Wall clock time and date at job start Tue Mar 31 2020 18:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47459 * 2 1 4 4 C 1.46496 * 120.00056 * 276.60263 * 3 2 1 5 5 C 1.50699 * 109.47024 * 269.99766 * 4 3 2 6 6 H 1.07996 * 120.00489 * 0.02562 * 5 4 3 7 7 C 1.37888 * 119.99972 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00047 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99731 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47338 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46951 * 120.00353 * 9 7 5 12 12 H 1.48500 * 109.46819 * 239.99705 * 9 7 5 13 13 C 1.34780 * 120.00020 * 96.60270 * 3 2 1 14 14 O 1.21283 * 119.99692 * 185.73793 * 13 3 2 15 15 C 1.50696 * 119.99913 * 5.72916 * 13 3 2 16 16 H 1.08995 * 109.47281 * 32.02929 * 15 13 3 17 17 N 1.46903 * 109.47169 * 152.02669 * 15 13 3 18 18 C 1.46889 * 110.99984 * 275.74412 * 17 15 13 19 19 C 1.53000 * 109.47424 * 274.71190 * 18 17 15 20 20 C 1.53004 * 109.47322 * 154.71193 * 18 17 15 21 21 C 1.50708 * 109.47335 * 272.02701 * 15 13 3 22 22 C 1.38268 * 119.94124 * 286.95967 * 21 15 13 23 23 C 1.38143 * 120.04967 * 179.72271 * 22 21 15 24 24 C 1.38737 * 119.94596 * 0.55101 * 23 22 21 25 25 O 1.35898 * 120.05415 * 179.74925 * 24 23 22 26 26 C 1.42894 * 117.00387 * 359.97124 * 25 24 23 27 27 C 1.38728 * 119.88686 * 359.72101 * 24 23 22 28 28 C 1.38145 * 119.94479 * 359.97438 * 27 24 23 29 29 H 1.08994 * 109.46931 * 186.93912 * 1 2 3 30 30 H 1.09008 * 109.46772 * 306.93681 * 1 2 3 31 31 H 1.08995 * 109.46924 * 66.93663 * 1 2 3 32 32 H 1.09005 * 109.47219 * 239.99995 * 2 1 3 33 33 H 1.09003 * 109.47590 * 120.00181 * 2 1 3 34 34 H 1.09001 * 109.47259 * 29.99537 * 4 3 2 35 35 H 1.09006 * 109.47438 * 149.99853 * 4 3 2 36 36 H 0.96991 * 120.00203 * 180.02562 * 8 7 5 37 37 H 1.00901 * 110.99947 * 151.78454 * 17 15 13 38 38 H 1.09003 * 109.47186 * 34.71494 * 18 17 15 39 39 H 1.09005 * 109.46825 * 55.40114 * 19 18 17 40 40 H 1.08999 * 109.47598 * 175.39909 * 19 18 17 41 41 H 1.08998 * 109.47219 * 295.40411 * 19 18 17 42 42 H 1.08999 * 109.47377 * 180.02562 * 20 18 17 43 43 H 1.09001 * 109.47104 * 300.00197 * 20 18 17 44 44 H 1.09003 * 109.46745 * 60.00031 * 20 18 17 45 45 H 1.07997 * 119.96971 * 359.97438 * 22 21 15 46 46 H 1.08004 * 120.02889 * 180.26564 * 23 22 21 47 47 H 1.09008 * 109.47027 * 60.00116 * 26 25 24 48 48 H 1.09000 * 109.47255 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.47079 * 300.00684 * 26 25 24 50 50 H 1.08004 * 120.02671 * 179.97438 * 27 24 23 51 51 H 1.08005 * 119.96866 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1251 2.1204 -1.2603 5 6 3.4923 1.9033 -1.8557 6 1 4.2099 1.2771 -1.3466 7 6 3.8269 2.5035 -3.0512 8 7 2.9529 3.2658 -3.6715 9 14 5.5214 2.2339 -3.7896 10 1 6.3116 1.3426 -2.9029 11 1 5.3838 1.6059 -5.1282 12 1 6.2159 3.5395 -3.9245 13 6 2.3696 1.9718 1.1595 14 8 2.6744 3.1456 1.1741 15 6 2.3834 1.1736 2.4377 16 1 2.6499 0.1399 2.2177 17 7 3.3701 1.7473 3.3626 18 6 4.7168 1.2329 3.0811 19 6 4.9166 -0.0983 3.8083 20 6 5.7599 2.2411 3.5673 21 6 1.0167 1.2162 3.0714 22 6 0.5752 2.3752 3.6826 23 6 -0.6794 2.4185 4.2591 24 6 -1.4920 1.2944 4.2345 25 8 -2.7246 1.3330 4.8055 26 6 -3.1194 2.5640 5.4142 27 6 -1.0444 0.1310 3.6255 28 6 0.2085 0.0948 3.0449 29 1 -0.3633 -1.0201 0.1242 30 1 -0.3633 0.6176 0.8215 31 1 -0.3633 0.4026 -0.9455 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.3652 1.7643 -1.9559 35 1 1.9755 3.1835 -1.0718 36 1 3.1881 3.6877 -4.5126 37 1 3.1099 1.5740 4.3219 38 1 4.8309 1.0812 2.0077 39 1 4.1245 -0.7907 3.5229 40 1 5.8838 -0.5202 3.5349 41 1 4.8838 0.0674 4.8851 42 1 6.7593 1.8596 3.3580 43 1 5.6176 3.1895 3.0492 44 1 5.6459 2.3928 4.6407 45 1 1.2102 3.2485 3.7057 46 1 -1.0256 3.3254 4.7327 47 1 -3.1186 3.3563 4.6655 48 1 -4.1211 2.4585 5.8309 49 1 -2.4195 2.8163 6.2109 50 1 -1.6750 -0.7456 3.6054 51 1 0.5572 -0.8106 2.5703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896859204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:37 Heat of formation + Delta-G solvation = -42.644391 kcal Electronic energy + Delta-G solvation = -30502.353993 eV Core-core repulsion = 26595.310064 eV Total energy + Delta-G solvation = -3907.043928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47578 -39.35507 -37.45303 -36.65371 -35.11408 -32.91191 -32.32174 -31.13784 -29.96693 -29.32380 -27.67204 -27.24171 -27.03594 -25.10747 -22.96340 -22.75378 -22.55052 -21.20739 -20.61554 -18.28064 -18.04933 -16.85407 -16.43686 -16.27186 -15.97237 -15.83663 -15.52160 -14.86111 -14.69320 -14.24109 -14.09743 -13.83253 -13.73322 -13.50756 -13.35729 -13.18481 -12.97456 -12.75276 -12.55475 -12.28657 -12.16882 -12.07023 -11.96556 -11.75816 -11.63369 -11.21877 -11.18730 -11.10731 -10.96934 -10.85825 -10.79641 -10.66688 -10.61975 -10.46798 -10.08715 -9.56827 -9.07799 -8.96562 -8.40216 -8.18489 -7.98462 -7.52655 -6.00600 -4.05173 1.29486 1.38168 3.13074 3.31026 3.38335 3.41389 3.49765 3.73281 3.85370 4.40585 4.50956 4.73260 4.81283 4.88928 4.94724 4.96763 5.02524 5.13221 5.18094 5.25446 5.28960 5.34025 5.37609 5.41496 5.45254 5.50216 5.66053 5.71236 5.73042 5.84865 5.89867 5.95938 5.98286 6.05551 6.10334 6.19163 6.24232 6.32984 6.35365 6.51142 6.60550 6.61305 6.68916 7.03863 7.22121 7.28989 7.51892 7.55074 7.64992 7.97249 8.28843 8.55004 8.95926 9.25207 9.60140 11.07314 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.003847 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.302020 B = 7277.541416 C = 8601.189032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.517 3.483 14 O -0.518 6.518 15 C 0.114 3.886 16 H 0.067 0.933 17 N -0.656 5.656 18 C 0.078 3.922 19 C -0.181 4.181 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.045 4.045 23 C -0.211 4.211 24 C 0.127 3.873 25 O -0.320 6.320 26 C 0.027 3.973 27 C -0.156 4.156 28 C -0.065 4.065 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.342 0.658 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.056 0.944 48 H 0.097 0.903 49 H 0.055 0.945 50 H 0.130 0.870 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 -7.977 18.857 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.302 3.698 14 O -0.392 6.392 15 C 0.001 3.999 16 H 0.084 0.916 17 N -0.288 5.288 18 C -0.032 4.032 19 C -0.240 4.240 20 C -0.193 4.193 21 C -0.123 4.123 22 C -0.064 4.064 23 C -0.229 4.229 24 C 0.082 3.918 25 O -0.233 6.233 26 C -0.068 4.068 27 C -0.174 4.174 28 C -0.083 4.083 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.075 0.925 48 H 0.116 0.884 49 H 0.073 0.927 50 H 0.148 0.852 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.919 -6.780 18.321 20.724 hybrid contribution 0.837 -0.850 -0.236 1.216 sum -6.082 -7.630 18.085 20.550 Atomic orbital electron populations 1.22317 0.96653 1.01197 1.02875 1.21448 0.93810 0.84596 1.02029 1.48212 1.63370 1.13221 1.08359 1.19216 0.96654 0.92903 0.78348 1.21475 0.99193 1.29865 1.05712 0.92569 1.24932 0.97269 0.94996 0.96905 1.69943 1.34590 1.31765 1.17020 0.86477 0.84305 0.78024 0.78814 1.19846 1.21021 1.20901 1.19967 0.78191 0.87829 0.83840 1.90639 1.47147 1.15834 1.85619 1.20422 0.89479 0.97111 0.92851 0.91564 1.60208 1.00562 1.61870 1.06166 1.21608 0.88834 0.92285 1.00450 1.22526 1.02135 0.98543 1.00755 1.21701 0.96845 0.99968 1.00756 1.19477 0.95889 0.94671 1.02214 1.20957 0.94431 0.97784 0.93212 1.21243 0.96289 0.98195 1.07194 1.19064 0.84367 0.94513 0.93901 1.86043 1.30736 1.36455 1.70110 1.23042 1.00966 0.85488 0.97272 1.20288 0.97126 0.96983 1.03021 1.20852 0.92894 0.97833 0.96739 0.92439 0.92231 0.92179 0.90455 0.92008 0.95212 0.93911 0.92840 0.83844 0.90138 0.92962 0.92023 0.92544 0.92795 0.91390 0.93123 0.84425 0.85515 0.92526 0.88417 0.92681 0.85248 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.17 37.16 0.34 -2.15 16 2 C 0.11 1.74 5.80 -4.04 -0.02 1.72 16 3 N -0.60 -12.84 2.46 -175.06 -0.43 -13.27 16 4 C 0.25 6.59 5.23 -5.20 -0.03 6.56 16 5 C -0.52 -14.92 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.52 10.93 6.36 -10.99 -0.07 10.86 16 14 O -0.52 -13.27 16.21 5.55 0.09 -13.18 16 15 C 0.11 1.78 1.69 -70.01 -0.12 1.66 16 16 H 0.07 0.94 4.84 -51.93 -0.25 0.69 16 17 N -0.66 -9.58 5.27 -102.18 -0.54 -10.12 16 18 C 0.08 1.09 3.00 -67.72 -0.20 0.88 16 19 C -0.18 -1.94 9.16 37.16 0.34 -1.60 16 20 C -0.13 -1.78 9.52 37.16 0.35 -1.43 16 21 C -0.12 -1.68 4.33 -104.60 -0.45 -2.13 16 22 C -0.05 -0.64 9.10 -39.61 -0.36 -1.00 16 23 C -0.21 -2.58 9.04 -39.43 -0.36 -2.94 16 24 C 0.13 1.55 6.69 -39.22 -0.26 1.28 16 25 O -0.32 -3.60 10.50 -19.42 -0.20 -3.81 16 26 C 0.03 0.21 9.81 101.05 0.99 1.20 16 27 C -0.16 -1.81 9.99 -39.43 -0.39 -2.20 16 28 C -0.06 -0.77 6.62 -39.61 -0.26 -1.03 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.90 5.89 -51.92 -0.31 0.59 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 33 H 0.06 0.85 4.57 -51.93 -0.24 0.61 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.30 7.35 -51.93 -0.38 0.91 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.34 4.23 7.94 -39.29 -0.31 3.92 16 38 H 0.08 1.37 7.60 -51.93 -0.39 0.98 16 39 H 0.05 0.54 7.39 -51.93 -0.38 0.16 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.14 2.09 7.93 -52.49 -0.42 1.67 16 46 H 0.13 1.30 6.30 -52.48 -0.33 0.97 16 47 H 0.06 0.42 7.66 -51.92 -0.40 0.02 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 50 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 51 H 0.13 1.29 6.84 -52.48 -0.36 0.93 16 LS Contribution 406.41 15.07 6.12 6.12 Total: -1.00 -33.90 406.41 -8.53 -42.43 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.36 Total: 4.86 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.92 Total: -3.91 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.23 Total: -49.50 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.11 Total: -16.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.90 -8.53 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.217 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds