Wall clock time and date at job start Tue Mar 31 2020 18:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46773 * 2 1 4 4 C 1.46493 * 120.00247 * 84.66231 * 3 2 1 5 5 C 1.50710 * 109.47125 * 269.99940 * 4 3 2 6 6 H 1.07999 * 119.99717 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00018 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99468 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00041 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47334 * 90.00360 * 9 7 5 11 11 H 1.48499 * 109.47211 * 210.00361 * 9 7 5 12 12 H 1.48507 * 109.47390 * 329.99858 * 9 7 5 13 13 C 1.34784 * 119.99653 * 264.65923 * 3 2 1 14 14 O 1.21284 * 119.99593 * 175.51475 * 13 3 2 15 15 C 1.50695 * 120.00126 * 355.51703 * 13 3 2 16 16 H 1.09000 * 109.47268 * 328.87879 * 15 13 3 17 17 N 1.46905 * 109.46982 * 208.88100 * 15 13 3 18 18 C 1.46902 * 110.99844 * 83.98826 * 17 15 13 19 19 C 1.53001 * 109.46974 * 85.95801 * 18 17 15 20 20 C 1.52993 * 109.47156 * 205.95779 * 18 17 15 21 21 C 1.50700 * 109.47192 * 88.88213 * 15 13 3 22 22 C 1.38267 * 119.94380 * 251.84937 * 21 15 13 23 23 C 1.38144 * 120.05227 * 179.72932 * 22 21 15 24 24 C 1.38732 * 119.94355 * 0.54197 * 23 22 21 25 25 O 1.35902 * 120.05210 * 179.75103 * 24 23 22 26 26 C 1.42899 * 117.00023 * 359.97438 * 25 24 23 27 27 C 1.38725 * 119.89162 * 359.73198 * 24 23 22 28 28 C 1.38148 * 119.94339 * 359.97438 * 27 24 23 29 29 H 1.08989 * 109.47328 * 298.82566 * 1 2 3 30 30 H 1.08998 * 109.47104 * 58.83626 * 1 2 3 31 31 H 1.09008 * 109.46509 * 178.82558 * 1 2 3 32 32 H 1.08996 * 109.47402 * 240.00267 * 2 1 3 33 33 H 1.09002 * 109.47381 * 119.99738 * 2 1 3 34 34 H 1.08998 * 109.47246 * 29.99578 * 4 3 2 35 35 H 1.08998 * 109.47548 * 150.00370 * 4 3 2 36 36 H 0.97001 * 119.99585 * 179.97438 * 8 7 5 37 37 H 1.00903 * 110.99943 * 320.03782 * 17 15 13 38 38 H 1.09005 * 109.47107 * 325.96390 * 18 17 15 39 39 H 1.08999 * 109.46990 * 184.66824 * 19 18 17 40 40 H 1.08998 * 109.47717 * 304.67259 * 19 18 17 41 41 H 1.09004 * 109.47235 * 64.66697 * 19 18 17 42 42 H 1.09001 * 109.47354 * 60.00450 * 20 18 17 43 43 H 1.08999 * 109.47007 * 180.02562 * 20 18 17 44 44 H 1.09005 * 109.47611 * 300.00302 * 20 18 17 45 45 H 1.07994 * 119.97248 * 0.02562 * 22 21 15 46 46 H 1.08002 * 120.02360 * 180.27675 * 23 22 21 47 47 H 1.09002 * 109.47437 * 299.99495 * 26 25 24 48 48 H 1.08995 * 109.47228 * 60.00438 * 26 25 24 49 49 H 1.09009 * 109.47054 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.02720 * 179.97438 * 27 24 23 51 51 H 1.07996 * 119.97060 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1511 2.1112 1.2631 5 6 0.8629 2.8331 1.5641 6 1 0.0285 2.7554 0.8828 7 6 0.7495 3.5926 2.7092 8 7 -0.3749 4.2220 2.9720 9 14 2.1923 3.7263 3.8880 10 1 3.0405 4.8829 3.5030 11 1 1.6859 3.9223 5.2701 12 1 2.9977 2.4801 3.8280 13 6 2.3453 1.9804 -1.1622 14 8 2.6716 3.1485 -1.1715 15 6 2.3054 1.1989 -2.4501 16 1 2.5431 0.1544 -2.2488 17 7 3.2896 1.7528 -3.3896 18 6 4.6263 1.1967 -3.1404 19 6 4.7782 -0.1243 -3.8973 20 6 5.6885 2.1862 -3.6232 21 6 0.9273 1.2934 -3.0526 22 6 0.0913 0.1922 -3.0395 23 6 -1.1744 0.2780 -3.5861 24 6 -1.6024 1.4670 -4.1586 25 8 -2.8453 1.5523 -4.7016 26 6 -3.6584 0.3784 -4.6485 27 6 -0.7596 2.5688 -4.1756 28 6 0.5031 2.4797 -3.6222 29 1 -0.3633 0.4954 0.9002 30 1 -0.3633 0.5318 -0.8793 31 1 -0.3633 -1.0276 -0.0211 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3705 1.4089 2.0673 35 1 2.9623 2.8347 1.1812 36 1 -0.4549 4.7561 3.7778 37 1 3.3035 2.7608 -3.3462 38 1 4.7529 1.0200 -2.0722 39 1 5.7372 -0.5781 -3.6472 40 1 3.9715 -0.8003 -3.6140 41 1 4.7342 0.0644 -4.9700 42 1 5.5803 3.1273 -3.0839 43 1 6.6803 1.7733 -3.4387 44 1 5.5619 2.3629 -4.6913 45 1 0.4264 -0.7343 -2.5972 46 1 -1.8287 -0.5812 -3.5716 47 1 -3.1613 -0.4324 -5.1811 48 1 -3.8122 0.0897 -3.6088 49 1 -4.6223 0.5827 -5.1149 50 1 -1.0903 3.4954 -4.6211 51 1 1.1594 3.3373 -3.6349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896859221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:39 Heat of formation + Delta-G solvation = -64.048788 kcal Electronic energy + Delta-G solvation = -30724.395354 eV Core-core repulsion = 26816.423262 eV Total energy + Delta-G solvation = -3907.972092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70326 -40.67979 -38.58567 -37.75966 -36.94039 -34.83308 -33.57563 -32.26455 -31.56188 -30.28505 -29.91140 -28.35667 -28.01959 -26.40399 -24.23023 -24.17931 -23.67042 -22.25245 -21.47599 -19.88670 -19.12289 -19.08804 -18.37110 -17.50001 -17.10973 -16.97183 -16.59532 -16.40332 -16.32924 -15.65249 -15.35153 -15.22218 -14.84707 -14.75239 -14.63690 -14.51199 -14.26901 -13.90532 -13.72783 -13.57298 -13.51185 -13.37478 -13.08139 -12.93954 -12.86616 -12.70799 -12.66675 -12.46674 -12.39690 -12.17689 -12.02218 -11.90791 -11.82012 -11.72515 -11.66365 -11.58384 -10.90559 -10.80890 -9.87257 -9.56638 -9.46101 -9.01049 -8.31931 -6.35292 0.39981 0.43339 1.29612 1.33667 1.41510 1.70067 2.27595 2.30160 2.41022 2.74533 3.01717 3.17176 3.66029 3.71003 3.86724 3.96916 4.01968 4.06189 4.18553 4.24974 4.36808 4.42929 4.44044 4.44236 4.44913 4.54807 4.64806 4.74488 4.74801 4.76305 4.83272 4.87191 4.93846 4.96420 5.00096 5.03216 5.05079 5.08781 5.24962 5.28400 5.36977 5.45780 5.46535 5.56080 5.62252 5.65148 5.80608 5.95520 6.23517 6.26564 6.48226 6.65506 6.68289 7.21708 7.36164 8.84984 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.004955 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.171856 B = 5648.998843 C = 7838.848502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.593 5.593 4 C 0.224 3.776 5 C -0.520 4.520 6 H 0.030 0.970 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.277 1.277 12 H -0.238 1.238 13 C 0.478 3.522 14 O -0.588 6.588 15 C 0.130 3.870 16 H 0.128 0.872 17 N -0.656 5.656 18 C 0.069 3.931 19 C -0.130 4.130 20 C -0.149 4.149 21 C -0.112 4.112 22 C -0.059 4.059 23 C -0.206 4.206 24 C 0.119 3.881 25 O -0.339 6.339 26 C 0.017 3.983 27 C -0.174 4.174 28 C -0.066 4.066 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.014 0.986 36 H 0.266 0.734 37 H 0.343 0.657 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.117 0.883 50 H 0.127 0.873 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 -16.860 -15.682 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.101 3.899 5 C -0.559 4.559 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.202 1.202 12 H -0.161 1.161 13 C 0.265 3.735 14 O -0.469 6.469 15 C 0.016 3.984 16 H 0.146 0.854 17 N -0.288 5.288 18 C -0.041 4.041 19 C -0.188 4.188 20 C -0.207 4.207 21 C -0.114 4.114 22 C -0.077 4.077 23 C -0.224 4.224 24 C 0.073 3.927 25 O -0.253 6.253 26 C -0.077 4.077 27 C -0.192 4.192 28 C -0.085 4.085 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.164 0.836 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.174 0.826 46 H 0.176 0.824 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.135 0.865 50 H 0.145 0.855 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.915 -16.464 -16.142 23.387 hybrid contribution 0.149 1.570 1.851 2.432 sum 4.065 -14.894 -14.291 21.037 Atomic orbital electron populations 1.22302 0.95980 1.02756 1.01739 1.21874 0.94964 0.80928 1.04296 1.48118 1.62712 1.15040 1.06451 1.19337 0.95289 0.92291 0.82977 1.21490 0.98743 1.29236 1.06396 0.95190 1.25822 0.98640 0.94526 0.99837 1.70061 1.27988 1.33158 1.27548 0.85773 0.79430 0.80054 0.78009 1.20551 1.20188 1.16077 1.22225 0.76549 0.87820 0.86942 1.90621 1.50971 1.18380 1.86899 1.20501 0.91866 0.99781 0.86220 0.85434 1.61057 1.05954 1.12760 1.49019 1.21709 0.87757 0.96947 0.97655 1.21754 1.01905 0.94507 1.00615 1.21921 0.98699 0.97981 1.02057 1.19278 0.94779 0.94893 1.02416 1.21036 0.92514 0.98172 0.95961 1.21425 0.98542 0.97831 1.04611 1.19156 0.84929 0.94546 0.94026 1.86038 1.23824 1.39960 1.75449 1.23359 0.94937 0.86467 1.02898 1.20479 0.94086 0.98529 1.06138 1.20749 0.94789 0.97568 0.95359 0.94964 0.93126 0.88536 0.87610 0.89256 0.93329 0.96827 0.92512 0.83611 0.95351 0.91050 0.92320 0.91857 0.94389 0.90253 0.91058 0.82569 0.82350 0.90900 0.92107 0.86485 0.85496 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 9.23 71.98 0.66 -4.48 16 2 C 0.10 2.87 6.02 86.38 0.52 3.39 16 3 N -0.59 -23.71 2.46 -826.14 -2.03 -25.75 16 4 C 0.22 10.89 4.24 85.64 0.36 11.25 16 5 C -0.52 -30.71 9.11 25.60 0.23 -30.47 16 6 H 0.03 2.00 7.76 -2.91 -0.02 1.98 16 7 C 0.01 0.55 5.47 84.66 0.46 1.01 16 8 N -0.95 -60.83 13.96 21.45 0.30 -60.54 16 9 Si 0.94 45.04 27.47 68.60 1.88 46.92 16 10 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 13 C 0.48 19.21 6.32 87.65 0.55 19.77 16 14 O -0.59 -29.26 15.54 -3.04 -0.05 -29.30 16 15 C 0.13 3.80 1.71 43.42 0.07 3.88 16 16 H 0.13 2.94 4.78 -2.39 -0.01 2.93 16 17 N -0.66 -18.16 5.68 -477.18 -2.71 -20.87 16 18 C 0.07 1.59 3.03 44.91 0.14 1.73 16 19 C -0.13 -2.23 9.43 71.98 0.68 -1.55 16 20 C -0.15 -3.16 9.17 71.98 0.66 -2.50 16 21 C -0.11 -3.34 4.64 -19.85 -0.09 -3.43 16 22 C -0.06 -1.39 6.71 22.25 0.15 -1.24 16 23 C -0.21 -4.78 9.04 22.37 0.20 -4.58 16 24 C 0.12 3.35 6.69 22.50 0.15 3.50 16 25 O -0.34 -8.74 10.50 -92.44 -0.97 -9.71 16 26 C 0.02 0.27 9.81 113.37 1.11 1.38 16 27 C -0.17 -5.52 9.99 22.37 0.22 -5.30 16 28 C -0.07 -2.21 9.24 22.25 0.21 -2.00 16 29 H 0.03 1.27 7.17 -2.39 -0.02 1.25 16 30 H 0.05 1.65 5.19 -2.39 -0.01 1.64 16 31 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.11 2.12 5.02 -2.39 -0.01 2.10 16 33 H 0.09 2.25 7.97 -2.39 -0.02 2.23 16 34 H 0.05 2.17 7.00 -2.39 -0.02 2.15 16 35 H 0.01 0.72 6.91 -2.39 -0.02 0.70 16 36 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 37 H 0.34 11.12 6.68 -89.69 -0.60 10.52 16 38 H 0.03 0.75 7.59 -2.38 -0.02 0.73 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.95 7.44 -2.39 -0.02 0.93 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 45 H 0.16 2.59 7.09 -2.91 -0.02 2.57 16 46 H 0.16 2.57 6.30 -2.91 -0.02 2.55 16 47 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 48 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 49 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 50 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 51 H 0.11 3.99 7.49 -2.91 -0.02 3.97 16 Total: -1.00 -80.23 399.24 3.00 -77.23 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.28 Total: 31.65 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 6.30 Total: -9.65 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.44 Total: -107.15 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.02 Total: -39.01 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -80.23 3.00 -77.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.185 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds