Wall clock time and date at job start Tue Mar 31 2020 18:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47520 * 2 1 4 4 C 1.46498 * 120.00053 * 270.00421 * 3 2 1 5 5 C 1.50698 * 109.46884 * 269.99468 * 4 3 2 6 6 H 1.08005 * 120.00308 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00105 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99978 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99868 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46919 * 90.00068 * 9 7 5 11 11 H 1.48500 * 109.46794 * 209.99796 * 9 7 5 12 12 H 1.48496 * 109.47067 * 329.99578 * 9 7 5 13 13 C 1.34784 * 119.99931 * 89.99806 * 3 2 1 14 14 O 1.21283 * 119.99706 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99925 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47138 * 183.73857 * 15 13 3 17 17 C 1.46901 * 110.99830 * 294.25842 * 16 15 13 18 18 C 1.53006 * 109.47309 * 287.94290 * 17 16 15 19 19 C 1.46897 * 111.00120 * 58.21378 * 16 15 13 20 20 H 1.08998 * 109.47217 * 288.63108 * 19 16 15 21 21 C 1.52998 * 109.47112 * 48.62793 * 19 16 15 22 22 O 1.42900 * 109.47149 * 63.67057 * 21 19 16 23 23 C 1.50695 * 109.47380 * 168.62988 * 19 16 15 24 24 C 1.38238 * 119.99843 * 319.72526 * 23 19 16 25 25 C 1.38232 * 119.99970 * 179.78432 * 24 23 19 26 26 C 1.38241 * 120.00116 * 0.44489 * 25 24 23 27 27 C 1.38239 * 119.99723 * 359.80886 * 26 25 24 28 28 C 1.38232 * 120.00076 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46873 * 299.99640 * 1 2 3 30 30 H 1.08999 * 109.46544 * 59.99943 * 1 2 3 31 31 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47094 * 239.99945 * 2 1 3 33 33 H 1.09007 * 109.47152 * 120.00097 * 2 1 3 34 34 H 1.08997 * 109.46978 * 29.99370 * 4 3 2 35 35 H 1.09003 * 109.47436 * 149.99544 * 4 3 2 36 36 H 0.96999 * 120.00116 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.47080 * 63.73928 * 15 13 3 38 38 H 1.09004 * 109.47669 * 303.74233 * 15 13 3 39 39 H 1.08998 * 109.47384 * 167.94493 * 17 16 15 40 40 H 1.08997 * 109.46992 * 47.94497 * 17 16 15 41 41 H 1.09000 * 109.47123 * 180.81203 * 18 17 16 42 42 H 1.08994 * 109.47229 * 300.81943 * 18 17 16 43 43 H 1.09006 * 109.46708 * 60.81856 * 18 17 16 44 44 H 1.09000 * 109.47299 * 183.66781 * 21 19 16 45 45 H 1.09001 * 109.47476 * 303.67070 * 21 19 16 46 46 H 0.96703 * 114.00183 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.00050 * 0.02562 * 24 23 19 48 48 H 1.07996 * 120.00183 * 180.27328 * 25 24 23 49 49 H 1.07993 * 120.00151 * 179.82887 * 26 25 24 50 50 H 1.08000 * 120.00140 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.00364 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3430 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1265 -3.6175 9 14 5.9136 2.0963 -3.4170 10 1 5.9761 0.8757 -4.2606 11 1 6.3931 3.2639 -4.1992 12 1 6.7736 1.9154 -2.2200 13 6 2.2431 2.0165 1.1673 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.2245 2.2336 3.5874 17 6 3.6385 2.6247 3.6612 18 6 4.4690 1.4428 4.1658 19 6 1.3567 3.4140 3.4796 20 1 1.6967 4.0408 2.6552 21 6 -0.0831 2.9665 3.2199 22 8 -0.5580 2.2161 4.3394 23 6 1.4146 4.1991 4.7646 24 6 1.4321 3.5379 5.9784 25 6 1.4897 4.2579 7.1570 26 6 1.5206 5.6396 7.1221 27 6 1.4979 6.3009 5.9084 28 6 1.4448 5.5808 4.7297 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6756 3.5170 -4.4434 37 1 2.6698 0.4564 2.5594 38 1 0.9615 0.9531 2.5018 39 1 3.7479 3.4647 4.3472 40 1 3.9868 2.9169 2.6706 41 1 5.5162 1.7375 4.2343 42 1 4.1112 1.1413 5.1502 43 1 4.3712 0.6077 3.4722 44 1 -0.7154 3.8425 3.0751 45 1 -0.1144 2.3440 2.3256 46 1 -1.4666 1.8991 4.2436 47 1 1.4046 2.4586 6.0058 48 1 1.5078 3.7413 8.1051 49 1 1.5628 6.2022 8.0429 50 1 1.5216 7.3803 5.8810 51 1 1.4266 6.0974 3.7815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880460580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:20 Heat of formation + Delta-G solvation = -64.865362 kcal Electronic energy + Delta-G solvation = -30841.665018 eV Core-core repulsion = 26933.657516 eV Total energy + Delta-G solvation = -3908.007502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.65960 -40.13223 -38.36146 -37.22812 -36.49324 -34.93997 -33.28935 -31.90027 -31.65608 -31.45447 -29.70831 -28.52301 -27.48761 -24.98794 -24.15848 -23.70855 -23.38080 -22.57066 -21.19786 -19.68647 -18.68874 -18.47652 -18.00195 -17.89013 -17.19603 -17.07861 -16.41308 -16.14503 -15.98135 -15.62338 -15.47132 -15.06059 -14.97443 -14.66644 -14.55715 -14.30411 -14.11850 -13.78474 -13.60807 -13.59879 -13.29256 -13.26068 -13.10506 -13.10134 -12.85474 -12.67965 -12.56156 -12.40634 -12.17192 -12.10848 -11.93758 -11.83099 -11.76910 -11.57622 -11.52484 -11.12155 -10.84255 -10.66794 -9.70559 -9.51525 -9.41624 -9.10722 -8.24936 -6.39583 0.52243 0.64250 1.33097 1.35900 1.45945 1.78250 2.29234 2.44836 2.77251 3.03503 3.04524 3.42786 3.72351 3.79114 4.03550 4.08872 4.14651 4.16370 4.24823 4.34798 4.37551 4.41218 4.43197 4.48833 4.50522 4.63186 4.66695 4.68949 4.76787 4.81769 4.91939 4.94678 5.00494 5.04329 5.04605 5.10014 5.17580 5.20242 5.31559 5.36803 5.37771 5.56427 5.65188 5.72791 5.78793 5.85050 5.98246 6.04932 6.10101 6.24069 6.68076 6.80365 6.97784 7.26421 7.47598 8.81720 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.003491 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.201760 B = 8018.770068 C = 8662.493467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.468 3.532 14 O -0.586 6.586 15 C 0.040 3.960 16 N -0.480 5.480 17 C 0.038 3.962 18 C -0.135 4.135 19 C 0.107 3.893 20 H 0.059 0.941 21 C 0.094 3.906 22 O -0.556 6.556 23 C -0.077 4.077 24 C -0.074 4.074 25 C -0.134 4.134 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.141 4.141 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.018 0.982 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.390 0.610 47 H 0.130 0.870 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.134 0.866 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 -4.887 20.269 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.256 3.744 14 O -0.468 6.468 15 C -0.091 4.091 16 N -0.202 5.202 17 C -0.090 4.090 18 C -0.192 4.192 19 C -0.001 4.001 20 H 0.077 0.923 21 C 0.016 3.984 22 O -0.362 6.362 23 C -0.077 4.077 24 C -0.092 4.092 25 C -0.152 4.152 26 C -0.144 4.144 27 C -0.151 4.151 28 C -0.159 4.159 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.036 0.964 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.239 0.761 47 H 0.148 0.852 48 H 0.159 0.841 49 H 0.161 0.839 50 H 0.152 0.848 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.312 -4.337 20.758 22.431 hybrid contribution 0.575 0.822 -2.316 2.524 sum -6.738 -3.515 18.441 19.946 Atomic orbital electron populations 1.22146 0.94440 1.03614 1.01546 1.21755 0.95435 0.81457 1.03846 1.48449 1.63410 1.14993 1.06387 1.18628 0.95040 0.91360 0.80657 1.21688 0.97916 1.31809 1.06422 0.93084 1.25833 1.02229 0.94506 0.96502 1.70047 1.37721 1.34248 1.14778 0.85457 0.79201 0.78210 0.78205 1.18746 1.20729 1.19874 1.22590 0.77334 0.87110 0.87386 1.90576 1.48012 1.20534 1.87663 1.22562 1.05627 0.96707 0.84217 1.62594 1.04903 1.14261 1.38459 1.22198 0.88166 0.98795 0.99810 1.21695 0.98708 0.96961 1.01850 1.20848 0.92450 0.91676 0.95161 0.92333 1.22012 0.92926 0.94725 0.88774 1.86560 1.35141 1.73517 1.41022 1.19622 1.00509 0.92883 0.94732 1.21054 0.96481 1.00636 0.91023 1.21487 1.00519 0.94479 0.98698 1.21427 0.99887 0.94862 0.98188 1.21271 1.01014 1.00499 0.92269 1.21185 1.01928 0.94037 0.98777 0.92126 0.94348 0.88508 0.91097 0.88269 0.96392 0.98795 0.92475 0.86410 0.85628 0.91871 0.95536 0.92129 0.90724 0.92917 0.93560 0.93752 0.76143 0.85202 0.84138 0.83906 0.84767 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.20 71.98 0.73 -2.97 16 2 C 0.10 2.87 5.88 86.38 0.51 3.37 16 3 N -0.60 -24.76 2.46 -826.15 -2.03 -26.79 16 4 C 0.26 14.21 5.16 85.63 0.44 14.66 16 5 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.47 18.69 6.46 87.65 0.57 19.26 16 14 O -0.59 -28.97 11.33 -3.04 -0.03 -29.01 16 15 C 0.04 1.15 3.67 85.55 0.31 1.46 16 16 N -0.48 -14.05 3.72 -879.93 -3.28 -17.32 16 17 C 0.04 1.22 5.20 86.31 0.45 1.67 16 18 C -0.13 -3.40 9.95 71.98 0.72 -2.68 16 19 C 0.11 3.31 1.55 44.17 0.07 3.38 16 20 H 0.06 2.33 5.54 -2.39 -0.01 2.32 16 21 C 0.09 2.42 6.01 71.98 0.43 2.85 16 22 O -0.56 -11.57 12.05 -148.98 -1.80 -13.36 16 23 C -0.08 -2.21 3.55 -19.87 -0.07 -2.28 16 24 C -0.07 -1.86 8.22 22.27 0.18 -1.68 16 25 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 26 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 27 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 28 C -0.14 -3.97 9.67 22.27 0.22 -3.75 16 29 H 0.06 1.27 6.92 -2.39 -0.02 1.25 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 33 H 0.10 2.25 6.55 -2.38 -0.02 2.23 16 34 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 35 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.12 2.98 5.98 -2.38 -0.01 2.97 16 38 H 0.13 2.99 5.07 -2.39 -0.01 2.97 16 39 H 0.06 2.06 6.91 -2.39 -0.02 2.04 16 40 H 0.03 1.08 5.63 -2.39 -0.01 1.07 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.30 6.70 -2.38 -0.02 1.29 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 45 H 0.04 1.16 5.52 -2.39 -0.01 1.15 16 46 H 0.39 4.50 9.12 -74.06 -0.68 3.82 16 47 H 0.13 3.33 7.46 -2.91 -0.02 3.31 16 48 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 49 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 50 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 51 H 0.11 3.10 8.04 -2.91 -0.02 3.08 16 Total: -1.00 -75.12 398.19 1.36 -73.76 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.25 Total: 26.05 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.93 Total: -4.46 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -5.02 Total: -100.27 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.83 Total: -42.37 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -75.12 1.36 -73.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.899 kcal (2) G-P(sol) polarization free energy of solvation -75.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds