Wall clock time and date at job start Tue Mar 31 2020 19:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46875 * 2 1 4 4 C 1.37092 * 119.99932 * 263.94260 * 3 2 1 5 5 H 1.07998 * 120.00467 * 189.07524 * 4 3 2 6 6 C 1.38954 * 120.00059 * 9.07726 * 4 3 2 7 7 N 1.31415 * 120.00029 * 28.34223 * 6 4 3 8 8 Si 1.86806 * 120.00246 * 208.35279 * 6 4 3 9 9 H 1.48501 * 109.47176 * 94.98834 * 8 6 4 10 10 H 1.48497 * 109.46918 * 214.98933 * 8 6 4 11 11 H 1.48499 * 109.46656 * 334.99053 * 8 6 4 12 12 C 1.34776 * 120.00131 * 83.94375 * 3 2 1 13 13 O 1.21298 * 119.99786 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99919 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.46623 * 179.97438 * 14 12 3 16 16 C 1.50704 * 109.46623 * 180.02562 * 15 14 12 17 17 C 1.38258 * 119.94596 * 90.00032 * 16 15 14 18 18 C 1.38154 * 120.05546 * 179.97438 * 17 16 15 19 19 C 1.38730 * 119.94347 * 0.02562 * 18 17 16 20 20 O 1.35899 * 120.05665 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00005 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47150 * 180.02562 * 21 20 19 23 23 N 1.46902 * 109.47241 * 66.06778 * 22 21 20 24 24 C 1.46901 * 110.99963 * 75.80067 * 23 22 21 25 25 C 1.46895 * 110.99878 * 199.75388 * 23 22 21 26 26 C 1.38735 * 119.88679 * 0.27322 * 19 18 17 27 27 C 1.38142 * 119.94490 * 359.42467 * 26 19 18 28 28 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47531 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.46848 * 60.00657 * 1 2 3 31 31 H 1.08994 * 109.47531 * 239.99697 * 2 1 3 32 32 H 1.09008 * 109.46884 * 119.99325 * 2 1 3 33 33 H 0.96999 * 119.99987 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47342 * 60.00056 * 14 12 3 35 35 H 1.08997 * 109.46814 * 299.99479 * 14 12 3 36 36 H 1.08995 * 109.47087 * 60.00057 * 15 14 12 37 37 H 1.08997 * 109.47228 * 299.99383 * 15 14 12 38 38 H 1.08001 * 119.97234 * 359.97438 * 17 16 15 39 39 H 1.08000 * 120.02445 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.47189 * 299.99893 * 21 20 19 41 41 H 1.08996 * 109.47557 * 60.00199 * 21 20 19 42 42 H 1.08993 * 109.47213 * 186.07040 * 22 21 20 43 43 H 1.09001 * 109.46773 * 306.07010 * 22 21 20 44 44 H 1.08997 * 109.46990 * 59.99625 * 24 23 22 45 45 H 1.08999 * 109.47221 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.46755 * 300.00156 * 24 23 22 47 47 H 1.08993 * 109.47527 * 64.70459 * 25 23 22 48 48 H 1.09004 * 109.47310 * 184.70060 * 25 23 22 49 49 H 1.09004 * 109.47501 * 304.69839 * 25 23 22 50 50 H 1.08002 * 120.02222 * 179.72229 * 26 19 18 51 51 H 1.08000 * 119.97345 * 180.27170 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3649 1.9858 -1.1806 5 1 2.8604 2.9453 -1.1710 6 6 2.0786 1.3639 -2.3898 7 7 1.0519 0.5489 -2.4827 8 14 3.1535 1.6861 -3.8834 9 1 4.1869 0.6247 -3.9877 10 1 2.3135 1.6813 -5.1079 11 1 3.8144 3.0083 -3.7415 12 6 2.1268 2.0577 1.1607 13 8 2.5315 3.2012 1.1606 14 6 1.7464 1.3930 2.4586 15 6 1.9626 2.3712 3.6150 16 6 1.5828 1.7063 4.9130 17 6 2.5323 1.0051 5.6329 18 6 2.1867 0.3951 6.8234 19 6 0.8856 0.4862 7.2959 20 8 0.5430 -0.1134 8.4664 21 6 -0.8146 0.0215 8.8914 22 6 -1.0089 -0.7135 10.2192 23 7 -0.2282 -0.0441 11.2682 24 6 -0.8814 1.1996 11.6979 25 6 -0.0017 -0.9411 12.4092 26 6 -0.0668 1.1851 6.5685 27 6 0.2853 1.7986 5.3819 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8519 0.1151 -3.3269 34 1 2.3665 0.5095 2.6098 35 1 0.6975 1.0989 2.4223 36 1 1.3428 3.2549 3.4640 37 1 3.0116 2.6649 3.6511 38 1 3.5450 0.9341 5.2644 39 1 2.9287 -0.1529 7.3851 40 1 -1.0509 1.0774 9.0231 41 1 -1.4755 -0.4075 8.1382 42 1 -2.0647 -0.7028 10.4893 43 1 -0.6705 -1.7446 10.1166 44 1 -1.8724 0.9725 12.0908 45 1 -0.2824 1.6751 12.4745 46 1 -0.9738 1.8742 10.8467 47 1 0.6166 -1.7814 12.0937 48 1 0.5054 -0.3957 13.2052 49 1 -0.9590 -1.3118 12.7757 50 1 -1.0815 1.2536 6.9321 51 1 -0.4547 2.3465 4.8174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930619451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:11 Heat of formation + Delta-G solvation = -36.224099 kcal Electronic energy + Delta-G solvation = -28169.450662 eV Core-core repulsion = 24262.685139 eV Total energy + Delta-G solvation = -3906.765523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.19182 -38.72448 -38.15171 -37.08143 -35.08472 -33.07021 -31.75227 -31.10959 -30.45083 -29.37897 -28.45654 -28.00949 -25.33964 -24.83536 -23.42175 -22.72514 -22.09907 -21.37176 -20.56997 -18.58567 -18.27383 -16.78971 -16.65200 -16.24028 -16.13993 -15.53677 -15.13175 -14.95209 -14.91544 -14.56649 -14.33402 -14.15042 -14.01603 -13.37431 -13.26157 -13.04441 -12.86017 -12.76326 -12.71094 -12.55408 -12.38588 -12.12654 -12.03857 -11.79017 -11.59464 -11.44634 -11.28183 -11.06055 -10.98020 -10.83851 -10.70165 -10.64055 -10.42012 -10.26079 -10.06063 -9.74868 -8.91108 -8.86084 -8.78097 -8.32560 -7.89778 -7.70974 -6.33656 -3.71509 1.43187 1.53910 3.09952 3.17718 3.29202 3.34975 3.47601 3.84901 3.96064 4.17910 4.49307 4.60105 4.75065 4.86617 4.88940 4.90494 4.91666 4.96823 5.04618 5.09313 5.11805 5.20902 5.24958 5.33393 5.46341 5.47869 5.50376 5.51934 5.68226 5.77580 5.81594 5.93587 6.05730 6.10791 6.32638 6.37374 6.39839 6.48306 6.53529 6.56544 6.61248 6.66781 6.68501 6.80951 6.89998 6.91687 7.24965 7.45810 7.50125 7.80486 8.15849 8.56696 9.24608 9.51311 10.07805 10.67668 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.001818 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.261794 B =15394.727954 C =15732.809652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 N -0.443 5.443 4 C -0.310 4.310 5 H 0.104 0.896 6 C 0.032 3.968 7 N -0.862 5.862 8 Si 0.913 3.087 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.441 3.559 13 O -0.596 6.596 14 C -0.122 4.122 15 C -0.058 4.058 16 C -0.108 4.108 17 C -0.078 4.078 18 C -0.150 4.150 19 C 0.119 3.881 20 O -0.302 6.302 21 C 0.066 3.934 22 C 0.054 3.946 23 N -0.541 5.541 24 C 0.020 3.980 25 C 0.026 3.974 26 C -0.209 4.209 27 C -0.078 4.078 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.024 0.976 50 H 0.122 0.878 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -5.796 24.807 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.000 4.000 3 N -0.162 5.162 4 C -0.437 4.437 5 H 0.122 0.878 6 C -0.171 4.171 7 N -0.502 5.502 8 Si 0.740 3.260 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.230 3.770 13 O -0.482 6.482 14 C -0.163 4.163 15 C -0.096 4.096 16 C -0.108 4.108 17 C -0.096 4.096 18 C -0.169 4.169 19 C 0.074 3.926 20 O -0.215 6.215 21 C -0.010 4.010 22 C -0.074 4.074 23 N -0.265 5.265 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.228 4.228 27 C -0.096 4.096 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.140 0.860 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.328 -5.359 24.575 25.711 hybrid contribution -0.773 -0.244 -0.529 0.968 sum -6.102 -5.603 24.046 25.433 Atomic orbital electron populations 1.22182 0.96677 0.99799 1.02389 1.21322 0.94553 0.83761 1.00356 1.43847 1.55595 1.11140 1.05570 1.19711 1.35776 1.06137 0.82113 0.87847 1.25157 0.95845 0.97359 0.98771 1.70133 1.22512 1.30947 1.26568 0.86120 0.80328 0.79047 0.80530 1.20524 1.21220 1.19399 1.19998 0.84993 0.86896 0.85111 1.90499 1.52042 1.18561 1.87068 1.21547 1.02388 0.98861 0.93460 1.20255 1.02836 0.97426 0.89064 1.20016 0.93555 0.99775 0.97485 1.20921 0.99550 0.95731 0.93395 1.20373 0.94046 1.04555 0.97878 1.18980 0.93943 0.93872 0.85819 1.86122 1.28802 1.70791 1.35828 1.22761 0.82362 1.00592 0.95276 1.22202 0.96078 0.98890 0.90208 1.61905 1.48202 1.05777 1.10650 1.22480 0.96789 0.92385 1.01134 1.22394 0.99963 0.96971 0.92930 1.21160 0.99111 1.04288 0.98207 1.20887 0.95980 0.97859 0.94839 0.94532 0.95673 0.88484 0.88934 0.94781 0.92382 0.90772 0.90347 0.90686 0.90633 0.85367 0.85534 0.92094 0.91737 0.92443 0.89595 0.95635 0.91140 0.91265 0.91087 0.91287 0.95738 0.86050 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.66 37.16 0.36 -2.84 16 2 C 0.12 2.77 5.07 -4.04 -0.02 2.75 16 3 N -0.44 -11.34 2.64 -114.80 -0.30 -11.64 16 4 C -0.31 -8.64 9.39 -14.93 -0.14 -8.78 16 5 H 0.10 3.07 7.34 -52.49 -0.39 2.69 16 6 C 0.03 0.83 4.79 -17.46 -0.08 0.75 16 7 N -0.86 -22.16 8.77 55.50 0.49 -21.67 16 8 Si 0.91 20.53 29.64 -169.99 -5.04 15.49 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.44 10.80 7.58 -10.98 -0.08 10.72 16 13 O -0.60 -16.58 15.58 5.54 0.09 -16.50 16 14 C -0.12 -2.29 4.29 -27.88 -0.12 -2.41 16 15 C -0.06 -0.98 4.63 -27.88 -0.13 -1.11 16 16 C -0.11 -1.56 5.13 -104.60 -0.54 -2.10 16 17 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 18 C -0.15 -1.92 9.99 -39.43 -0.39 -2.32 16 19 C 0.12 1.52 6.69 -39.22 -0.26 1.25 16 20 O -0.30 -3.58 10.10 -19.42 -0.20 -3.78 16 21 C 0.07 0.56 4.94 37.16 0.18 0.74 16 22 C 0.05 0.38 5.38 -3.82 -0.02 0.36 16 23 N -0.54 -4.31 4.91 -251.26 -1.23 -5.54 16 24 C 0.02 0.13 9.39 60.07 0.56 0.70 16 25 C 0.03 0.16 9.52 60.06 0.57 0.73 16 26 C -0.21 -2.54 9.04 -39.43 -0.36 -2.89 16 27 C -0.08 -1.04 9.69 -39.60 -0.38 -1.42 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.49 6.50 -51.93 -0.34 0.15 16 30 H 0.10 2.34 6.18 -51.93 -0.32 2.02 16 31 H 0.09 2.22 6.02 -51.93 -0.31 1.91 16 32 H 0.03 0.67 6.69 -51.92 -0.35 0.32 16 33 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 34 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.08 1.41 6.45 -51.93 -0.33 1.07 16 36 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 37 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 38 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.06 0.49 6.29 -51.93 -0.33 0.17 16 41 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 42 H 0.06 0.31 7.96 -51.93 -0.41 -0.10 16 43 H 0.09 0.60 7.94 -51.93 -0.41 0.19 16 44 H 0.03 0.14 8.09 -51.93 -0.42 -0.28 16 45 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 46 H 0.07 0.47 6.79 -51.93 -0.35 0.11 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 49 H 0.02 0.13 8.13 -51.93 -0.42 -0.29 16 50 H 0.12 1.20 6.30 -52.49 -0.33 0.86 16 51 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -31.37 404.53 -9.76 -41.13 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.42 Total: 3.69 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.24 Total: -7.28 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -1.05 Total: -38.85 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.11 Total: -20.27 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.04 Total: 15.49 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.37 -9.76 -41.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.904 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds