Wall clock time and date at job start Tue Mar 31 2020 19:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46875 * 2 1 4 4 C 1.37092 * 119.99932 * 263.94260 * 3 2 1 5 5 H 1.07998 * 120.00467 * 189.07524 * 4 3 2 6 6 C 1.38954 * 120.00059 * 9.07726 * 4 3 2 7 7 N 1.31415 * 120.00029 * 28.34223 * 6 4 3 8 8 Si 1.86806 * 120.00246 * 208.35279 * 6 4 3 9 9 H 1.48501 * 109.47176 * 94.98834 * 8 6 4 10 10 H 1.48497 * 109.46918 * 214.98933 * 8 6 4 11 11 H 1.48499 * 109.46656 * 334.99053 * 8 6 4 12 12 C 1.34776 * 120.00131 * 83.94375 * 3 2 1 13 13 O 1.21298 * 119.99786 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99919 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.46623 * 179.97438 * 14 12 3 16 16 C 1.50704 * 109.46623 * 180.02562 * 15 14 12 17 17 C 1.38258 * 119.94596 * 90.00032 * 16 15 14 18 18 C 1.38154 * 120.05546 * 179.97438 * 17 16 15 19 19 C 1.38730 * 119.94347 * 0.02562 * 18 17 16 20 20 O 1.35899 * 120.05665 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00005 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47150 * 180.02562 * 21 20 19 23 23 N 1.46902 * 109.47241 * 66.06778 * 22 21 20 24 24 C 1.46901 * 110.99963 * 75.80067 * 23 22 21 25 25 C 1.46895 * 110.99878 * 199.75388 * 23 22 21 26 26 C 1.38735 * 119.88679 * 0.27322 * 19 18 17 27 27 C 1.38142 * 119.94490 * 359.42467 * 26 19 18 28 28 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47531 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.46848 * 60.00657 * 1 2 3 31 31 H 1.08994 * 109.47531 * 239.99697 * 2 1 3 32 32 H 1.09008 * 109.46884 * 119.99325 * 2 1 3 33 33 H 0.96999 * 119.99987 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47342 * 60.00056 * 14 12 3 35 35 H 1.08997 * 109.46814 * 299.99479 * 14 12 3 36 36 H 1.08995 * 109.47087 * 60.00057 * 15 14 12 37 37 H 1.08997 * 109.47228 * 299.99383 * 15 14 12 38 38 H 1.08001 * 119.97234 * 359.97438 * 17 16 15 39 39 H 1.08000 * 120.02445 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.47189 * 299.99893 * 21 20 19 41 41 H 1.08996 * 109.47557 * 60.00199 * 21 20 19 42 42 H 1.08993 * 109.47213 * 186.07040 * 22 21 20 43 43 H 1.09001 * 109.46773 * 306.07010 * 22 21 20 44 44 H 1.08997 * 109.46990 * 59.99625 * 24 23 22 45 45 H 1.08999 * 109.47221 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.46755 * 300.00156 * 24 23 22 47 47 H 1.08993 * 109.47527 * 64.70459 * 25 23 22 48 48 H 1.09004 * 109.47310 * 184.70060 * 25 23 22 49 49 H 1.09004 * 109.47501 * 304.69839 * 25 23 22 50 50 H 1.08002 * 120.02222 * 179.72229 * 26 19 18 51 51 H 1.08000 * 119.97345 * 180.27170 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3649 1.9858 -1.1806 5 1 2.8604 2.9453 -1.1710 6 6 2.0786 1.3639 -2.3898 7 7 1.0519 0.5489 -2.4827 8 14 3.1535 1.6861 -3.8834 9 1 4.1869 0.6247 -3.9877 10 1 2.3135 1.6813 -5.1079 11 1 3.8144 3.0083 -3.7415 12 6 2.1268 2.0577 1.1607 13 8 2.5315 3.2012 1.1606 14 6 1.7464 1.3930 2.4586 15 6 1.9626 2.3712 3.6150 16 6 1.5828 1.7063 4.9130 17 6 2.5323 1.0051 5.6329 18 6 2.1867 0.3951 6.8234 19 6 0.8856 0.4862 7.2959 20 8 0.5430 -0.1134 8.4664 21 6 -0.8146 0.0215 8.8914 22 6 -1.0089 -0.7135 10.2192 23 7 -0.2282 -0.0441 11.2682 24 6 -0.8814 1.1996 11.6979 25 6 -0.0017 -0.9411 12.4092 26 6 -0.0668 1.1851 6.5685 27 6 0.2853 1.7986 5.3819 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8519 0.1151 -3.3269 34 1 2.3665 0.5095 2.6098 35 1 0.6975 1.0989 2.4223 36 1 1.3428 3.2549 3.4640 37 1 3.0116 2.6649 3.6511 38 1 3.5450 0.9341 5.2644 39 1 2.9287 -0.1529 7.3851 40 1 -1.0509 1.0774 9.0231 41 1 -1.4755 -0.4075 8.1382 42 1 -2.0647 -0.7028 10.4893 43 1 -0.6705 -1.7446 10.1166 44 1 -1.8724 0.9725 12.0908 45 1 -0.2824 1.6751 12.4745 46 1 -0.9738 1.8742 10.8467 47 1 0.6166 -1.7814 12.0937 48 1 0.5054 -0.3957 13.2052 49 1 -0.9590 -1.3118 12.7757 50 1 -1.0815 1.2536 6.9321 51 1 -0.4547 2.3465 4.8174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930619451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:10 Heat of formation + Delta-G solvation = -53.966041 kcal Electronic energy + Delta-G solvation = -28170.220011 eV Core-core repulsion = 24262.685139 eV Total energy + Delta-G solvation = -3907.534872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.12813 -40.45115 -39.04374 -37.83995 -37.00467 -34.45438 -33.65593 -32.03937 -31.30227 -31.10371 -29.67397 -28.47741 -27.04148 -25.59601 -24.86993 -23.83470 -23.55911 -22.22245 -21.50492 -20.38752 -19.13894 -18.75170 -17.95671 -17.27958 -17.10328 -16.60463 -16.21959 -16.07566 -15.92816 -15.91717 -15.63525 -15.47009 -15.13961 -14.56717 -14.50413 -14.40546 -14.20119 -13.93668 -13.67421 -13.53543 -13.41307 -13.25358 -13.11788 -12.97686 -12.77363 -12.62340 -12.60322 -12.40533 -12.28584 -12.22017 -12.09613 -12.05096 -11.88440 -11.61327 -11.53144 -11.45218 -10.81787 -10.25806 -9.88804 -9.68659 -9.27818 -8.93339 -8.33365 -5.79856 0.45681 0.51441 1.36268 1.43828 1.54966 2.06934 2.30662 2.32866 2.82609 2.99324 3.06097 3.17992 3.83731 3.87933 3.98542 4.01677 4.09301 4.24028 4.26845 4.27652 4.38464 4.39761 4.43056 4.46203 4.47888 4.52730 4.60910 4.64369 4.74652 4.77999 4.80731 4.84692 4.88916 4.91859 5.03167 5.03641 5.05110 5.16687 5.20409 5.29430 5.39410 5.44651 5.46811 5.49452 5.81192 5.87992 5.95863 6.05658 6.09463 6.12143 6.57750 6.58494 7.23542 7.56036 8.13213 8.65529 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.001818 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.261794 B =15394.727954 C =15732.809652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.124 3.876 3 N -0.454 5.454 4 C -0.355 4.355 5 H 0.069 0.931 6 C 0.008 3.992 7 N -0.864 5.864 8 Si 0.975 3.025 9 H -0.268 1.268 10 H -0.274 1.274 11 H -0.281 1.281 12 C 0.427 3.573 13 O -0.641 6.641 14 C -0.107 4.107 15 C -0.047 4.047 16 C -0.123 4.123 17 C -0.080 4.080 18 C -0.158 4.158 19 C 0.118 3.882 20 O -0.314 6.314 21 C 0.059 3.941 22 C 0.056 3.944 23 N -0.566 5.566 24 C 0.021 3.979 25 C 0.026 3.974 26 C -0.207 4.207 27 C -0.083 4.083 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.273 0.727 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.034 0.966 50 H 0.145 0.855 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -7.605 25.987 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 N -0.172 5.172 4 C -0.483 4.483 5 H 0.087 0.913 6 C -0.196 4.196 7 N -0.502 5.502 8 Si 0.799 3.201 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.206 1.206 12 C 0.218 3.782 13 O -0.531 6.531 14 C -0.146 4.146 15 C -0.085 4.085 16 C -0.123 4.123 17 C -0.098 4.098 18 C -0.177 4.177 19 C 0.072 3.928 20 O -0.228 6.228 21 C -0.016 4.016 22 C -0.072 4.072 23 N -0.290 5.290 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.225 4.225 27 C -0.101 4.101 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.053 0.947 50 H 0.163 0.837 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.456 -7.212 25.762 27.520 hybrid contribution -0.493 0.295 -0.847 1.024 sum -6.948 -6.916 24.914 26.774 Atomic orbital electron populations 1.22028 0.95549 1.01244 1.01237 1.21420 0.95436 0.82142 1.00924 1.44091 1.55549 1.12300 1.05309 1.19535 1.38322 1.06297 0.84109 0.91263 1.25806 0.96279 0.96933 1.00567 1.70204 1.22119 1.30313 1.27524 0.85215 0.78812 0.78490 0.77547 1.19343 1.19964 1.20581 1.21008 0.83961 0.86639 0.86624 1.90457 1.53896 1.20743 1.87957 1.21470 1.03191 0.99297 0.90685 1.20067 1.01829 0.96698 0.89897 1.19795 0.94558 1.01139 0.96812 1.21020 0.99798 0.95448 0.93540 1.20546 0.94678 1.04642 0.97789 1.19144 0.94040 0.93470 0.86100 1.86122 1.30828 1.70538 1.35275 1.23032 0.80986 1.01300 0.96319 1.22221 0.97132 0.98449 0.89373 1.61898 1.49028 1.06585 1.11506 1.22473 0.97343 0.91876 1.01001 1.22391 1.00486 0.96691 0.92569 1.21359 1.00197 1.03476 0.97493 1.21024 0.95677 0.97970 0.95415 0.91690 0.94610 0.91778 0.90828 0.91612 0.91659 0.88855 0.89068 0.92191 0.91848 0.84527 0.84413 0.91683 0.90373 0.90451 0.89737 0.94522 0.91018 0.91737 0.91412 0.90962 0.94724 0.83719 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 9.66 71.98 0.70 -5.07 16 2 C 0.12 5.42 5.07 86.38 0.44 5.86 16 3 N -0.45 -23.65 2.64 -635.51 -1.68 -25.32 16 4 C -0.36 -20.45 9.39 84.04 0.79 -19.66 16 5 H 0.07 4.37 7.34 -2.91 -0.02 4.35 16 6 C 0.01 0.41 4.79 84.93 0.41 0.82 16 7 N -0.86 -44.06 8.77 21.66 0.19 -43.87 16 8 Si 0.97 42.30 29.64 68.60 2.03 44.34 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 C 0.43 21.37 7.58 87.66 0.66 22.04 16 13 O -0.64 -37.33 15.58 -3.08 -0.05 -37.38 16 14 C -0.11 -3.92 4.29 29.85 0.13 -3.79 16 15 C -0.05 -1.59 4.63 29.85 0.14 -1.45 16 16 C -0.12 -3.43 5.13 -19.85 -0.10 -3.54 16 17 C -0.08 -2.04 9.69 22.25 0.22 -1.83 16 18 C -0.16 -3.80 9.99 22.37 0.22 -3.58 16 19 C 0.12 2.78 6.69 22.51 0.15 2.93 16 20 O -0.31 -6.82 10.10 -92.42 -0.93 -7.75 16 21 C 0.06 0.86 4.94 71.98 0.36 1.22 16 22 C 0.06 0.67 5.38 86.30 0.46 1.13 16 23 N -0.57 -8.01 4.91 -948.85 -4.66 -12.66 16 24 C 0.02 0.24 9.39 127.69 1.20 1.44 16 25 C 0.03 0.28 9.52 127.69 1.22 1.50 16 26 C -0.21 -4.56 9.04 22.37 0.20 -4.36 16 27 C -0.08 -2.08 9.69 22.25 0.22 -1.87 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.03 1.34 6.50 -2.39 -0.02 1.32 16 30 H 0.06 3.05 6.18 -2.39 -0.01 3.04 16 31 H 0.07 3.49 6.02 -2.39 -0.01 3.47 16 32 H 0.07 2.43 6.69 -2.38 -0.02 2.42 16 33 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 34 H 0.09 3.07 7.42 -2.39 -0.02 3.06 16 35 H 0.09 3.13 6.45 -2.39 -0.02 3.11 16 36 H 0.06 2.17 8.04 -2.39 -0.02 2.15 16 37 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.06 0.90 6.29 -2.39 -0.02 0.89 16 41 H 0.08 0.93 7.65 -2.39 -0.02 0.91 16 42 H 0.08 0.62 7.96 -2.39 -0.02 0.60 16 43 H 0.08 1.02 7.94 -2.39 -0.02 1.00 16 44 H 0.04 0.32 8.09 -2.39 -0.02 0.30 16 45 H 0.07 0.76 8.07 -2.39 -0.02 0.74 16 46 H 0.06 0.77 6.79 -2.39 -0.02 0.75 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.70 8.04 -2.39 -0.02 0.68 16 49 H 0.03 0.29 8.13 -2.39 -0.02 0.27 16 50 H 0.15 2.43 6.30 -2.91 -0.02 2.41 16 51 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -69.17 404.53 3.21 -65.96 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.90 Total: 24.91 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 7.40 Total: -8.22 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -6.15 Total: -81.85 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.98 Total: -45.13 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.34 kcal Total: -69.17 3.21 -65.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.994 kcal (2) G-P(sol) polarization free energy of solvation -69.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds