Wall clock time and date at job start Tue Mar 31 2020 18:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.47209 * 2 1 4 4 C 1.46489 * 120.00079 * 270.00362 * 3 2 1 5 5 C 1.50701 * 109.47144 * 269.99573 * 4 3 2 6 6 H 1.08004 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99894 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00191 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46888 * 90.00064 * 9 7 5 11 11 H 1.48506 * 109.47264 * 210.00078 * 9 7 5 12 12 H 1.48497 * 109.46934 * 330.00108 * 9 7 5 13 13 C 1.34776 * 119.99578 * 90.00413 * 3 2 1 14 14 O 1.21277 * 119.99707 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00246 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47270 * 180.02562 * 15 13 3 17 17 C 1.46897 * 111.00063 * 288.20885 * 16 15 13 18 18 C 1.46897 * 111.00149 * 164.24883 * 16 15 13 19 19 H 1.08998 * 109.46953 * 64.39929 * 18 16 15 20 20 C 1.53003 * 109.47069 * 304.40030 * 18 16 15 21 21 O 1.42898 * 109.47113 * 296.90219 * 20 18 16 22 22 C 1.50696 * 109.47504 * 184.39861 * 18 16 15 23 23 C 1.38259 * 119.99413 * 24.99918 * 22 18 16 24 24 C 1.38218 * 119.99854 * 180.02562 * 23 22 18 25 25 C 1.38261 * 119.99754 * 359.97438 * 24 23 22 26 26 C 1.38211 * 120.00119 * 359.96956 * 25 24 23 27 27 C 1.38211 * 120.00318 * 204.73227 * 22 18 16 28 28 C 1.50692 * 119.99886 * 359.97438 * 27 22 18 29 29 H 1.08999 * 109.47049 * 299.99412 * 1 2 3 30 30 H 1.08992 * 109.46939 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47091 * 240.00111 * 2 1 3 33 33 H 1.09000 * 109.47480 * 120.00474 * 2 1 3 34 34 H 1.09002 * 109.47394 * 29.99679 * 4 3 2 35 35 H 1.08997 * 109.47280 * 149.99728 * 4 3 2 36 36 H 0.97008 * 120.00472 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47399 * 300.00635 * 15 13 3 38 38 H 1.09003 * 109.46823 * 60.01144 * 15 13 3 39 39 H 1.08995 * 109.47504 * 59.99939 * 17 16 15 40 40 H 1.09002 * 109.46771 * 179.97438 * 17 16 15 41 41 H 1.08995 * 109.47163 * 299.99502 * 17 16 15 42 42 H 1.09001 * 109.47031 * 56.90307 * 20 18 16 43 43 H 1.09006 * 109.47129 * 176.90731 * 20 18 16 44 44 H 0.96702 * 113.99828 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.00647 * 359.97438 * 23 22 18 46 46 H 1.07995 * 120.00285 * 179.97438 * 24 23 22 47 47 H 1.08004 * 120.00111 * 179.97438 * 25 24 23 48 48 H 1.08004 * 120.00030 * 179.97438 * 26 25 24 49 49 H 1.09005 * 109.47314 * 90.00451 * 28 27 22 50 50 H 1.09003 * 109.47190 * 210.00504 * 28 27 22 51 51 H 1.09008 * 109.47287 * 330.00081 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1493 2.3907 -2.8774 8 7 5.3912 2.1836 -3.2573 9 14 3.0134 3.4373 -3.9279 10 1 3.1172 4.8572 -3.5055 11 1 3.4064 3.3152 -5.3548 12 1 1.6136 2.9715 -3.7584 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5890 17 6 3.7600 2.4017 3.7112 18 6 1.7374 1.7072 4.8467 19 1 2.2038 0.7568 5.1059 20 6 0.2301 1.5061 4.6772 21 8 -0.3911 2.7646 4.4084 22 6 1.9904 2.7071 5.9453 23 6 2.1811 4.0410 5.6355 24 6 2.4136 4.9581 6.6430 25 6 2.4551 4.5417 7.9608 26 6 2.2633 3.2084 8.2706 27 6 2.0263 2.2918 7.2631 28 6 1.8119 0.8390 7.6012 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1383 36 1 5.7174 2.5742 -4.0832 37 1 0.9434 1.0124 2.5299 38 1 2.6214 0.4186 2.5302 39 1 4.1468 2.8375 2.7901 40 1 3.9673 3.0724 4.5450 41 1 4.2423 1.4406 3.8890 42 1 0.0456 0.8250 3.8465 43 1 -0.1853 1.0841 5.5924 44 1 -1.3493 2.7127 4.2890 45 1 2.1491 4.3663 4.6062 46 1 2.5630 6.0000 6.4011 47 1 2.6372 5.2582 8.7481 48 1 2.2961 2.8831 9.2999 49 1 2.7709 0.3208 7.6023 50 1 1.3546 0.7592 8.5875 51 1 1.1550 0.3861 6.8585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886433683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:08 Heat of formation + Delta-G solvation = -61.251273 kcal Electronic energy + Delta-G solvation = -30281.434193 eV Core-core repulsion = 26373.583410 eV Total energy + Delta-G solvation = -3907.850783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33040 -40.45620 -38.42466 -37.07469 -36.53247 -34.86030 -33.93507 -32.49785 -31.81989 -30.26751 -29.85340 -28.47619 -27.59109 -25.46880 -24.50936 -24.18389 -23.43677 -22.17134 -20.81305 -19.83185 -19.10779 -18.44941 -18.20395 -17.37321 -17.17243 -16.97164 -16.28741 -16.23963 -15.84271 -15.63050 -15.28436 -15.16082 -14.70087 -14.64659 -14.52242 -14.38122 -14.16410 -13.97576 -13.82747 -13.67674 -13.51661 -13.42302 -13.20143 -13.11658 -12.91105 -12.76676 -12.56798 -12.52812 -12.36453 -12.12501 -12.02305 -11.86954 -11.75894 -11.74356 -11.57532 -10.83844 -10.71585 -10.54360 -9.54377 -9.41196 -9.35822 -9.20895 -8.34826 -6.39128 0.49888 0.60390 1.30600 1.35472 1.43383 1.88852 2.19711 2.30019 2.87346 2.96477 2.99920 3.41966 3.70992 3.76135 4.03155 4.04985 4.11924 4.14257 4.18403 4.28090 4.30687 4.39347 4.42271 4.43774 4.53535 4.60388 4.63068 4.68094 4.71007 4.73712 4.80970 4.86471 4.93171 4.97210 5.01210 5.02569 5.05476 5.06647 5.24723 5.37451 5.40119 5.47569 5.64219 5.69173 5.72251 5.76212 5.93428 6.14964 6.24338 6.26780 6.61831 6.79281 7.04795 7.22402 7.53905 8.82203 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003047 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.244411 B = 9187.282047 C = 9869.136315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.229 3.771 5 C -0.532 4.532 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.047 3.953 16 N -0.523 5.523 17 C 0.030 3.970 18 C 0.122 3.878 19 H 0.081 0.919 20 C 0.082 3.918 21 O -0.575 6.575 22 C -0.079 4.079 23 C -0.092 4.092 24 C -0.150 4.150 25 C -0.123 4.123 26 C -0.131 4.131 27 C -0.091 4.091 28 C -0.117 4.117 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.013 0.987 36 H 0.268 0.732 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.388 0.612 45 H 0.104 0.896 46 H 0.120 0.880 47 H 0.138 0.862 48 H 0.144 0.856 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.960 -7.297 23.760 29.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.337 5.337 4 C 0.106 3.894 5 C -0.571 4.571 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.288 3.712 14 O -0.455 6.455 15 C -0.084 4.084 16 N -0.247 5.247 17 C -0.118 4.118 18 C 0.014 3.986 19 H 0.098 0.902 20 C 0.004 3.996 21 O -0.381 6.381 22 C -0.079 4.079 23 C -0.110 4.110 24 C -0.168 4.168 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.091 4.091 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.149 0.851 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.237 0.763 45 H 0.122 0.878 46 H 0.138 0.862 47 H 0.156 0.844 48 H 0.161 0.839 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.236 -6.030 23.562 28.181 hybrid contribution 0.370 0.069 -1.085 1.148 sum -13.866 -5.961 22.477 27.074 Atomic orbital electron populations 1.22156 0.93860 1.03662 1.02065 1.21771 0.95733 0.81163 1.03792 1.48062 1.64811 1.15169 1.05655 1.19215 0.94644 0.92814 0.82707 1.21568 0.97101 1.31865 1.06578 0.95389 1.25833 0.96685 0.97185 0.98984 1.70050 1.17387 1.46674 1.24507 0.85734 0.80537 0.78949 0.77839 1.20477 1.19852 1.16162 1.21146 0.77118 0.86705 0.86202 1.90624 1.46726 1.20453 1.87704 1.22108 1.04635 0.93707 0.87901 1.61366 1.12442 1.47894 1.02998 1.22374 0.87289 1.00192 1.01990 1.20812 0.95093 0.95674 0.87012 0.90151 1.22392 0.90566 0.86122 1.00517 1.86672 1.26112 1.30740 1.94613 1.19470 1.01077 0.94028 0.93360 1.21034 0.97426 0.93510 0.99078 1.21337 1.02064 0.99787 0.93654 1.21369 0.99786 0.96805 0.96150 1.21246 1.01100 0.92863 0.99690 1.20015 0.99577 0.97624 0.91885 1.20925 1.02773 0.90399 1.03211 0.91983 0.93663 0.88528 0.91083 0.88790 0.93559 0.96906 0.92310 0.85071 0.90560 0.93703 0.90951 0.94903 0.91642 0.90708 0.76345 0.87758 0.86208 0.84388 0.83860 0.90557 0.89898 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.24 71.98 0.74 -2.61 16 2 C 0.10 2.80 5.93 86.38 0.51 3.31 16 3 N -0.60 -24.82 2.46 -826.17 -2.03 -26.85 16 4 C 0.23 11.45 4.23 85.64 0.36 11.82 16 5 C -0.53 -32.01 9.94 25.60 0.25 -31.76 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.66 5.47 84.65 0.46 1.12 16 8 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 9 Si 0.95 45.71 27.47 68.60 1.88 47.59 16 10 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 13 C 0.50 20.87 7.42 87.66 0.65 21.52 16 14 O -0.58 -30.36 14.37 -3.02 -0.04 -30.40 16 15 C 0.05 1.34 3.84 85.56 0.33 1.67 16 16 N -0.52 -15.63 3.22 -906.06 -2.92 -18.55 16 17 C 0.03 0.97 8.62 127.69 1.10 2.07 16 18 C 0.12 2.65 1.38 44.17 0.06 2.71 16 19 H 0.08 1.43 7.01 -2.39 -0.02 1.41 16 20 C 0.08 1.37 6.15 71.98 0.44 1.82 16 21 O -0.57 -12.57 12.92 -148.98 -1.93 -14.50 16 22 C -0.08 -1.88 3.90 -19.87 -0.08 -1.96 16 23 C -0.09 -2.64 7.37 22.27 0.16 -2.48 16 24 C -0.15 -3.75 10.05 22.27 0.22 -3.52 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 26 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 27 C -0.09 -1.72 5.88 -19.87 -0.12 -1.83 16 28 C -0.12 -1.38 9.22 71.23 0.66 -0.72 16 29 H 0.06 1.17 7.22 -2.39 -0.02 1.16 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 33 H 0.09 2.12 6.44 -2.39 -0.02 2.10 16 34 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 35 H 0.01 0.70 6.85 -2.39 -0.02 0.69 16 36 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 37 H 0.13 2.88 4.44 -2.39 -0.01 2.87 16 38 H 0.08 1.91 7.29 -2.39 -0.02 1.89 16 39 H 0.04 1.87 6.40 -2.39 -0.02 1.85 16 40 H 0.07 2.30 5.73 -2.39 -0.01 2.28 16 41 H 0.03 0.94 8.11 -2.39 -0.02 0.92 16 42 H 0.07 0.88 5.85 -2.39 -0.01 0.86 16 43 H 0.07 0.88 6.82 -2.38 -0.02 0.86 16 44 H 0.39 4.88 9.12 -74.06 -0.68 4.21 16 45 H 0.10 3.71 7.04 -2.91 -0.02 3.69 16 46 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 48 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 49 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 51 H 0.07 0.74 5.38 -2.38 -0.01 0.73 16 Total: -1.00 -85.32 396.48 1.67 -83.65 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.21 Total: 22.84 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 6.20 Total: -3.22 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.65 Total: -105.97 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.97 Total: -44.90 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.59 kcal Total: -85.32 1.67 -83.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886433683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.399 kcal (2) G-P(sol) polarization free energy of solvation -85.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds