Wall clock time and date at job start Tue Mar 31 2020 18:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47375 * 2 1 4 4 C 1.46498 * 120.00168 * 270.00442 * 3 2 1 5 5 C 1.50699 * 109.46901 * 269.99862 * 4 3 2 6 6 H 1.07998 * 120.00201 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00033 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00151 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47494 * 59.99481 * 9 7 5 11 11 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46811 * 299.99533 * 9 7 5 13 13 C 1.34776 * 119.99776 * 89.99461 * 3 2 1 14 14 O 1.21285 * 119.99815 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00345 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47395 * 179.97438 * 15 13 3 17 17 C 1.46905 * 111.00018 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.46956 * 324.99874 * 17 16 15 19 19 C 1.52994 * 109.47118 * 85.00309 * 17 16 15 20 20 C 1.50707 * 109.46696 * 205.00330 * 17 16 15 21 21 C 1.38289 * 119.94688 * 319.99308 * 20 17 16 22 22 C 1.38117 * 120.05983 * 180.02562 * 21 20 17 23 23 C 1.38755 * 119.94118 * 0.02562 * 22 21 20 24 24 O 1.35898 * 120.05839 * 179.97438 * 23 22 21 25 25 C 1.42902 * 116.99730 * 0.02562 * 24 23 22 26 26 C 1.38715 * 119.88882 * 0.02562 * 23 22 21 27 27 C 1.50705 * 120.02514 * 179.72734 * 26 23 22 28 28 C 1.38166 * 119.94528 * 359.97438 * 26 23 22 29 29 H 1.08993 * 109.47297 * 299.99718 * 1 2 3 30 30 H 1.08999 * 109.46955 * 60.00473 * 1 2 3 31 31 H 1.08998 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47401 * 240.00367 * 2 1 3 33 33 H 1.08995 * 109.47305 * 119.99893 * 2 1 3 34 34 H 1.08999 * 109.47103 * 29.99387 * 4 3 2 35 35 H 1.08993 * 109.47339 * 149.99417 * 4 3 2 36 36 H 0.97006 * 119.99949 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47048 * 59.99421 * 15 13 3 38 38 H 1.09001 * 109.46858 * 299.99941 * 15 13 3 39 39 H 1.00897 * 111.00357 * 303.95109 * 16 15 13 40 40 H 1.09000 * 109.46834 * 299.99804 * 19 17 16 41 41 H 1.09000 * 109.47562 * 59.99936 * 19 17 16 42 42 H 1.09008 * 109.46902 * 179.97438 * 19 17 16 43 43 H 1.08000 * 119.96911 * 0.03380 * 21 20 17 44 44 H 1.07995 * 120.03380 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.47162 * 60.00566 * 25 24 23 46 46 H 1.08998 * 109.47469 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47521 * 300.00502 * 25 24 23 48 48 H 1.09000 * 109.47390 * 90.00172 * 27 26 23 49 49 H 1.09000 * 109.46441 * 209.99754 * 27 26 23 50 50 H 1.09005 * 109.47010 * 329.99212 * 27 26 23 51 51 H 1.08001 * 119.97380 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0976 -3.4164 10 1 6.1417 0.6410 -3.5943 11 1 6.1612 2.7975 -4.7024 12 1 6.8409 2.6209 -2.3811 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2058 3.5888 17 6 2.0783 1.5452 4.8802 18 1 1.2183 0.8805 4.7986 19 6 3.3157 0.7331 5.2676 20 6 1.8099 2.5866 5.9360 21 6 2.5370 3.7629 5.9459 22 6 2.2933 4.7186 6.9128 23 6 1.3184 4.4975 7.8750 24 8 1.0770 5.4360 8.8277 25 6 1.8642 6.6277 8.7786 26 6 0.5912 3.3163 7.8635 27 6 -0.4642 3.0702 8.9108 28 6 0.8388 2.3633 6.8942 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1410 -1.1384 36 1 3.6754 3.5172 -4.4435 37 1 2.6227 0.4187 2.5299 38 1 0.9443 1.0115 2.5301 39 1 3.2590 2.5439 3.5216 40 1 3.5097 -0.0200 4.5040 41 1 4.1757 1.3978 5.3492 42 1 3.1433 0.2433 6.2261 43 1 3.2959 3.9344 5.1969 44 1 2.8616 5.6369 6.9204 45 1 1.7032 7.1304 7.8248 46 1 1.5715 7.2904 9.5929 47 1 2.9186 6.3711 8.8806 48 1 -1.4227 3.4502 8.5571 49 1 -0.5453 1.9999 9.1003 50 1 -0.1879 3.5825 9.8325 51 1 0.2731 1.4433 6.8850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932574546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:26 Heat of formation + Delta-G solvation = -52.290015 kcal Electronic energy + Delta-G solvation = -28714.013369 eV Core-core repulsion = 24806.551176 eV Total energy + Delta-G solvation = -3907.462194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44572 -39.18529 -38.16013 -36.12409 -35.16098 -32.94538 -32.71567 -31.37651 -30.06028 -29.13993 -27.78980 -27.55504 -26.70919 -25.45446 -23.22867 -22.98270 -22.28362 -21.95645 -20.10602 -18.41290 -18.08467 -16.66522 -16.62205 -16.36283 -15.95659 -15.76880 -15.31493 -15.05752 -14.57401 -14.54879 -14.19409 -13.99173 -13.75174 -13.57488 -13.32912 -13.23729 -13.08616 -12.98559 -12.67180 -12.42247 -12.32827 -12.15127 -12.05250 -11.97478 -11.83854 -11.63529 -11.41974 -11.16189 -11.05131 -11.01239 -10.90316 -10.80127 -10.71586 -10.50683 -10.11747 -9.63355 -8.89262 -8.87541 -8.42002 -8.30296 -8.05637 -7.61984 -6.02776 -4.07562 1.27679 1.35787 3.11235 3.31603 3.36267 3.38109 3.49411 3.59837 3.82302 4.36171 4.47217 4.65464 4.68646 4.74106 4.88143 4.92600 5.02575 5.07575 5.16697 5.20647 5.24872 5.27399 5.29930 5.31863 5.41646 5.45235 5.49269 5.53072 5.54563 5.64071 5.66846 5.72277 5.78162 5.84871 5.96078 6.04547 6.12002 6.25100 6.29233 6.31269 6.50043 6.55124 6.69775 6.95710 7.16816 7.26031 7.43152 7.49194 7.59005 7.94002 8.25744 8.47623 8.92286 9.15795 9.57403 11.05189 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.002332 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.857343 B =12001.542025 C =12829.588236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.041 3.959 16 N -0.665 5.665 17 C 0.127 3.873 18 H 0.085 0.915 19 C -0.179 4.179 20 C -0.095 4.095 21 C -0.059 4.059 22 C -0.203 4.203 23 C 0.118 3.882 24 O -0.318 6.318 25 C 0.027 3.973 26 C -0.120 4.120 27 C -0.102 4.102 28 C -0.080 4.080 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.351 0.649 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.056 0.944 46 H 0.097 0.903 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.062 0.938 50 H 0.067 0.933 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 -3.812 24.335 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.091 4.091 16 N -0.297 5.297 17 C 0.017 3.983 18 H 0.103 0.897 19 C -0.238 4.238 20 C -0.096 4.096 21 C -0.078 4.078 22 C -0.222 4.222 23 C 0.073 3.927 24 O -0.232 6.232 25 C -0.068 4.068 26 C -0.121 4.121 27 C -0.159 4.159 28 C -0.098 4.098 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.172 0.828 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.074 0.926 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.086 0.914 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.270 -2.768 24.263 25.213 hybrid contribution 1.958 -0.607 -0.647 2.150 sum -4.312 -3.375 23.616 24.243 Atomic orbital electron populations 1.22224 0.96819 1.01324 1.02414 1.21398 0.93511 0.84327 1.02503 1.48250 1.64085 1.13182 1.07716 1.19236 0.96113 0.93673 0.78140 1.21391 0.96954 1.31869 1.06226 0.92655 1.24938 0.97790 0.94965 0.96436 1.69926 1.35695 1.33382 1.14353 0.86571 0.84884 0.78192 0.77825 1.20304 1.21183 1.20230 1.20179 0.78873 0.87072 0.84873 1.90673 1.45168 1.17719 1.86948 1.21932 1.02191 0.94450 0.90513 1.60243 1.32697 1.37204 0.99534 1.20388 0.97851 0.92356 0.87727 0.89673 1.22517 0.98597 1.00654 1.02059 1.19617 0.97366 0.96136 0.96477 1.20746 0.98527 0.92267 0.96218 1.21212 1.01361 1.01670 0.97962 1.18809 0.95170 0.89454 0.89246 1.86023 1.60118 1.27592 1.49449 1.23033 0.95373 0.85340 1.03025 1.19145 1.00261 0.92888 0.99795 1.20572 0.96649 1.01647 0.96999 1.20673 0.97050 0.98406 0.93694 0.93004 0.92027 0.92256 0.90030 0.91948 0.95103 0.93915 0.92682 0.92911 0.88783 0.82830 0.92252 0.92124 0.91851 0.85595 0.85635 0.92565 0.88456 0.92772 0.91569 0.91871 0.91440 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.59 2.46 -175.07 -0.43 -13.02 16 4 C 0.25 6.50 5.16 -5.20 -0.03 6.48 16 5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.50 10.44 7.71 -10.99 -0.08 10.36 16 14 O -0.53 -13.40 15.78 5.55 0.09 -13.31 16 15 C 0.04 0.61 4.52 -4.98 -0.02 0.59 16 16 N -0.66 -9.50 5.33 -109.22 -0.58 -10.09 16 17 C 0.13 1.40 2.79 -68.86 -0.19 1.21 16 18 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 19 C -0.18 -1.71 9.14 37.15 0.34 -1.37 16 20 C -0.10 -1.11 4.96 -104.60 -0.52 -1.63 16 21 C -0.06 -0.73 9.32 -39.61 -0.37 -1.10 16 22 C -0.20 -2.35 9.04 -39.43 -0.36 -2.71 16 23 C 0.12 1.38 6.66 -39.21 -0.26 1.12 16 24 O -0.32 -3.40 9.54 -19.42 -0.19 -3.58 16 25 C 0.03 0.20 9.81 101.05 0.99 1.19 16 26 C -0.12 -1.33 5.89 -104.47 -0.62 -1.95 16 27 C -0.10 -0.89 9.79 36.01 0.35 -0.54 16 28 C -0.08 -0.85 9.32 -39.61 -0.37 -1.22 16 29 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.05 0.68 6.69 -51.93 -0.35 0.34 16 38 H 0.09 1.23 7.10 -51.93 -0.37 0.86 16 39 H 0.35 5.30 7.51 -39.29 -0.30 5.00 16 40 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 41 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.13 1.55 7.24 -52.49 -0.38 1.17 16 44 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 45 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 50 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 51 H 0.13 1.07 8.03 -52.49 -0.42 0.64 16 LS Contribution 413.49 15.07 6.23 6.23 Total: -1.00 -34.22 413.49 -8.91 -43.13 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.55 Total: 3.15 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.20 Total: -3.37 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.28 Total: -49.12 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.10 Total: -16.90 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.22 -8.91 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932574546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.157 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds