Wall clock time and date at job start Tue Mar 31 2020 18:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47067 * 2 1 4 4 C 1.46500 * 119.99815 * 269.99888 * 3 2 1 5 5 C 1.50703 * 109.46957 * 269.99796 * 4 3 2 6 6 H 1.07996 * 119.99944 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00055 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00049 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46982 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47333 * 119.99996 * 9 7 5 12 12 H 1.48499 * 109.46967 * 239.99729 * 9 7 5 13 13 C 1.34776 * 120.00350 * 89.99614 * 3 2 1 14 14 O 1.21282 * 120.00309 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99903 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46944 * 180.02562 * 15 13 3 17 17 C 1.46903 * 110.99804 * 179.97438 * 16 15 13 18 18 H 1.09009 * 109.46840 * 34.99458 * 17 16 15 19 19 C 1.52998 * 109.47032 * 274.99652 * 17 16 15 20 20 C 1.50700 * 109.47355 * 154.99385 * 17 16 15 21 21 C 1.38287 * 119.93983 * 39.97970 * 20 17 16 22 22 C 1.38123 * 120.05390 * 180.02562 * 21 20 17 23 23 C 1.38744 * 119.94541 * 359.97438 * 22 21 20 24 24 O 1.35899 * 120.05962 * 179.97438 * 23 22 21 25 25 C 1.42902 * 116.99864 * 0.02562 * 24 23 22 26 26 C 1.38711 * 119.88994 * 0.02562 * 23 22 21 27 27 C 1.50697 * 120.03040 * 180.02562 * 26 23 22 28 28 C 1.38165 * 119.94450 * 0.02562 * 26 23 22 29 29 H 1.08997 * 109.47572 * 300.00368 * 1 2 3 30 30 H 1.09000 * 109.47110 * 60.00672 * 1 2 3 31 31 H 1.09003 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47572 * 239.99632 * 2 1 3 33 33 H 1.09008 * 109.47064 * 119.99661 * 2 1 3 34 34 H 1.09003 * 109.47138 * 29.99715 * 4 3 2 35 35 H 1.09004 * 109.47152 * 150.00101 * 4 3 2 36 36 H 0.96994 * 120.00374 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47063 * 59.99519 * 15 13 3 38 38 H 1.09010 * 109.46628 * 299.99612 * 15 13 3 39 39 H 1.00894 * 111.00610 * 56.04009 * 16 15 13 40 40 H 1.09004 * 109.47007 * 59.99893 * 19 17 16 41 41 H 1.08996 * 109.47048 * 179.97438 * 19 17 16 42 42 H 1.08994 * 109.47008 * 300.00046 * 19 17 16 43 43 H 1.08001 * 119.97583 * 0.04213 * 21 20 17 44 44 H 1.08000 * 120.02757 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47056 * 60.00369 * 25 24 23 46 46 H 1.09002 * 109.47501 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.47328 * 300.00710 * 25 24 23 48 48 H 1.09002 * 109.47399 * 269.97901 * 27 26 23 49 49 H 1.08998 * 109.47522 * 29.98198 * 27 26 23 50 50 H 1.09008 * 109.47243 * 149.98239 * 27 26 23 51 51 H 1.08002 * 119.97562 * 179.72226 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0717 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3895 -2.8779 8 7 3.3492 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4175 10 1 6.6005 1.2395 -2.4174 11 1 5.9203 1.4161 -4.7380 12 1 6.6209 3.3964 -3.5263 13 6 2.2428 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3096 2.2064 3.5888 17 6 2.0761 1.5463 4.8802 18 1 2.3278 0.4888 4.7985 19 6 0.6032 1.6914 5.2681 20 6 2.9391 2.1880 5.9358 21 6 3.1124 3.5599 5.9455 22 6 3.9034 4.1505 6.9116 23 6 4.5239 3.3661 7.8732 24 8 5.3030 3.9447 8.8246 25 6 5.4391 5.3664 8.7752 26 6 4.3484 1.9902 7.8614 27 6 5.0204 1.1353 8.9048 28 6 3.5571 1.4041 6.8923 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6750 3.5154 -4.4444 37 1 2.6226 0.4189 2.5299 38 1 0.9442 1.0116 2.5302 39 1 1.7840 3.0651 3.5217 40 1 -0.0210 1.2272 4.5045 41 1 0.4298 1.2012 6.2260 42 1 0.3515 2.7487 5.3498 43 1 2.6287 4.1702 5.1971 44 1 4.0381 5.2220 6.9189 45 1 4.4577 5.8291 8.8792 46 1 6.0855 5.6980 9.5879 47 1 5.8782 5.6564 7.8207 48 1 6.0032 0.8294 8.5461 49 1 5.1316 1.7067 9.8263 50 1 4.4124 0.2511 9.0967 51 1 3.4238 0.3324 6.8799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933489308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:29 Heat of formation + Delta-G solvation = -51.942772 kcal Electronic energy + Delta-G solvation = -28741.246318 eV Core-core repulsion = 24833.799182 eV Total energy + Delta-G solvation = -3907.447136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43542 -39.18953 -38.15425 -36.12412 -35.16789 -32.93531 -32.70177 -31.37437 -30.07163 -29.14329 -27.77918 -27.55470 -26.70141 -25.45509 -23.23972 -22.97199 -22.28828 -21.95352 -20.10351 -18.40049 -18.07467 -16.69858 -16.63207 -16.32083 -15.94591 -15.87345 -15.20276 -14.94892 -14.59688 -14.54122 -14.13758 -14.05501 -13.86518 -13.63869 -13.36776 -13.17241 -13.10067 -12.83523 -12.65609 -12.51754 -12.33843 -12.14828 -12.04261 -11.99059 -11.73258 -11.62903 -11.52182 -11.18047 -11.05460 -11.00628 -10.86175 -10.79429 -10.70588 -10.51091 -10.09541 -9.57879 -8.87416 -8.86405 -8.40848 -8.31244 -8.04863 -7.61764 -6.01460 -4.05591 1.28893 1.36889 3.12452 3.32171 3.39528 3.42797 3.49520 3.60938 3.83080 4.36015 4.49437 4.65844 4.69459 4.74326 4.88835 4.93727 5.01817 5.07393 5.15187 5.21617 5.25687 5.28094 5.29419 5.33435 5.39800 5.41568 5.50273 5.54372 5.61621 5.63363 5.64798 5.72024 5.78980 5.80181 5.93549 6.02643 6.12852 6.23461 6.30253 6.31917 6.46938 6.55617 6.70932 6.95415 7.16625 7.27210 7.43449 7.47798 7.59790 7.95788 8.27307 8.47263 8.94843 9.16057 9.59635 11.06672 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.002527 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.803410 B =11078.109845 C =12358.525448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.042 3.958 16 N -0.664 5.664 17 C 0.127 3.873 18 H 0.085 0.915 19 C -0.179 4.179 20 C -0.095 4.095 21 C -0.059 4.059 22 C -0.203 4.203 23 C 0.118 3.882 24 O -0.318 6.318 25 C 0.028 3.972 26 C -0.120 4.120 27 C -0.102 4.102 28 C -0.080 4.080 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.350 0.650 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.054 0.946 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -4.361 24.381 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.090 4.090 16 N -0.296 5.296 17 C 0.017 3.983 18 H 0.104 0.896 19 C -0.238 4.238 20 C -0.096 4.096 21 C -0.077 4.077 22 C -0.222 4.222 23 C 0.073 3.927 24 O -0.232 6.232 25 C -0.068 4.068 26 C -0.121 4.121 27 C -0.159 4.159 28 C -0.098 4.098 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.170 0.830 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.081 0.919 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.301 -3.863 24.318 24.843 hybrid contribution -0.056 0.124 -0.664 0.678 sum -3.358 -3.740 23.654 24.182 Atomic orbital electron populations 1.22222 0.96931 1.01331 1.02205 1.21395 0.93360 0.84378 1.02635 1.48250 1.64054 1.13205 1.07720 1.19248 0.96233 0.93588 0.78131 1.21485 0.96950 1.31645 1.06093 0.92424 1.24936 0.97830 0.94967 0.96439 1.69940 1.35597 1.33672 1.14339 0.86450 0.84723 0.78067 0.78239 1.19775 1.21034 1.20891 1.20188 0.78822 0.87125 0.84872 1.90671 1.44833 1.18047 1.86941 1.21933 0.99899 0.96723 0.90487 1.60210 1.62933 1.06900 0.99541 1.20390 0.92211 0.98015 0.87704 0.89641 1.22513 0.96677 1.02512 1.02058 1.19609 0.99928 0.93631 0.96454 1.20733 0.96398 0.94435 0.96179 1.21207 1.03122 0.99905 0.97975 1.18805 0.92503 0.92083 0.89271 1.86024 1.65151 1.22436 1.49554 1.23032 1.01816 0.78878 1.03043 1.19145 1.02272 0.90818 0.99835 1.20572 0.99923 0.98349 0.97037 1.20676 0.96041 0.99402 0.93684 0.93264 0.92038 0.92222 0.89966 0.91853 0.95112 0.93987 0.92837 0.88732 0.92963 0.82994 0.92321 0.91835 0.92165 0.85635 0.85640 0.92783 0.88460 0.92560 0.91546 0.91440 0.91870 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.68 5.93 -4.05 -0.02 1.66 16 3 N -0.60 -12.58 2.46 -175.06 -0.43 -13.01 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 5 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.20 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.50 10.43 7.71 -10.98 -0.08 10.35 16 14 O -0.53 -13.38 15.78 5.56 0.09 -13.30 16 15 C 0.04 0.62 4.52 -4.97 -0.02 0.59 16 16 N -0.66 -9.49 5.33 -109.21 -0.58 -10.07 16 17 C 0.13 1.40 2.79 -68.86 -0.19 1.21 16 18 H 0.09 0.88 7.66 -51.92 -0.40 0.48 16 19 C -0.18 -1.63 9.14 37.16 0.34 -1.29 16 20 C -0.10 -1.13 4.96 -104.60 -0.52 -1.65 16 21 C -0.06 -0.73 9.32 -39.61 -0.37 -1.10 16 22 C -0.20 -2.38 9.04 -39.44 -0.36 -2.74 16 23 C 0.12 1.41 6.66 -39.22 -0.26 1.15 16 24 O -0.32 -3.47 9.54 -19.42 -0.19 -3.65 16 25 C 0.03 0.20 9.81 101.05 0.99 1.19 16 26 C -0.12 -1.36 5.89 -104.48 -0.62 -1.98 16 27 C -0.10 -0.92 9.79 36.00 0.35 -0.57 16 28 C -0.08 -0.87 9.32 -39.61 -0.37 -1.24 16 29 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.83 6.44 -51.92 -0.33 0.49 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.09 1.30 7.32 -51.93 -0.38 0.92 16 38 H 0.05 0.64 6.48 -51.92 -0.34 0.31 16 39 H 0.35 5.10 7.51 -39.30 -0.30 4.81 16 40 H 0.06 0.51 7.45 -51.93 -0.39 0.13 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 43 H 0.13 1.53 7.24 -52.49 -0.38 1.15 16 44 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 45 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 50 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 51 H 0.13 1.10 8.03 -52.49 -0.42 0.68 16 LS Contribution 413.49 15.07 6.23 6.23 Total: -1.00 -34.66 413.49 -8.91 -43.57 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.55 Total: 2.64 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.20 Total: -3.46 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.28 Total: -49.24 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.10 Total: -16.95 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.66 -8.91 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933489308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.377 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds