Wall clock time and date at job start Tue Mar 31 2020 18:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47459 * 2 1 4 4 C 1.46496 * 120.00056 * 276.60263 * 3 2 1 5 5 C 1.50699 * 109.47024 * 269.99766 * 4 3 2 6 6 H 1.07996 * 120.00489 * 0.02562 * 5 4 3 7 7 C 1.37888 * 119.99972 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00047 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99731 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47338 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46951 * 120.00353 * 9 7 5 12 12 H 1.48500 * 109.46819 * 239.99705 * 9 7 5 13 13 C 1.34780 * 120.00020 * 96.60270 * 3 2 1 14 14 O 1.21283 * 119.99692 * 185.73793 * 13 3 2 15 15 C 1.50696 * 119.99913 * 5.72916 * 13 3 2 16 16 H 1.08995 * 109.47281 * 32.02929 * 15 13 3 17 17 N 1.46903 * 109.47169 * 152.02669 * 15 13 3 18 18 C 1.46889 * 110.99984 * 275.74412 * 17 15 13 19 19 C 1.53000 * 109.47424 * 274.71190 * 18 17 15 20 20 C 1.53004 * 109.47322 * 154.71193 * 18 17 15 21 21 C 1.50708 * 109.47335 * 272.02701 * 15 13 3 22 22 C 1.38268 * 119.94124 * 286.95967 * 21 15 13 23 23 C 1.38143 * 120.04967 * 179.72271 * 22 21 15 24 24 C 1.38737 * 119.94596 * 0.55101 * 23 22 21 25 25 O 1.35898 * 120.05415 * 179.74925 * 24 23 22 26 26 C 1.42894 * 117.00387 * 359.97124 * 25 24 23 27 27 C 1.38728 * 119.88686 * 359.72101 * 24 23 22 28 28 C 1.38145 * 119.94479 * 359.97438 * 27 24 23 29 29 H 1.08994 * 109.46931 * 186.93912 * 1 2 3 30 30 H 1.09008 * 109.46772 * 306.93681 * 1 2 3 31 31 H 1.08995 * 109.46924 * 66.93663 * 1 2 3 32 32 H 1.09005 * 109.47219 * 239.99995 * 2 1 3 33 33 H 1.09003 * 109.47590 * 120.00181 * 2 1 3 34 34 H 1.09001 * 109.47259 * 29.99537 * 4 3 2 35 35 H 1.09006 * 109.47438 * 149.99853 * 4 3 2 36 36 H 0.96991 * 120.00203 * 180.02562 * 8 7 5 37 37 H 1.00901 * 110.99947 * 151.78454 * 17 15 13 38 38 H 1.09003 * 109.47186 * 34.71494 * 18 17 15 39 39 H 1.09005 * 109.46825 * 55.40114 * 19 18 17 40 40 H 1.08999 * 109.47598 * 175.39909 * 19 18 17 41 41 H 1.08998 * 109.47219 * 295.40411 * 19 18 17 42 42 H 1.08999 * 109.47377 * 180.02562 * 20 18 17 43 43 H 1.09001 * 109.47104 * 300.00197 * 20 18 17 44 44 H 1.09003 * 109.46745 * 60.00031 * 20 18 17 45 45 H 1.07997 * 119.96971 * 359.97438 * 22 21 15 46 46 H 1.08004 * 120.02889 * 180.26564 * 23 22 21 47 47 H 1.09008 * 109.47027 * 60.00116 * 26 25 24 48 48 H 1.09000 * 109.47255 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.47079 * 300.00684 * 26 25 24 50 50 H 1.08004 * 120.02671 * 179.97438 * 27 24 23 51 51 H 1.08005 * 119.96866 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1251 2.1204 -1.2603 5 6 3.4923 1.9033 -1.8557 6 1 4.2099 1.2771 -1.3466 7 6 3.8269 2.5035 -3.0512 8 7 2.9529 3.2658 -3.6715 9 14 5.5214 2.2339 -3.7896 10 1 6.3116 1.3426 -2.9029 11 1 5.3838 1.6059 -5.1282 12 1 6.2159 3.5395 -3.9245 13 6 2.3696 1.9718 1.1595 14 8 2.6744 3.1456 1.1741 15 6 2.3834 1.1736 2.4377 16 1 2.6499 0.1399 2.2177 17 7 3.3701 1.7473 3.3626 18 6 4.7168 1.2329 3.0811 19 6 4.9166 -0.0983 3.8083 20 6 5.7599 2.2411 3.5673 21 6 1.0167 1.2162 3.0714 22 6 0.5752 2.3752 3.6826 23 6 -0.6794 2.4185 4.2591 24 6 -1.4920 1.2944 4.2345 25 8 -2.7246 1.3330 4.8055 26 6 -3.1194 2.5640 5.4142 27 6 -1.0444 0.1310 3.6255 28 6 0.2085 0.0948 3.0449 29 1 -0.3633 -1.0201 0.1242 30 1 -0.3633 0.6176 0.8215 31 1 -0.3633 0.4026 -0.9455 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.3652 1.7643 -1.9559 35 1 1.9755 3.1835 -1.0718 36 1 3.1881 3.6877 -4.5126 37 1 3.1099 1.5740 4.3219 38 1 4.8309 1.0812 2.0077 39 1 4.1245 -0.7907 3.5229 40 1 5.8838 -0.5202 3.5349 41 1 4.8838 0.0674 4.8851 42 1 6.7593 1.8596 3.3580 43 1 5.6176 3.1895 3.0492 44 1 5.6459 2.3928 4.6407 45 1 1.2102 3.2485 3.7057 46 1 -1.0256 3.3254 4.7327 47 1 -3.1186 3.3563 4.6655 48 1 -4.1211 2.4585 5.8309 49 1 -2.4195 2.8163 6.2109 50 1 -1.6750 -0.7456 3.6054 51 1 0.5572 -0.8106 2.5703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896859204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:36 Heat of formation + Delta-G solvation = -64.936323 kcal Electronic energy + Delta-G solvation = -30503.320643 eV Core-core repulsion = 26595.310064 eV Total energy + Delta-G solvation = -3908.010579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59988 -40.58466 -38.65634 -37.74522 -36.81388 -34.92734 -33.56387 -32.18157 -31.44140 -30.30571 -29.40823 -28.14426 -27.98538 -26.62451 -24.68362 -24.09006 -23.57534 -22.45485 -21.67850 -19.65662 -19.12266 -18.61172 -18.17883 -17.43620 -17.30423 -16.90273 -16.62414 -16.37155 -15.90006 -15.65144 -15.43751 -15.04435 -14.86996 -14.69392 -14.47355 -14.34355 -14.23905 -14.10210 -13.80423 -13.58080 -13.50947 -13.24675 -13.08646 -13.02978 -12.95551 -12.71306 -12.68972 -12.48829 -12.33875 -12.21239 -12.12388 -11.88480 -11.81022 -11.79629 -11.69464 -11.66528 -10.66353 -10.65217 -9.91361 -9.40760 -9.26556 -9.07262 -8.22002 -6.37212 0.33209 0.41070 1.34644 1.37395 1.49059 1.90941 2.28099 2.38241 2.42144 2.74086 3.06872 3.22183 3.71835 3.74893 3.89370 3.91854 4.01091 4.03948 4.20992 4.28313 4.33310 4.39533 4.40392 4.43536 4.45270 4.56959 4.60313 4.74048 4.75145 4.77771 4.87754 4.91715 4.93815 5.00409 5.04637 5.07111 5.11128 5.21758 5.25390 5.25689 5.38234 5.40845 5.42031 5.59050 5.60522 5.75638 5.88000 6.00226 6.07974 6.43279 6.52144 6.71832 6.88158 7.29534 7.59803 8.85149 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.003847 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.302020 B = 7277.541416 C = 8601.189032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.266 3.734 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.508 3.492 14 O -0.577 6.577 15 C 0.136 3.864 16 H 0.086 0.914 17 N -0.670 5.670 18 C 0.076 3.924 19 C -0.169 4.169 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.061 4.061 23 C -0.214 4.214 24 C 0.124 3.876 25 O -0.329 6.329 26 C 0.018 3.982 27 C -0.155 4.155 28 C -0.056 4.056 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.018 0.982 35 H -0.009 1.009 36 H 0.266 0.734 37 H 0.357 0.643 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.115 0.885 46 H 0.141 0.859 47 H 0.055 0.945 48 H 0.122 0.878 49 H 0.065 0.935 50 H 0.153 0.847 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 -11.060 20.650 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.295 3.705 14 O -0.456 6.456 15 C 0.023 3.977 16 H 0.104 0.896 17 N -0.304 5.304 18 C -0.034 4.034 19 C -0.228 4.228 20 C -0.189 4.189 21 C -0.137 4.137 22 C -0.079 4.079 23 C -0.233 4.233 24 C 0.079 3.921 25 O -0.243 6.243 26 C -0.076 4.076 27 C -0.173 4.173 28 C -0.075 4.075 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.036 0.964 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.179 0.821 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.133 0.867 46 H 0.159 0.841 47 H 0.074 0.926 48 H 0.140 0.860 49 H 0.083 0.917 50 H 0.170 0.830 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.161 -9.911 20.148 23.568 hybrid contribution 0.796 0.191 -0.741 1.104 sum -6.365 -9.721 19.407 22.619 Atomic orbital electron populations 1.22249 0.94776 1.03635 1.01439 1.21782 0.95324 0.81764 1.03468 1.48242 1.63573 1.14972 1.06871 1.18618 0.95738 0.90710 0.80515 1.21716 0.99846 1.30047 1.06132 0.92907 1.25877 1.01539 0.94456 0.97332 1.70069 1.36783 1.32505 1.17525 0.85371 0.78981 0.78015 0.78471 1.18947 1.19326 1.20844 1.21087 0.76359 0.87656 0.85358 1.90598 1.49599 1.18692 1.86725 1.20134 0.91090 0.96371 0.90125 0.89619 1.60034 1.00765 1.62737 1.06893 1.21593 0.88613 0.94478 0.98682 1.22403 1.02841 0.96219 1.01334 1.21671 0.97524 0.98136 1.01556 1.19385 0.95371 0.95675 1.03262 1.20857 0.95136 0.97376 0.94580 1.21353 0.95641 0.99198 1.07069 1.19258 0.84685 0.94564 0.93606 1.86038 1.30031 1.38174 1.70049 1.23322 1.02537 0.84325 0.97431 1.20593 0.97118 0.97514 1.02068 1.21052 0.92502 0.97792 0.96122 0.88041 0.92684 0.94498 0.91092 0.88399 0.96418 0.99049 0.92468 0.82087 0.93953 0.92201 0.91237 0.90674 0.91385 0.94978 0.91037 0.86741 0.84146 0.92582 0.86003 0.91666 0.82959 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 9.17 71.98 0.66 -3.78 16 2 C 0.10 3.17 5.80 86.38 0.50 3.67 16 3 N -0.60 -26.88 2.46 -826.15 -2.03 -28.91 16 4 C 0.27 15.00 5.23 85.63 0.45 15.45 16 5 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 9 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 C 0.51 22.40 6.36 87.66 0.56 22.96 16 14 O -0.58 -31.81 16.21 -3.04 -0.05 -31.86 16 15 C 0.14 4.17 1.69 43.42 0.07 4.24 16 16 H 0.09 2.26 4.84 -2.39 -0.01 2.25 16 17 N -0.67 -19.61 5.27 -477.19 -2.52 -22.12 16 18 C 0.08 2.09 3.00 44.92 0.13 2.23 16 19 C -0.17 -3.19 9.16 71.98 0.66 -2.53 16 20 C -0.13 -3.46 9.52 71.98 0.69 -2.78 16 21 C -0.14 -3.61 4.33 -19.85 -0.09 -3.70 16 22 C -0.06 -1.71 9.10 22.25 0.20 -1.51 16 23 C -0.21 -5.08 9.04 22.37 0.20 -4.88 16 24 C 0.12 2.77 6.69 22.51 0.15 2.92 16 25 O -0.33 -6.62 10.50 -92.40 -0.97 -7.59 16 26 C 0.02 0.24 9.81 113.37 1.11 1.35 16 27 C -0.15 -3.09 9.99 22.36 0.22 -2.87 16 28 C -0.06 -1.16 6.62 22.25 0.15 -1.02 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.56 5.89 -2.38 -0.01 1.55 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.07 2.37 8.12 -2.38 -0.02 2.35 16 33 H 0.10 2.40 4.57 -2.39 -0.01 2.39 16 34 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 35 H -0.01 -0.57 7.35 -2.38 -0.02 -0.59 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.36 8.49 7.94 -89.69 -0.71 7.78 16 38 H 0.04 1.48 7.60 -2.39 -0.02 1.46 16 39 H 0.06 1.05 7.39 -2.38 -0.02 1.03 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.11 3.71 7.93 -2.91 -0.02 3.69 16 46 H 0.14 2.79 6.30 -2.91 -0.02 2.77 16 47 H 0.06 0.74 7.66 -2.38 -0.02 0.73 16 48 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 50 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 51 H 0.15 2.34 6.84 -2.91 -0.02 2.32 16 Total: -1.00 -79.75 406.41 3.33 -76.42 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.21 Total: 24.69 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 6.37 Total: -1.07 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.26 Total: -108.44 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.02 Total: -39.45 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.75 3.33 -76.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.483 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds