Wall clock time and date at job start Tue Mar 31 2020 19:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47469 * 2 1 4 4 C 1.42895 * 114.00422 * 180.02562 * 3 2 1 5 5 C 1.53896 * 113.58784 * 247.66623 * 4 3 2 6 6 C 1.53264 * 86.88194 * 220.42662 * 5 4 3 7 7 C 1.52454 * 128.58187 * 245.05517 * 6 5 4 8 8 C 1.52459 * 128.58122 * 165.10906 * 6 5 4 9 9 H 1.08995 * 117.51743 * 10.15487 * 8 6 5 10 10 C 1.50703 * 117.51086 * 225.04531 * 8 6 5 11 11 O 1.21279 * 119.99901 * 0.02562 * 10 8 6 12 12 N 1.34778 * 119.99562 * 180.02562 * 10 8 6 13 13 C 1.46504 * 119.99724 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.46937 * 179.97438 * 13 12 10 15 15 C 1.29455 * 117.69219 * 94.74116 * 14 13 12 16 16 C 1.50315 * 123.65303 * 180.58216 * 15 14 13 17 17 N 1.47007 * 109.20382 * 349.50465 * 16 15 14 18 18 C 1.36936 * 121.37165 * 222.71813 * 17 16 15 19 19 H 1.08007 * 120.00067 * 156.11469 * 18 17 16 20 20 C 1.38806 * 120.00582 * 336.10612 * 18 17 16 21 21 N 1.31624 * 120.00033 * 344.32776 * 20 18 17 22 22 Si 1.86802 * 120.00450 * 164.31903 * 20 18 17 23 23 H 1.48506 * 109.46769 * 94.57715 * 22 20 18 24 24 H 1.48495 * 109.47173 * 214.57901 * 22 20 18 25 25 H 1.48497 * 109.47000 * 334.58406 * 22 20 18 26 26 C 1.47335 * 117.25257 * 42.73272 * 17 16 15 27 27 C 1.49968 * 117.69209 * 274.99908 * 14 13 12 28 28 C 1.53263 * 87.69226 * 25.08360 * 6 5 4 29 29 H 1.09003 * 109.47101 * 299.99826 * 1 2 3 30 30 H 1.08993 * 109.47466 * 59.99900 * 1 2 3 31 31 H 1.09003 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47101 * 240.00174 * 2 1 3 33 33 H 1.08997 * 109.47418 * 120.00594 * 2 1 3 34 34 H 1.08996 * 112.83345 * 18.88107 * 4 3 2 35 35 H 1.09000 * 113.64115 * 334.92149 * 5 4 3 36 36 H 1.08994 * 113.64851 * 105.92855 * 5 4 3 37 37 H 1.09002 * 117.51461 * 349.84861 * 7 6 5 38 38 H 1.09001 * 117.51125 * 134.91120 * 7 6 5 39 39 H 0.96996 * 119.99881 * 0.02562 * 12 10 8 40 40 H 1.09001 * 109.46859 * 300.00420 * 13 12 10 41 41 H 1.09002 * 109.46908 * 59.99502 * 13 12 10 42 42 H 1.07997 * 118.17250 * 0.85713 * 15 14 13 43 43 H 1.08995 * 109.67856 * 229.47884 * 16 15 14 44 44 H 1.09001 * 109.38148 * 109.34771 * 16 15 14 45 45 H 0.96996 * 120.00590 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.78255 * 178.62128 * 26 17 16 47 47 H 1.09008 * 109.82320 * 57.83896 * 26 17 16 48 48 H 1.09002 * 109.31496 * 281.28755 * 27 14 13 49 49 H 1.08994 * 109.32000 * 40.90847 * 27 14 13 50 50 H 1.08999 * 113.64099 * 220.41917 * 28 6 5 51 51 H 1.08996 * 113.64339 * 89.41347 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 4.0030 2.0428 1.3038 6 6 4.9774 2.8341 0.4246 7 6 6.4952 2.7158 0.3429 8 6 5.8498 4.0249 0.8058 9 1 5.9242 4.2764 1.8638 10 6 5.8867 5.1936 -0.1449 11 8 5.2370 5.1633 -1.1686 12 7 6.6417 6.2724 0.1424 13 6 6.6772 7.4088 -0.7816 14 6 7.5881 8.4756 -0.2311 15 6 8.8183 8.4831 -0.6342 16 6 9.8431 9.4767 -0.1633 17 7 9.1710 10.5425 0.5940 18 6 9.5069 11.8590 0.4230 19 1 8.7937 12.6338 0.6628 20 6 10.7639 12.1979 -0.0583 21 7 11.7308 11.3048 -0.0597 22 14 11.0836 13.9213 -0.7042 23 1 11.6536 14.7589 0.3815 24 1 12.0438 13.8559 -1.8350 25 1 9.8073 14.5190 -1.1723 26 6 8.1215 10.1358 1.5446 27 6 7.0071 9.4500 0.7497 28 6 3.9480 2.7264 -0.7057 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9274 0.5460 -0.3260 35 1 3.2975 2.6701 1.8487 36 1 4.4893 1.3013 1.9376 37 1 6.9940 2.1062 1.0964 38 1 6.9462 2.6994 -0.6493 39 1 7.1616 6.2964 0.9609 40 1 7.0494 7.0773 -1.7510 41 1 5.6720 7.8141 -0.8978 42 1 9.1241 7.7365 -1.3521 43 1 10.3573 9.9086 -1.0218 44 1 10.5661 8.9738 0.4791 45 1 12.6094 11.5416 -0.3957 46 1 7.7245 11.0140 2.0538 47 1 8.5342 9.4407 2.2759 48 1 6.4320 10.2036 0.2116 49 1 6.3502 8.9196 1.4390 50 1 4.3904 2.5328 -1.6829 51 1 3.2273 3.5440 -0.7201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001144166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:28 Heat of formation + Delta-G solvation = 2.445143 kcal Electronic energy + Delta-G solvation = -28051.915029 eV Core-core repulsion = 24146.826330 eV Total energy + Delta-G solvation = -3905.088699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.62712 -39.14652 -37.86147 -37.11279 -34.88747 -33.57846 -32.81921 -31.04118 -30.81595 -29.74564 -27.21586 -26.03624 -24.80880 -23.34756 -23.27580 -22.81176 -22.62066 -21.08610 -20.28481 -18.74482 -17.73247 -17.40360 -17.13605 -16.09157 -15.95768 -15.64787 -15.47481 -15.16338 -14.97887 -14.48050 -14.27258 -13.93659 -13.82473 -13.56951 -13.41799 -13.17552 -12.93813 -12.85057 -12.53724 -12.31514 -12.26983 -12.11264 -11.98903 -11.65657 -11.58192 -11.42452 -11.34579 -10.93540 -10.84374 -10.74277 -10.57429 -10.42046 -10.33398 -10.08427 -9.85230 -9.79588 -9.66859 -9.58614 -8.93309 -8.70180 -8.07573 -6.77169 -5.82327 -3.20838 2.48092 2.57596 3.27019 3.36461 3.43807 3.46353 3.48472 3.60554 4.14880 4.33042 4.42517 4.47587 4.55277 4.58489 4.69338 4.74728 4.93117 4.96552 5.00148 5.15005 5.26345 5.31078 5.34009 5.38309 5.39664 5.45553 5.53277 5.56409 5.57690 5.69846 5.73084 5.82050 5.83254 5.94342 5.98955 6.01774 6.05938 6.15026 6.31789 6.45715 6.54528 6.71345 6.84421 6.99354 7.14532 7.23384 7.30341 7.62540 7.70930 7.80135 8.29787 8.35417 9.16976 9.79797 10.37616 11.28224 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.037528 B = 0.001695 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.927131 B =16518.903520 C =16697.303215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.062 3.938 5 C -0.112 4.112 6 C -0.129 4.129 7 C -0.121 4.121 8 C -0.170 4.170 9 H 0.124 0.876 10 C 0.539 3.461 11 O -0.541 6.541 12 N -0.717 5.717 13 C 0.158 3.842 14 C -0.166 4.166 15 C -0.124 4.124 16 C 0.194 3.806 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.069 0.931 20 C -0.001 4.001 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.090 4.090 28 C -0.075 4.075 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.254 0.746 46 H 0.057 0.943 47 H 0.022 0.978 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.235 -23.475 2.708 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.004 3.996 5 C -0.149 4.149 6 C -0.130 4.130 7 C -0.158 4.158 8 C -0.191 4.191 9 H 0.142 0.858 10 C 0.324 3.676 11 O -0.419 6.419 12 N -0.368 5.368 13 C 0.036 3.964 14 C -0.167 4.167 15 C -0.145 4.145 16 C 0.069 3.931 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C -0.112 4.112 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.664 -23.263 1.892 28.109 hybrid contribution 0.814 0.713 0.088 1.086 sum -14.850 -22.550 1.980 27.073 Atomic orbital electron populations 1.21751 0.93855 1.02148 1.03213 1.22499 0.95596 0.84149 0.99875 1.87973 1.20694 1.26072 1.94572 1.23632 0.80793 0.98292 0.96854 1.23058 0.96737 0.98528 0.96612 1.21815 0.91715 0.98963 1.00497 1.22831 0.93164 0.96532 1.03290 1.22144 1.07846 0.89111 1.00040 0.85806 1.19619 0.79040 0.82800 0.86090 1.90684 1.43356 1.80987 1.26844 1.46144 1.47807 1.17222 1.25596 1.20447 0.99569 0.84524 0.91900 1.20495 0.94980 0.98341 1.02859 1.23274 0.95789 0.98713 0.96725 1.19756 0.90245 0.86603 0.96497 1.44121 1.41498 1.03104 1.43080 1.19187 0.96080 0.82614 1.39674 0.91356 1.24980 0.95033 0.97702 1.02169 1.70008 1.01628 1.33964 1.49920 0.86244 0.77713 0.84134 0.78498 1.21486 1.21559 1.20461 1.20955 0.89293 0.96854 0.91186 1.20755 0.98742 0.96707 0.96709 1.22580 0.95585 0.96609 0.96448 0.91853 0.91809 0.91225 0.93451 0.93505 0.89483 0.88668 0.91023 0.87489 0.87885 0.76399 0.91761 0.91659 0.88813 0.88857 0.94162 0.93614 0.92450 0.95951 0.91733 0.92873 0.90731 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.15 0.38 -0.53 16 2 C 0.06 0.39 6.50 37.15 0.24 0.63 16 3 O -0.37 -3.73 10.35 -35.23 -0.36 -4.09 16 4 C 0.06 0.55 4.31 -25.80 -0.11 0.44 16 5 C -0.11 -0.92 7.93 -26.13 -0.21 -1.12 16 6 C -0.13 -1.23 2.87 -154.79 -0.45 -1.67 16 7 C -0.12 -1.01 10.24 -26.94 -0.28 -1.29 16 8 C -0.17 -1.70 6.19 -91.98 -0.57 -2.27 16 9 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 10 C 0.54 7.21 7.61 -10.98 -0.08 7.13 16 11 O -0.54 -9.05 15.14 5.56 0.08 -8.96 16 12 N -0.72 -9.29 5.55 -61.47 -0.34 -9.64 16 13 C 0.16 2.38 5.66 -5.19 -0.03 2.35 16 14 C -0.17 -2.82 5.23 -100.99 -0.53 -3.35 16 15 C -0.12 -2.33 9.47 -35.78 -0.34 -2.67 16 16 C 0.19 4.52 5.23 -5.10 -0.03 4.49 16 17 N -0.59 -14.66 3.01 -173.68 -0.52 -15.19 16 18 C -0.25 -6.69 9.71 -15.06 -0.15 -6.84 16 19 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 20 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 21 N -0.91 -25.94 11.08 55.49 0.61 -25.33 16 22 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.14 2.91 6.58 -3.53 -0.02 2.89 16 27 C -0.09 -1.55 5.94 -28.18 -0.17 -1.72 16 28 C -0.07 -0.81 6.30 -26.13 -0.16 -0.97 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 4.55 8.46 -40.82 -0.35 4.21 16 40 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 41 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 42 H 0.09 1.59 7.74 -52.49 -0.41 1.18 16 43 H 0.09 2.44 6.41 -51.93 -0.33 2.10 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 47 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.10 1.26 8.05 -51.93 -0.42 0.84 16 LS Contribution 411.78 15.07 6.21 6.21 Total: -1.00 -31.26 411.78 -10.97 -42.23 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -9.04 Total: 2.84 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.58 Total: -4.62 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.25 Total: -50.15 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.28 Total: -13.05 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.26 -10.97 -42.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001144166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.675 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds