59 -11.90 2.46 -175.06 -0.43 -12.33 16 4 C 0.25 6.23 5.16 -5.20 -0.03 6.21 16 5 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.47 9.18 6.46 -10.98 -0.07 9.11 16 14 O -0.54 -12.49 11.33 5.56 0.06 -12.43 16 15 C 0.03 0.40 3.67 -4.98 -0.02 0.38 16 16 N -0.50 -7.34 3.72 -229.48 -0.85 -8.19 16 17 C 0.03 0.52 5.20 -3.82 -0.02 0.50 16 18 C -0.14 -1.90 9.95 37.16 0.37 -1.53 16 19 C 0.11 1.62 1.55 -68.87 -0.11 1.51 16 20 H 0.10 1.81 5.54 -51.93 -0.29 1.53 16 21 C 0.08 1.09 6.01 37.16 0.22 1.32 16 22 O -0.55 -6.34 12.05 -35.23 -0.42 -6.76 16 23 C -0.06 -0.91 3.55 -104.62 -0.37 -1.28 16 24 C -0.07 -0.90 8.22 -39.58 -0.33 -1.23 16 25 C -0.14 -1.61 10.05 -39.58 -0.40 -2.00 16 26 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 28 C -0.12 -1.61 9.67 -39.58 -0.38 -1.99 16 29 H 0.05 0.57 6.92 -51.93 -0.36 0.21 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.84 6.55 -51.92 -0.34 0.50 16 34 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 1.38 5.98 -51.92 -0.31 1.07 16 38 H 0.10 1.32 5.07 -51.93 -0.26 1.06 16 39 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 40 H 0.07 1.32 5.63 -51.93 -0.29 1.03 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.65 5.52 -51.93 -0.29 0.36 16 46 H 0.37 2.64 9.12 45.56 0.42 3.05 16 47 H 0.13 1.84 7.46 -52.49 -0.39 1.45 16 48 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.11 1.03 8.06 -52.49 -0.42 0.60 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 51 H 0.12 1.57 8.04 -52.49 -0.42 1.14 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -32.42 398.19 -9.31 -41.73 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.39 Total: 7.12 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.99 Total: -6.29 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.55 Total: -46.09 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.36 Total: -19.19 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.42 -9.31 -41.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.403 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds