Wall clock time and date at job start Tue Mar 31 2020 18:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47375 * 2 1 4 4 C 1.46498 * 120.00168 * 270.00442 * 3 2 1 5 5 C 1.50699 * 109.46901 * 269.99862 * 4 3 2 6 6 H 1.07998 * 120.00201 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00033 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00151 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47494 * 59.99481 * 9 7 5 11 11 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46811 * 299.99533 * 9 7 5 13 13 C 1.34776 * 119.99776 * 89.99461 * 3 2 1 14 14 O 1.21285 * 119.99815 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00345 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47395 * 179.97438 * 15 13 3 17 17 C 1.46905 * 111.00018 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.46956 * 324.99874 * 17 16 15 19 19 C 1.52994 * 109.47118 * 85.00309 * 17 16 15 20 20 C 1.50707 * 109.46696 * 205.00330 * 17 16 15 21 21 C 1.38289 * 119.94688 * 319.99308 * 20 17 16 22 22 C 1.38117 * 120.05983 * 180.02562 * 21 20 17 23 23 C 1.38755 * 119.94118 * 0.02562 * 22 21 20 24 24 O 1.35898 * 120.05839 * 179.97438 * 23 22 21 25 25 C 1.42902 * 116.99730 * 0.02562 * 24 23 22 26 26 C 1.38715 * 119.88882 * 0.02562 * 23 22 21 27 27 C 1.50705 * 120.02514 * 179.72734 * 26 23 22 28 28 C 1.38166 * 119.94528 * 359.97438 * 26 23 22 29 29 H 1.08993 * 109.47297 * 299.99718 * 1 2 3 30 30 H 1.08999 * 109.46955 * 60.00473 * 1 2 3 31 31 H 1.08998 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47401 * 240.00367 * 2 1 3 33 33 H 1.08995 * 109.47305 * 119.99893 * 2 1 3 34 34 H 1.08999 * 109.47103 * 29.99387 * 4 3 2 35 35 H 1.08993 * 109.47339 * 149.99417 * 4 3 2 36 36 H 0.97006 * 119.99949 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47048 * 59.99421 * 15 13 3 38 38 H 1.09001 * 109.46858 * 299.99941 * 15 13 3 39 39 H 1.00897 * 111.00357 * 303.95109 * 16 15 13 40 40 H 1.09000 * 109.46834 * 299.99804 * 19 17 16 41 41 H 1.09000 * 109.47562 * 59.99936 * 19 17 16 42 42 H 1.09008 * 109.46902 * 179.97438 * 19 17 16 43 43 H 1.08000 * 119.96911 * 0.03380 * 21 20 17 44 44 H 1.07995 * 120.03380 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.47162 * 60.00566 * 25 24 23 46 46 H 1.08998 * 109.47469 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47521 * 300.00502 * 25 24 23 48 48 H 1.09000 * 109.47390 * 90.00172 * 27 26 23 49 49 H 1.09000 * 109.46441 * 209.99754 * 27 26 23 50 50 H 1.09005 * 109.47010 * 329.99212 * 27 26 23 51 51 H 1.08001 * 119.97380 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0976 -3.4164 10 1 6.1417 0.6410 -3.5943 11 1 6.1612 2.7975 -4.7024 12 1 6.8409 2.6209 -2.3811 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2058 3.5888 17 6 2.0783 1.5452 4.8802 18 1 1.2183 0.8805 4.7986 19 6 3.3157 0.7331 5.2676 20 6 1.8099 2.5866 5.9360 21 6 2.5370 3.7629 5.9459 22 6 2.2933 4.7186 6.9128 23 6 1.3184 4.4975 7.8750 24 8 1.0770 5.4360 8.8277 25 6 1.8642 6.6277 8.7786 26 6 0.5912 3.3163 7.8635 27 6 -0.4642 3.0702 8.9108 28 6 0.8388 2.3633 6.8942 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1410 -1.1384 36 1 3.6754 3.5172 -4.4435 37 1 2.6227 0.4187 2.5299 38 1 0.9443 1.0115 2.5301 39 1 3.2590 2.5439 3.5216 40 1 3.5097 -0.0200 4.5040 41 1 4.1757 1.3978 5.3492 42 1 3.1433 0.2433 6.2261 43 1 3.2959 3.9344 5.1969 44 1 2.8616 5.6369 6.9204 45 1 1.7032 7.1304 7.8248 46 1 1.5715 7.2904 9.5929 47 1 2.9186 6.3711 8.8806 48 1 -1.4227 3.4502 8.5571 49 1 -0.5453 1.9999 9.1003 50 1 -0.1879 3.5825 9.8325 51 1 0.2731 1.4433 6.8850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932574546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:24 Heat of formation + Delta-G solvation = -74.016182 kcal Electronic energy + Delta-G solvation = -28714.955487 eV Core-core repulsion = 24806.551176 eV Total energy + Delta-G solvation = -3908.404311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.26402 -40.70001 -39.06688 -37.19080 -36.72329 -34.90981 -33.67591 -32.41412 -31.54615 -30.05278 -29.20835 -28.41688 -27.55716 -26.85475 -24.73045 -24.14979 -23.57776 -22.88446 -20.97122 -19.93118 -18.88100 -18.61745 -17.94942 -17.59613 -17.12546 -16.75712 -16.66209 -16.39720 -15.94721 -15.47118 -15.28660 -15.09847 -14.77194 -14.64507 -14.48268 -14.36613 -14.20645 -13.92866 -13.83340 -13.61726 -13.53293 -13.26026 -13.15224 -13.01682 -12.89605 -12.81325 -12.69536 -12.62965 -12.47061 -12.41382 -12.13143 -11.87404 -11.84244 -11.77594 -11.72695 -11.59762 -10.64174 -10.54742 -9.71245 -9.41104 -9.33466 -8.90156 -8.21714 -6.36886 0.43689 0.50005 1.35752 1.40163 1.47477 1.89757 2.26552 2.41537 2.42869 2.79181 3.07338 3.29151 3.75339 3.82616 3.89228 3.95401 4.12042 4.22536 4.28777 4.32369 4.36757 4.37601 4.42407 4.47019 4.51073 4.54029 4.67768 4.69018 4.70404 4.74701 4.85774 4.88681 4.93386 4.96343 5.01522 5.04016 5.07255 5.23224 5.24123 5.36739 5.41570 5.45472 5.49959 5.58871 5.66988 5.87862 5.90355 6.07039 6.09449 6.32358 6.47573 6.71515 6.86214 7.29439 7.55254 8.85096 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.002332 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.857343 B =12001.542025 C =12829.588236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.493 3.507 14 O -0.589 6.589 15 C 0.060 3.940 16 N -0.683 5.683 17 C 0.132 3.868 18 H 0.105 0.895 19 C -0.173 4.173 20 C -0.105 4.105 21 C -0.079 4.079 22 C -0.214 4.214 23 C 0.105 3.895 24 O -0.330 6.330 25 C 0.020 3.980 26 C -0.131 4.131 27 C -0.099 4.099 28 C -0.079 4.079 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.020 0.980 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.343 0.657 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.134 0.866 45 H 0.054 0.946 46 H 0.121 0.879 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 -6.484 26.141 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.282 3.718 14 O -0.469 6.469 15 C -0.072 4.072 16 N -0.315 5.315 17 C 0.023 3.977 18 H 0.123 0.877 19 C -0.232 4.232 20 C -0.105 4.105 21 C -0.097 4.097 22 C -0.233 4.233 23 C 0.060 3.940 24 O -0.244 6.244 25 C -0.074 4.074 26 C -0.132 4.132 27 C -0.155 4.155 28 C -0.098 4.098 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.133 0.867 44 H 0.152 0.848 45 H 0.073 0.927 46 H 0.139 0.861 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.484 -5.495 26.097 27.446 hybrid contribution 1.967 0.290 -1.162 2.303 sum -4.517 -5.205 24.935 25.870 Atomic orbital electron populations 1.22157 0.94708 1.03480 1.01599 1.21749 0.95223 0.81310 1.03947 1.48285 1.64156 1.15124 1.06150 1.18652 0.95241 0.91369 0.80571 1.21676 0.97831 1.31925 1.06475 0.92781 1.25893 1.02456 0.94512 0.96497 1.70059 1.37866 1.34226 1.14812 0.85463 0.78951 0.79053 0.77311 1.18336 1.20453 1.20316 1.21324 0.77297 0.86646 0.86555 1.90639 1.47738 1.20554 1.87940 1.21839 1.04213 0.94233 0.86924 1.60224 1.32328 1.38165 1.00796 1.20453 0.99206 0.92288 0.85788 0.87716 1.22453 0.97420 1.00318 1.03031 1.19780 0.97624 0.96064 0.97080 1.20808 0.99090 0.93302 0.96542 1.21361 1.01802 1.02041 0.98067 1.19038 0.95354 0.90150 0.89467 1.86005 1.60849 1.28312 1.49207 1.23268 0.95607 0.84582 1.03973 1.19542 1.00547 0.92718 1.00393 1.20593 0.95910 1.02948 0.96090 1.20952 0.96616 0.99232 0.92971 0.92105 0.94595 0.88516 0.91106 0.87939 0.96239 0.98952 0.92453 0.90018 0.86159 0.83826 0.91615 0.93169 0.90317 0.86688 0.84812 0.92685 0.86122 0.92116 0.91276 0.89912 0.91771 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.24 71.98 0.74 -3.18 16 2 C 0.10 2.96 5.93 86.38 0.51 3.47 16 3 N -0.61 -25.65 2.46 -826.18 -2.03 -27.68 16 4 C 0.26 14.49 5.16 85.63 0.44 14.93 16 5 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.30 5.46 84.66 0.46 0.77 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 C 0.49 20.55 7.71 87.66 0.68 21.22 16 14 O -0.59 -31.20 15.78 -3.05 -0.05 -31.25 16 15 C 0.06 1.62 4.52 85.56 0.39 2.01 16 16 N -0.68 -18.80 5.33 -499.47 -2.66 -21.46 16 17 C 0.13 2.60 2.79 44.17 0.12 2.73 16 18 H 0.10 1.67 7.66 -2.39 -0.02 1.65 16 19 C -0.17 -2.88 9.14 71.98 0.66 -2.22 16 20 C -0.10 -2.31 4.96 -19.85 -0.10 -2.41 16 21 C -0.08 -1.97 9.32 22.25 0.21 -1.76 16 22 C -0.21 -5.02 9.04 22.36 0.20 -4.82 16 23 C 0.10 2.41 6.66 22.51 0.15 2.56 16 24 O -0.33 -6.87 9.54 -92.40 -0.88 -7.75 16 25 C 0.02 0.28 9.81 113.37 1.11 1.39 16 26 C -0.13 -2.72 5.89 -19.77 -0.12 -2.83 16 27 C -0.10 -1.54 9.79 71.24 0.70 -0.84 16 28 C -0.08 -1.53 9.32 22.25 0.21 -1.32 16 29 H 0.06 1.37 7.22 -2.39 -0.02 1.36 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 36 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 37 H 0.08 1.78 6.69 -2.38 -0.02 1.77 16 38 H 0.12 2.67 7.10 -2.39 -0.02 2.65 16 39 H 0.34 10.43 7.51 -89.70 -0.67 9.76 16 40 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 41 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 42 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.12 3.01 7.24 -2.91 -0.02 2.99 16 44 H 0.13 2.71 6.30 -2.91 -0.02 2.69 16 45 H 0.05 0.77 7.66 -2.38 -0.02 0.75 16 46 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 50 H 0.06 1.03 7.54 -2.38 -0.02 1.02 16 51 H 0.15 2.01 8.03 -2.91 -0.02 1.99 16 Total: -1.00 -78.95 413.49 3.53 -75.42 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.24 Total: 23.90 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 6.60 Total: -1.53 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.40 Total: -106.08 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.93 Total: -38.99 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -78.95 3.53 -75.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932574546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.406 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds