Wall clock time and date at job start Tue Mar 31 2020 18:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46773 * 2 1 4 4 C 1.46493 * 120.00247 * 84.66231 * 3 2 1 5 5 C 1.50710 * 109.47125 * 269.99940 * 4 3 2 6 6 H 1.07999 * 119.99717 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00018 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99468 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00041 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47334 * 90.00360 * 9 7 5 11 11 H 1.48499 * 109.47211 * 210.00361 * 9 7 5 12 12 H 1.48507 * 109.47390 * 329.99858 * 9 7 5 13 13 C 1.34784 * 119.99653 * 264.65923 * 3 2 1 14 14 O 1.21284 * 119.99593 * 175.51475 * 13 3 2 15 15 C 1.50695 * 120.00126 * 355.51703 * 13 3 2 16 16 H 1.09000 * 109.47268 * 328.87879 * 15 13 3 17 17 N 1.46905 * 109.46982 * 208.88100 * 15 13 3 18 18 C 1.46902 * 110.99844 * 83.98826 * 17 15 13 19 19 C 1.53001 * 109.46974 * 85.95801 * 18 17 15 20 20 C 1.52993 * 109.47156 * 205.95779 * 18 17 15 21 21 C 1.50700 * 109.47192 * 88.88213 * 15 13 3 22 22 C 1.38267 * 119.94380 * 251.84937 * 21 15 13 23 23 C 1.38144 * 120.05227 * 179.72932 * 22 21 15 24 24 C 1.38732 * 119.94355 * 0.54197 * 23 22 21 25 25 O 1.35902 * 120.05210 * 179.75103 * 24 23 22 26 26 C 1.42899 * 117.00023 * 359.97438 * 25 24 23 27 27 C 1.38725 * 119.89162 * 359.73198 * 24 23 22 28 28 C 1.38148 * 119.94339 * 359.97438 * 27 24 23 29 29 H 1.08989 * 109.47328 * 298.82566 * 1 2 3 30 30 H 1.08998 * 109.47104 * 58.83626 * 1 2 3 31 31 H 1.09008 * 109.46509 * 178.82558 * 1 2 3 32 32 H 1.08996 * 109.47402 * 240.00267 * 2 1 3 33 33 H 1.09002 * 109.47381 * 119.99738 * 2 1 3 34 34 H 1.08998 * 109.47246 * 29.99578 * 4 3 2 35 35 H 1.08998 * 109.47548 * 150.00370 * 4 3 2 36 36 H 0.97001 * 119.99585 * 179.97438 * 8 7 5 37 37 H 1.00903 * 110.99943 * 320.03782 * 17 15 13 38 38 H 1.09005 * 109.47107 * 325.96390 * 18 17 15 39 39 H 1.08999 * 109.46990 * 184.66824 * 19 18 17 40 40 H 1.08998 * 109.47717 * 304.67259 * 19 18 17 41 41 H 1.09004 * 109.47235 * 64.66697 * 19 18 17 42 42 H 1.09001 * 109.47354 * 60.00450 * 20 18 17 43 43 H 1.08999 * 109.47007 * 180.02562 * 20 18 17 44 44 H 1.09005 * 109.47611 * 300.00302 * 20 18 17 45 45 H 1.07994 * 119.97248 * 0.02562 * 22 21 15 46 46 H 1.08002 * 120.02360 * 180.27675 * 23 22 21 47 47 H 1.09002 * 109.47437 * 299.99495 * 26 25 24 48 48 H 1.08995 * 109.47228 * 60.00438 * 26 25 24 49 49 H 1.09009 * 109.47054 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.02720 * 179.97438 * 27 24 23 51 51 H 1.07996 * 119.97060 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1511 2.1112 1.2631 5 6 0.8629 2.8331 1.5641 6 1 0.0285 2.7554 0.8828 7 6 0.7495 3.5926 2.7092 8 7 -0.3749 4.2220 2.9720 9 14 2.1923 3.7263 3.8880 10 1 3.0405 4.8829 3.5030 11 1 1.6859 3.9223 5.2701 12 1 2.9977 2.4801 3.8280 13 6 2.3453 1.9804 -1.1622 14 8 2.6716 3.1485 -1.1715 15 6 2.3054 1.1989 -2.4501 16 1 2.5431 0.1544 -2.2488 17 7 3.2896 1.7528 -3.3896 18 6 4.6263 1.1967 -3.1404 19 6 4.7782 -0.1243 -3.8973 20 6 5.6885 2.1862 -3.6232 21 6 0.9273 1.2934 -3.0526 22 6 0.0913 0.1922 -3.0395 23 6 -1.1744 0.2780 -3.5861 24 6 -1.6024 1.4670 -4.1586 25 8 -2.8453 1.5523 -4.7016 26 6 -3.6584 0.3784 -4.6485 27 6 -0.7596 2.5688 -4.1756 28 6 0.5031 2.4797 -3.6222 29 1 -0.3633 0.4954 0.9002 30 1 -0.3633 0.5318 -0.8793 31 1 -0.3633 -1.0276 -0.0211 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3705 1.4089 2.0673 35 1 2.9623 2.8347 1.1812 36 1 -0.4549 4.7561 3.7778 37 1 3.3035 2.7608 -3.3462 38 1 4.7529 1.0200 -2.0722 39 1 5.7372 -0.5781 -3.6472 40 1 3.9715 -0.8003 -3.6140 41 1 4.7342 0.0644 -4.9700 42 1 5.5803 3.1273 -3.0839 43 1 6.6803 1.7733 -3.4387 44 1 5.5619 2.3629 -4.6913 45 1 0.4264 -0.7343 -2.5972 46 1 -1.8287 -0.5812 -3.5716 47 1 -3.1613 -0.4324 -5.1811 48 1 -3.8122 0.0897 -3.6088 49 1 -4.6223 0.5827 -5.1149 50 1 -1.0903 3.4954 -4.6211 51 1 1.1594 3.3373 -3.6349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896859221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:40 Heat of formation + Delta-G solvation = -40.977377 kcal Electronic energy + Delta-G solvation = -30723.394903 eV Core-core repulsion = 26816.423262 eV Total energy + Delta-G solvation = -3906.971641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44542 -39.47921 -37.38503 -36.65864 -35.39687 -32.86153 -32.26510 -31.09761 -30.08369 -29.25518 -28.17296 -27.44221 -27.18846 -25.03135 -22.89116 -22.64025 -22.34636 -21.00797 -20.47849 -18.44600 -18.10359 -17.13121 -16.78414 -16.18773 -15.89133 -15.73129 -15.66371 -15.29991 -14.58153 -14.50797 -14.11142 -13.83413 -13.61699 -13.46651 -13.40289 -13.03988 -12.80601 -12.51920 -12.48143 -12.40507 -12.30654 -12.12645 -12.01132 -11.83184 -11.68113 -11.41753 -11.40139 -11.23512 -10.97010 -10.85203 -10.78209 -10.65608 -10.58779 -10.37895 -10.14136 -9.53625 -9.36378 -8.76363 -8.57415 -8.39137 -7.88632 -7.74968 -6.06743 -4.04640 1.52630 1.54060 3.20881 3.27911 3.32259 3.33731 3.35659 3.76474 3.86975 4.28394 4.39850 4.79502 4.91241 4.95475 4.98573 5.01073 5.05103 5.07957 5.16080 5.19124 5.26917 5.35801 5.37546 5.42750 5.53536 5.61838 5.63050 5.72894 5.79056 5.81723 5.82822 5.87507 5.89489 6.11789 6.14564 6.16223 6.24475 6.37966 6.40836 6.46390 6.65403 6.73921 6.88130 6.88942 6.91764 7.04815 7.30925 7.45850 7.46664 7.61936 8.20586 8.48244 8.87125 8.99406 9.53432 11.06497 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.004955 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.171856 B = 5648.998843 C = 7838.848502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 N -0.586 5.586 4 C 0.216 3.784 5 C -0.521 4.521 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.486 3.514 14 O -0.538 6.538 15 C 0.112 3.888 16 H 0.100 0.900 17 N -0.660 5.660 18 C 0.075 3.925 19 C -0.137 4.137 20 C -0.153 4.153 21 C -0.095 4.095 22 C -0.064 4.064 23 C -0.210 4.210 24 C 0.125 3.875 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.151 4.151 28 C -0.046 4.046 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.355 0.645 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.129 0.871 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -12.892 -15.241 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.014 4.014 3 N -0.317 5.317 4 C 0.095 3.905 5 C -0.560 4.560 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.270 3.730 14 O -0.415 6.415 15 C -0.002 4.002 16 H 0.118 0.882 17 N -0.294 5.294 18 C -0.035 4.035 19 C -0.195 4.195 20 C -0.210 4.210 21 C -0.096 4.096 22 C -0.083 4.083 23 C -0.229 4.229 24 C 0.080 3.920 25 O -0.233 6.233 26 C -0.067 4.067 27 C -0.169 4.169 28 C -0.064 4.064 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.177 0.823 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.147 0.853 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.763 -12.428 -15.673 20.193 hybrid contribution 0.662 0.325 1.825 1.969 sum 3.425 -12.103 -13.848 18.708 Atomic orbital electron populations 1.22382 0.95530 1.00827 1.04764 1.21491 0.95397 0.83212 1.01340 1.47996 1.62620 1.13391 1.07701 1.19671 0.98500 0.92120 0.80228 1.21317 0.98320 1.28905 1.07428 0.90439 1.24855 0.95577 0.94951 0.97629 1.69898 1.25363 1.31765 1.26519 0.86899 0.83265 0.79135 0.80635 1.20040 1.21118 1.19226 1.21219 0.78080 0.88027 0.85635 1.90655 1.48955 1.15893 1.86018 1.20543 0.91285 0.99472 0.88896 0.88190 1.60926 1.05003 1.13502 1.49938 1.21530 0.88498 0.95432 0.98047 1.21798 1.00686 0.96058 1.00955 1.21942 0.98019 0.99103 1.01965 1.19159 0.94330 0.94404 1.01732 1.20685 0.92919 0.97776 0.96903 1.21056 0.98278 0.97514 1.06008 1.19004 0.84530 0.94334 0.94093 1.86057 1.24065 1.37527 1.75673 1.23016 0.94489 0.87204 1.01978 1.20372 0.93724 0.97632 1.05221 1.20757 0.94419 0.97290 0.93976 0.90230 0.91866 0.93025 0.91805 0.91057 0.95398 0.94935 0.92654 0.82271 0.93849 0.92834 0.92861 0.92055 0.92281 0.92118 0.91822 0.85902 0.85626 0.92834 0.92588 0.88542 0.85345 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.23 37.16 0.34 -2.50 16 2 C 0.11 1.71 6.02 -4.04 -0.02 1.68 16 3 N -0.59 -11.86 2.46 -175.06 -0.43 -12.29 16 4 C 0.22 5.23 4.24 -5.19 -0.02 5.21 16 5 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 6 H 0.08 2.44 7.76 -52.49 -0.41 2.03 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 9 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.49 9.66 6.32 -10.98 -0.07 9.59 16 14 O -0.54 -12.75 15.54 5.55 0.09 -12.66 16 15 C 0.11 1.69 1.71 -70.02 -0.12 1.57 16 16 H 0.10 1.33 4.78 -51.93 -0.25 1.08 16 17 N -0.66 -9.24 5.68 -102.18 -0.58 -9.82 16 18 C 0.07 0.92 3.03 -67.71 -0.20 0.71 16 19 C -0.14 -1.39 9.43 37.16 0.35 -1.04 16 20 C -0.15 -1.68 9.17 37.15 0.34 -1.34 16 21 C -0.09 -1.44 4.64 -104.60 -0.49 -1.93 16 22 C -0.06 -0.85 6.71 -39.61 -0.27 -1.12 16 23 C -0.21 -2.71 9.04 -39.43 -0.36 -3.06 16 24 C 0.13 1.80 6.69 -39.22 -0.26 1.54 16 25 O -0.32 -4.26 10.50 -19.43 -0.20 -4.47 16 26 C 0.03 0.25 9.81 101.05 0.99 1.25 16 27 C -0.15 -2.29 9.99 -39.43 -0.39 -2.69 16 28 C -0.05 -0.73 9.24 -39.60 -0.37 -1.10 16 29 H 0.08 1.58 7.17 -51.94 -0.37 1.20 16 30 H 0.06 1.07 5.19 -51.93 -0.27 0.81 16 31 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.06 0.80 5.02 -51.93 -0.26 0.53 16 33 H 0.07 1.04 7.97 -51.93 -0.41 0.62 16 34 H 0.03 0.65 7.00 -51.93 -0.36 0.29 16 35 H 0.03 0.85 6.91 -51.93 -0.36 0.49 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.36 5.49 6.68 -39.29 -0.26 5.22 16 38 H 0.04 0.60 7.59 -51.93 -0.39 0.21 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.54 7.44 -51.93 -0.39 0.15 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.12 1.35 7.09 -52.49 -0.37 0.97 16 46 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 47 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 48 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 49 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 50 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 51 H 0.13 2.09 7.49 -52.49 -0.39 1.69 16 LS Contribution 399.24 15.07 6.02 6.02 Total: -1.00 -33.92 399.24 -8.14 -42.06 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.18 Total: 7.50 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.96 Total: -6.36 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.24 Total: -49.06 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.12 Total: -17.13 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.92 -8.14 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.087 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds