Wall clock time and date at job start Tue Mar 31 2020 18:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47067 * 2 1 4 4 C 1.46500 * 119.99815 * 269.99888 * 3 2 1 5 5 C 1.50703 * 109.46957 * 269.99796 * 4 3 2 6 6 H 1.07996 * 119.99944 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00055 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00049 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46982 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47333 * 119.99996 * 9 7 5 12 12 H 1.48499 * 109.46967 * 239.99729 * 9 7 5 13 13 C 1.34776 * 120.00350 * 89.99614 * 3 2 1 14 14 O 1.21282 * 120.00309 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99903 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46944 * 180.02562 * 15 13 3 17 17 C 1.46903 * 110.99804 * 179.97438 * 16 15 13 18 18 H 1.09009 * 109.46840 * 34.99458 * 17 16 15 19 19 C 1.52998 * 109.47032 * 274.99652 * 17 16 15 20 20 C 1.50700 * 109.47355 * 154.99385 * 17 16 15 21 21 C 1.38287 * 119.93983 * 39.97970 * 20 17 16 22 22 C 1.38123 * 120.05390 * 180.02562 * 21 20 17 23 23 C 1.38744 * 119.94541 * 359.97438 * 22 21 20 24 24 O 1.35899 * 120.05962 * 179.97438 * 23 22 21 25 25 C 1.42902 * 116.99864 * 0.02562 * 24 23 22 26 26 C 1.38711 * 119.88994 * 0.02562 * 23 22 21 27 27 C 1.50697 * 120.03040 * 180.02562 * 26 23 22 28 28 C 1.38165 * 119.94450 * 0.02562 * 26 23 22 29 29 H 1.08997 * 109.47572 * 300.00368 * 1 2 3 30 30 H 1.09000 * 109.47110 * 60.00672 * 1 2 3 31 31 H 1.09003 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47572 * 239.99632 * 2 1 3 33 33 H 1.09008 * 109.47064 * 119.99661 * 2 1 3 34 34 H 1.09003 * 109.47138 * 29.99715 * 4 3 2 35 35 H 1.09004 * 109.47152 * 150.00101 * 4 3 2 36 36 H 0.96994 * 120.00374 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47063 * 59.99519 * 15 13 3 38 38 H 1.09010 * 109.46628 * 299.99612 * 15 13 3 39 39 H 1.00894 * 111.00610 * 56.04009 * 16 15 13 40 40 H 1.09004 * 109.47007 * 59.99893 * 19 17 16 41 41 H 1.08996 * 109.47048 * 179.97438 * 19 17 16 42 42 H 1.08994 * 109.47008 * 300.00046 * 19 17 16 43 43 H 1.08001 * 119.97583 * 0.04213 * 21 20 17 44 44 H 1.08000 * 120.02757 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47056 * 60.00369 * 25 24 23 46 46 H 1.09002 * 109.47501 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.47328 * 300.00710 * 25 24 23 48 48 H 1.09002 * 109.47399 * 269.97901 * 27 26 23 49 49 H 1.08998 * 109.47522 * 29.98198 * 27 26 23 50 50 H 1.09008 * 109.47243 * 149.98239 * 27 26 23 51 51 H 1.08002 * 119.97562 * 179.72226 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0717 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3895 -2.8779 8 7 3.3492 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4175 10 1 6.6005 1.2395 -2.4174 11 1 5.9203 1.4161 -4.7380 12 1 6.6209 3.3964 -3.5263 13 6 2.2428 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3096 2.2064 3.5888 17 6 2.0761 1.5463 4.8802 18 1 2.3278 0.4888 4.7985 19 6 0.6032 1.6914 5.2681 20 6 2.9391 2.1880 5.9358 21 6 3.1124 3.5599 5.9455 22 6 3.9034 4.1505 6.9116 23 6 4.5239 3.3661 7.8732 24 8 5.3030 3.9447 8.8246 25 6 5.4391 5.3664 8.7752 26 6 4.3484 1.9902 7.8614 27 6 5.0204 1.1353 8.9048 28 6 3.5571 1.4041 6.8923 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6750 3.5154 -4.4444 37 1 2.6226 0.4189 2.5299 38 1 0.9442 1.0116 2.5302 39 1 1.7840 3.0651 3.5217 40 1 -0.0210 1.2272 4.5045 41 1 0.4298 1.2012 6.2260 42 1 0.3515 2.7487 5.3498 43 1 2.6287 4.1702 5.1971 44 1 4.0381 5.2220 6.9189 45 1 4.4577 5.8291 8.8792 46 1 6.0855 5.6980 9.5879 47 1 5.8782 5.6564 7.8207 48 1 6.0032 0.8294 8.5461 49 1 5.1316 1.7067 9.8263 50 1 4.4124 0.2511 9.0967 51 1 3.4238 0.3324 6.8799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933489308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:28 Heat of formation + Delta-G solvation = -74.031772 kcal Electronic energy + Delta-G solvation = -28742.204169 eV Core-core repulsion = 24833.799182 eV Total energy + Delta-G solvation = -3908.404987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26511 -40.70042 -39.06700 -37.19112 -36.72539 -34.91136 -33.67885 -32.41235 -31.54693 -30.05659 -29.20382 -28.41883 -27.56026 -26.85761 -24.74342 -24.11328 -23.60994 -22.88683 -20.97149 -19.92075 -18.88379 -18.62944 -17.95323 -17.64615 -17.17012 -16.68218 -16.61724 -16.33827 -15.88957 -15.51599 -15.45808 -15.11428 -14.76835 -14.63860 -14.45531 -14.39403 -14.10801 -13.94215 -13.83206 -13.61762 -13.54866 -13.26748 -13.09438 -13.06292 -12.91537 -12.79545 -12.70385 -12.65827 -12.48111 -12.41243 -12.16305 -11.89012 -11.79829 -11.79001 -11.67745 -11.59890 -10.64924 -10.53058 -9.71405 -9.44323 -9.29676 -8.90189 -8.22321 -6.36768 0.43501 0.49958 1.35162 1.37965 1.49793 1.89196 2.27899 2.41297 2.42516 2.79099 3.06939 3.29215 3.75137 3.82664 3.89133 3.95326 4.12929 4.23612 4.26896 4.31819 4.35740 4.36733 4.46652 4.47276 4.50705 4.54396 4.66780 4.67963 4.70509 4.74431 4.85614 4.87889 4.94201 4.96513 5.01053 5.03845 5.07162 5.22958 5.24621 5.36455 5.40564 5.45249 5.49582 5.59318 5.66979 5.87838 5.90259 6.07786 6.09631 6.35126 6.47522 6.72051 6.86312 7.29677 7.55366 8.84745 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.002527 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.803410 B =11078.109845 C =12358.525448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.060 3.940 16 N -0.685 5.685 17 C 0.131 3.869 18 H 0.102 0.898 19 C -0.172 4.172 20 C -0.105 4.105 21 C -0.078 4.078 22 C -0.214 4.214 23 C 0.105 3.895 24 O -0.330 6.330 25 C 0.020 3.980 26 C -0.132 4.132 27 C -0.099 4.099 28 C -0.081 4.081 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.021 0.979 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.344 0.656 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.117 0.883 44 H 0.135 0.865 45 H 0.061 0.939 46 H 0.120 0.880 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 -7.009 26.090 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.071 4.071 16 N -0.317 5.317 17 C 0.022 3.978 18 H 0.120 0.880 19 C -0.231 4.231 20 C -0.106 4.106 21 C -0.097 4.097 22 C -0.233 4.233 23 C 0.060 3.940 24 O -0.244 6.244 25 C -0.074 4.074 26 C -0.133 4.133 27 C -0.155 4.155 28 C -0.099 4.099 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.039 0.961 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.163 0.837 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.135 0.865 44 H 0.153 0.847 45 H 0.080 0.920 46 H 0.139 0.861 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.205 -6.564 26.051 27.056 hybrid contribution -0.102 1.000 -1.155 1.531 sum -3.308 -5.564 24.896 25.724 Atomic orbital electron populations 1.22148 0.94544 1.03490 1.01611 1.21747 0.95295 0.81346 1.03919 1.48284 1.64124 1.15146 1.06162 1.18663 0.95142 0.91445 0.80592 1.21742 0.97960 1.31739 1.06349 0.93067 1.25855 1.02342 0.94537 0.96498 1.70054 1.37673 1.34385 1.14823 0.85380 0.79112 0.77986 0.78408 1.19209 1.19275 1.20845 1.21332 0.77261 0.86689 0.86552 1.90637 1.47414 1.20848 1.87933 1.21828 1.02280 0.96136 0.86903 1.60178 1.63666 1.07073 1.00774 1.20449 0.93283 0.98277 0.85754 0.87978 1.22441 0.95256 1.02332 1.03050 1.19794 1.00307 0.93451 0.97043 1.20815 0.97216 0.95141 0.96513 1.21367 1.03217 1.00620 0.98057 1.19036 0.92776 0.92706 0.89532 1.86005 1.64936 1.24131 1.49319 1.23268 1.02839 0.77381 1.03941 1.19540 1.02282 0.91013 1.00443 1.20590 1.00131 0.98650 0.96178 1.20954 0.95319 1.00574 0.93055 0.92059 0.94482 0.88583 0.91179 0.88053 0.96073 0.98757 0.92448 0.86734 0.89491 0.83671 0.91403 0.90418 0.92981 0.86505 0.84746 0.92015 0.86144 0.92745 0.91387 0.91715 0.89913 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.61 -25.61 2.46 -826.14 -2.03 -27.64 16 4 C 0.26 14.45 5.16 85.63 0.44 14.89 16 5 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.37 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C 0.49 20.50 7.71 87.66 0.68 21.18 16 14 O -0.59 -31.09 15.78 -3.04 -0.05 -31.14 16 15 C 0.06 1.63 4.52 85.56 0.39 2.02 16 16 N -0.68 -18.79 5.33 -499.43 -2.66 -21.45 16 17 C 0.13 2.60 2.79 44.17 0.12 2.72 16 18 H 0.10 1.68 7.66 -2.38 -0.02 1.67 16 19 C -0.17 -2.69 9.14 71.98 0.66 -2.04 16 20 C -0.11 -2.35 4.96 -19.85 -0.10 -2.45 16 21 C -0.08 -1.96 9.32 22.25 0.21 -1.75 16 22 C -0.21 -5.07 9.04 22.36 0.20 -4.86 16 23 C 0.10 2.45 6.66 22.50 0.15 2.60 16 24 O -0.33 -7.01 9.54 -92.41 -0.88 -7.89 16 25 C 0.02 0.29 9.81 113.37 1.11 1.40 16 26 C -0.13 -2.82 5.89 -19.77 -0.12 -2.93 16 27 C -0.10 -1.61 9.79 71.24 0.70 -0.91 16 28 C -0.08 -1.60 9.32 22.25 0.21 -1.40 16 29 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.10 2.24 6.44 -2.38 -0.02 2.23 16 34 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 35 H -0.01 -0.36 7.42 -2.38 -0.02 -0.38 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.11 2.69 7.32 -2.39 -0.02 2.68 16 38 H 0.09 1.79 6.48 -2.38 -0.02 1.77 16 39 H 0.34 10.09 7.51 -89.70 -0.67 9.42 16 40 H 0.07 0.94 7.45 -2.38 -0.02 0.92 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 43 H 0.12 3.01 7.24 -2.91 -0.02 2.99 16 44 H 0.13 2.73 6.30 -2.91 -0.02 2.72 16 45 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 46 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 0.78 7.66 -2.39 -0.02 0.76 16 48 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.08 7.53 -2.39 -0.02 1.06 16 50 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 51 H 0.15 2.12 8.03 -2.91 -0.02 2.10 16 Total: -1.00 -79.53 413.49 3.53 -75.99 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.24 Total: 22.88 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 6.60 Total: -1.83 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.40 Total: -106.04 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.93 Total: -39.03 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.53 3.53 -75.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933489308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.963 kcal (2) G-P(sol) polarization free energy of solvation -79.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds