Wall clock time and date at job start Tue Mar 31 2020 18:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.47209 * 2 1 4 4 C 1.46489 * 120.00079 * 270.00362 * 3 2 1 5 5 C 1.50701 * 109.47144 * 269.99573 * 4 3 2 6 6 H 1.08004 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99894 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00191 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46888 * 90.00064 * 9 7 5 11 11 H 1.48506 * 109.47264 * 210.00078 * 9 7 5 12 12 H 1.48497 * 109.46934 * 330.00108 * 9 7 5 13 13 C 1.34776 * 119.99578 * 90.00413 * 3 2 1 14 14 O 1.21277 * 119.99707 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00246 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47270 * 180.02562 * 15 13 3 17 17 C 1.46897 * 111.00063 * 288.20885 * 16 15 13 18 18 C 1.46897 * 111.00149 * 164.24883 * 16 15 13 19 19 H 1.08998 * 109.46953 * 64.39929 * 18 16 15 20 20 C 1.53003 * 109.47069 * 304.40030 * 18 16 15 21 21 O 1.42898 * 109.47113 * 296.90219 * 20 18 16 22 22 C 1.50696 * 109.47504 * 184.39861 * 18 16 15 23 23 C 1.38259 * 119.99413 * 24.99918 * 22 18 16 24 24 C 1.38218 * 119.99854 * 180.02562 * 23 22 18 25 25 C 1.38261 * 119.99754 * 359.97438 * 24 23 22 26 26 C 1.38211 * 120.00119 * 359.96956 * 25 24 23 27 27 C 1.38211 * 120.00318 * 204.73227 * 22 18 16 28 28 C 1.50692 * 119.99886 * 359.97438 * 27 22 18 29 29 H 1.08999 * 109.47049 * 299.99412 * 1 2 3 30 30 H 1.08992 * 109.46939 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47091 * 240.00111 * 2 1 3 33 33 H 1.09000 * 109.47480 * 120.00474 * 2 1 3 34 34 H 1.09002 * 109.47394 * 29.99679 * 4 3 2 35 35 H 1.08997 * 109.47280 * 149.99728 * 4 3 2 36 36 H 0.97008 * 120.00472 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47399 * 300.00635 * 15 13 3 38 38 H 1.09003 * 109.46823 * 60.01144 * 15 13 3 39 39 H 1.08995 * 109.47504 * 59.99939 * 17 16 15 40 40 H 1.09002 * 109.46771 * 179.97438 * 17 16 15 41 41 H 1.08995 * 109.47163 * 299.99502 * 17 16 15 42 42 H 1.09001 * 109.47031 * 56.90307 * 20 18 16 43 43 H 1.09006 * 109.47129 * 176.90731 * 20 18 16 44 44 H 0.96702 * 113.99828 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.00647 * 359.97438 * 23 22 18 46 46 H 1.07995 * 120.00285 * 179.97438 * 24 23 22 47 47 H 1.08004 * 120.00111 * 179.97438 * 25 24 23 48 48 H 1.08004 * 120.00030 * 179.97438 * 26 25 24 49 49 H 1.09005 * 109.47314 * 90.00451 * 28 27 22 50 50 H 1.09003 * 109.47190 * 210.00504 * 28 27 22 51 51 H 1.09008 * 109.47287 * 330.00081 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1493 2.3907 -2.8774 8 7 5.3912 2.1836 -3.2573 9 14 3.0134 3.4373 -3.9279 10 1 3.1172 4.8572 -3.5055 11 1 3.4064 3.3152 -5.3548 12 1 1.6136 2.9715 -3.7584 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5890 17 6 3.7600 2.4017 3.7112 18 6 1.7374 1.7072 4.8467 19 1 2.2038 0.7568 5.1059 20 6 0.2301 1.5061 4.6772 21 8 -0.3911 2.7646 4.4084 22 6 1.9904 2.7071 5.9453 23 6 2.1811 4.0410 5.6355 24 6 2.4136 4.9581 6.6430 25 6 2.4551 4.5417 7.9608 26 6 2.2633 3.2084 8.2706 27 6 2.0263 2.2918 7.2631 28 6 1.8119 0.8390 7.6012 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1383 36 1 5.7174 2.5742 -4.0832 37 1 0.9434 1.0124 2.5299 38 1 2.6214 0.4186 2.5302 39 1 4.1468 2.8375 2.7901 40 1 3.9673 3.0724 4.5450 41 1 4.2423 1.4406 3.8890 42 1 0.0456 0.8250 3.8465 43 1 -0.1853 1.0841 5.5924 44 1 -1.3493 2.7127 4.2890 45 1 2.1491 4.3663 4.6062 46 1 2.5630 6.0000 6.4011 47 1 2.6372 5.2582 8.7481 48 1 2.2961 2.8831 9.2999 49 1 2.7709 0.3208 7.6023 50 1 1.3546 0.7592 8.5875 51 1 1.1550 0.3861 6.8585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886433683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:09 Heat of formation + Delta-G solvation = -35.121559 kcal Electronic energy + Delta-G solvation = -30280.301123 eV Core-core repulsion = 26373.583410 eV Total energy + Delta-G solvation = -3906.717714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.27928 -39.09760 -37.43187 -35.88289 -35.14127 -33.13859 -32.70260 -31.48025 -30.32225 -29.05333 -28.65438 -27.14215 -26.62635 -24.28874 -23.16633 -22.96118 -22.06769 -21.17402 -19.87967 -18.36034 -17.57268 -16.96328 -16.88917 -16.32953 -15.97134 -15.58065 -15.14919 -14.86861 -14.72415 -14.37595 -14.04428 -13.89318 -13.73642 -13.44673 -13.35046 -13.15118 -12.95771 -12.90251 -12.61975 -12.46804 -12.40764 -12.17708 -12.04613 -11.90625 -11.63785 -11.49972 -11.35228 -11.13955 -10.94640 -10.89260 -10.75055 -10.62331 -10.46636 -10.11800 -9.94059 -9.50996 -8.94508 -8.66024 -8.56444 -8.56113 -8.08732 -7.64616 -6.06336 -4.04598 1.34653 1.48454 3.31300 3.37183 3.39688 3.45036 3.53800 3.79804 4.11360 4.21515 4.42294 4.57759 4.77143 4.87440 4.95062 5.05511 5.06826 5.12915 5.16571 5.22361 5.26517 5.29793 5.37840 5.39067 5.41827 5.53785 5.55838 5.58094 5.64326 5.71203 5.76363 5.80452 5.84286 5.96181 6.05098 6.14920 6.18558 6.38365 6.39472 6.48826 6.62631 6.68180 6.74783 6.97811 7.07237 7.11020 7.19837 7.43261 7.62006 7.65075 8.34106 8.50592 8.96356 9.11458 9.54719 11.07123 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003047 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.244411 B = 9187.282047 C = 9869.136315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.219 3.781 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.512 3.488 14 O -0.519 6.519 15 C 0.032 3.968 16 N -0.504 5.504 17 C 0.018 3.982 18 C 0.124 3.876 19 H 0.061 0.939 20 C 0.083 3.917 21 O -0.545 6.545 22 C -0.069 4.069 23 C -0.069 4.069 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.089 4.089 28 C -0.117 4.117 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.018 0.982 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.371 0.629 45 H 0.141 0.859 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 -5.135 21.621 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.298 3.702 14 O -0.394 6.394 15 C -0.099 4.099 16 N -0.228 5.228 17 C -0.129 4.129 18 C 0.015 3.985 19 H 0.078 0.922 20 C 0.005 3.995 21 O -0.348 6.348 22 C -0.069 4.069 23 C -0.087 4.087 24 C -0.152 4.152 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.089 4.089 28 C -0.174 4.174 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.217 0.783 45 H 0.159 0.841 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.265 -3.806 21.402 24.483 hybrid contribution -0.617 -0.585 -0.522 0.998 sum -11.882 -4.391 20.880 24.422 Atomic orbital electron populations 1.22237 0.96899 1.01400 1.02241 1.21411 0.93309 0.84138 1.02889 1.47928 1.64890 1.13234 1.06993 1.19598 0.97112 0.93410 0.80093 1.21339 0.95406 1.32708 1.07043 0.90890 1.24855 0.94980 0.95820 0.97380 1.69900 1.15166 1.45117 1.23581 0.86848 0.81472 0.81683 0.79668 1.19892 1.21162 1.19090 1.20070 0.78565 0.87058 0.84512 1.90651 1.44306 1.17689 1.86741 1.22184 1.02409 0.94240 0.91026 1.61501 1.13232 1.46747 1.01352 1.22614 0.86108 0.99822 1.04394 1.20626 0.93607 0.95265 0.88996 0.92185 1.22277 0.92140 0.86497 0.98622 1.86699 1.24357 1.29389 1.94402 1.19348 1.00724 0.94663 0.92173 1.21244 0.94956 0.92002 1.00490 1.21213 1.01349 0.99734 0.92898 1.21088 1.00501 0.95734 0.96516 1.20847 1.02391 0.93213 0.98335 1.19669 1.00707 0.95792 0.92747 1.20856 1.01980 0.92636 1.01925 0.93114 0.92145 0.92097 0.89790 0.91762 0.95450 0.94612 0.92619 0.88310 0.92517 0.89150 0.91104 0.96344 0.93223 0.93356 0.78337 0.84117 0.86337 0.86616 0.86597 0.91288 0.91637 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.21 2.46 -175.06 -0.43 -12.64 16 4 C 0.22 5.37 4.23 -5.20 -0.02 5.35 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.52 16 6 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 9 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.51 10.49 7.42 -10.99 -0.08 10.41 16 14 O -0.52 -12.89 14.37 5.56 0.08 -12.81 16 15 C 0.03 0.49 3.84 -4.97 -0.02 0.47 16 16 N -0.50 -7.59 3.22 -237.74 -0.77 -8.35 16 17 C 0.02 0.29 8.62 60.06 0.52 0.80 16 18 C 0.12 1.47 1.38 -68.87 -0.10 1.38 16 19 H 0.06 0.64 7.01 -51.93 -0.36 0.28 16 20 C 0.08 0.83 6.15 37.16 0.23 1.06 16 21 O -0.55 -6.41 12.92 -35.23 -0.46 -6.86 16 22 C -0.07 -0.86 3.90 -104.63 -0.41 -1.26 16 23 C -0.07 -0.95 7.37 -39.58 -0.29 -1.24 16 24 C -0.13 -1.63 10.05 -39.58 -0.40 -2.02 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.13 -1.34 9.70 -39.58 -0.38 -1.73 16 27 C -0.09 -0.96 5.88 -104.63 -0.62 -1.57 16 28 C -0.12 -0.93 9.22 36.00 0.33 -0.60 16 29 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 34 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 35 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.10 1.26 4.44 -51.93 -0.23 1.02 16 38 H 0.06 0.78 7.29 -51.93 -0.38 0.40 16 39 H 0.09 1.73 6.40 -51.93 -0.33 1.40 16 40 H 0.07 1.05 5.73 -51.93 -0.30 0.76 16 41 H 0.02 0.26 8.11 -51.93 -0.42 -0.16 16 42 H 0.05 0.45 5.85 -51.93 -0.30 0.14 16 43 H 0.05 0.39 6.82 -51.93 -0.35 0.04 16 44 H 0.37 2.70 9.12 45.56 0.42 3.12 16 45 H 0.14 2.28 7.04 -52.49 -0.37 1.91 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 48 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 51 H 0.06 0.47 5.38 -51.92 -0.28 0.19 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -35.90 396.48 -8.52 -44.42 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.32 Total: 4.48 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.72 Total: -4.24 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.42 Total: -48.11 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.38 Total: -19.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.90 -8.52 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886433683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.301 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds