Wall clock time and date at job start Tue Mar 31 2020 19:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47469 * 2 1 4 4 C 1.42895 * 114.00422 * 180.02562 * 3 2 1 5 5 C 1.53896 * 113.58784 * 247.66623 * 4 3 2 6 6 C 1.53264 * 86.88194 * 220.42662 * 5 4 3 7 7 C 1.52454 * 128.58187 * 245.05517 * 6 5 4 8 8 C 1.52459 * 128.58122 * 165.10906 * 6 5 4 9 9 H 1.08995 * 117.51743 * 10.15487 * 8 6 5 10 10 C 1.50703 * 117.51086 * 225.04531 * 8 6 5 11 11 O 1.21279 * 119.99901 * 0.02562 * 10 8 6 12 12 N 1.34778 * 119.99562 * 180.02562 * 10 8 6 13 13 C 1.46504 * 119.99724 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.46937 * 179.97438 * 13 12 10 15 15 C 1.29455 * 117.69219 * 94.74116 * 14 13 12 16 16 C 1.50315 * 123.65303 * 180.58216 * 15 14 13 17 17 N 1.47007 * 109.20382 * 349.50465 * 16 15 14 18 18 C 1.36936 * 121.37165 * 222.71813 * 17 16 15 19 19 H 1.08007 * 120.00067 * 156.11469 * 18 17 16 20 20 C 1.38806 * 120.00582 * 336.10612 * 18 17 16 21 21 N 1.31624 * 120.00033 * 344.32776 * 20 18 17 22 22 Si 1.86802 * 120.00450 * 164.31903 * 20 18 17 23 23 H 1.48506 * 109.46769 * 94.57715 * 22 20 18 24 24 H 1.48495 * 109.47173 * 214.57901 * 22 20 18 25 25 H 1.48497 * 109.47000 * 334.58406 * 22 20 18 26 26 C 1.47335 * 117.25257 * 42.73272 * 17 16 15 27 27 C 1.49968 * 117.69209 * 274.99908 * 14 13 12 28 28 C 1.53263 * 87.69226 * 25.08360 * 6 5 4 29 29 H 1.09003 * 109.47101 * 299.99826 * 1 2 3 30 30 H 1.08993 * 109.47466 * 59.99900 * 1 2 3 31 31 H 1.09003 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47101 * 240.00174 * 2 1 3 33 33 H 1.08997 * 109.47418 * 120.00594 * 2 1 3 34 34 H 1.08996 * 112.83345 * 18.88107 * 4 3 2 35 35 H 1.09000 * 113.64115 * 334.92149 * 5 4 3 36 36 H 1.08994 * 113.64851 * 105.92855 * 5 4 3 37 37 H 1.09002 * 117.51461 * 349.84861 * 7 6 5 38 38 H 1.09001 * 117.51125 * 134.91120 * 7 6 5 39 39 H 0.96996 * 119.99881 * 0.02562 * 12 10 8 40 40 H 1.09001 * 109.46859 * 300.00420 * 13 12 10 41 41 H 1.09002 * 109.46908 * 59.99502 * 13 12 10 42 42 H 1.07997 * 118.17250 * 0.85713 * 15 14 13 43 43 H 1.08995 * 109.67856 * 229.47884 * 16 15 14 44 44 H 1.09001 * 109.38148 * 109.34771 * 16 15 14 45 45 H 0.96996 * 120.00590 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.78255 * 178.62128 * 26 17 16 47 47 H 1.09008 * 109.82320 * 57.83896 * 26 17 16 48 48 H 1.09002 * 109.31496 * 281.28755 * 27 14 13 49 49 H 1.08994 * 109.32000 * 40.90847 * 27 14 13 50 50 H 1.08999 * 113.64099 * 220.41917 * 28 6 5 51 51 H 1.08996 * 113.64339 * 89.41347 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 4.0030 2.0428 1.3038 6 6 4.9774 2.8341 0.4246 7 6 6.4952 2.7158 0.3429 8 6 5.8498 4.0249 0.8058 9 1 5.9242 4.2764 1.8638 10 6 5.8867 5.1936 -0.1449 11 8 5.2370 5.1633 -1.1686 12 7 6.6417 6.2724 0.1424 13 6 6.6772 7.4088 -0.7816 14 6 7.5881 8.4756 -0.2311 15 6 8.8183 8.4831 -0.6342 16 6 9.8431 9.4767 -0.1633 17 7 9.1710 10.5425 0.5940 18 6 9.5069 11.8590 0.4230 19 1 8.7937 12.6338 0.6628 20 6 10.7639 12.1979 -0.0583 21 7 11.7308 11.3048 -0.0597 22 14 11.0836 13.9213 -0.7042 23 1 11.6536 14.7589 0.3815 24 1 12.0438 13.8559 -1.8350 25 1 9.8073 14.5190 -1.1723 26 6 8.1215 10.1358 1.5446 27 6 7.0071 9.4500 0.7497 28 6 3.9480 2.7264 -0.7057 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9274 0.5460 -0.3260 35 1 3.2975 2.6701 1.8487 36 1 4.4893 1.3013 1.9376 37 1 6.9940 2.1062 1.0964 38 1 6.9462 2.6994 -0.6493 39 1 7.1616 6.2964 0.9609 40 1 7.0494 7.0773 -1.7510 41 1 5.6720 7.8141 -0.8978 42 1 9.1241 7.7365 -1.3521 43 1 10.3573 9.9086 -1.0218 44 1 10.5661 8.9738 0.4791 45 1 12.6094 11.5416 -0.3957 46 1 7.7245 11.0140 2.0538 47 1 8.5342 9.4407 2.2759 48 1 6.4320 10.2036 0.2116 49 1 6.3502 8.9196 1.4390 50 1 4.3904 2.5328 -1.6829 51 1 3.2273 3.5440 -0.7201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001144166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:26 Heat of formation + Delta-G solvation = -15.656628 kcal Electronic energy + Delta-G solvation = -28052.699981 eV Core-core repulsion = 24146.826330 eV Total energy + Delta-G solvation = -3905.873651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.48033 -40.13705 -39.28444 -37.92695 -36.35335 -34.57556 -34.17422 -32.59240 -31.53681 -31.41783 -28.76398 -26.77076 -26.34175 -24.65503 -24.17859 -23.81681 -23.41478 -22.72565 -21.27647 -19.60487 -19.40819 -18.40195 -17.88320 -17.40924 -17.08292 -16.84965 -16.48703 -16.34756 -16.13586 -15.79966 -15.36374 -15.27333 -15.13582 -14.96539 -14.48853 -14.35700 -13.96037 -13.77487 -13.63882 -13.60618 -13.27674 -13.12832 -12.95841 -12.95115 -12.80545 -12.67819 -12.59010 -12.24085 -12.22447 -12.11394 -11.98513 -11.71775 -11.54540 -11.29306 -11.27600 -10.94495 -10.70676 -10.65270 -10.32678 -10.07617 -9.65410 -8.75539 -7.89231 -5.30014 1.17144 1.46213 1.48253 1.51163 1.57736 2.34402 2.50787 2.65703 2.93187 3.28198 3.38580 3.61585 3.64350 3.73711 3.83261 3.85273 3.87751 3.95640 4.11047 4.15675 4.22809 4.41870 4.42756 4.52101 4.52907 4.60817 4.66030 4.73397 4.74974 4.82225 4.83013 4.84742 4.89020 4.91054 5.02301 5.05561 5.09614 5.10444 5.19283 5.20394 5.25828 5.33889 5.36570 5.43525 5.47306 5.60922 5.75785 6.15494 6.33261 6.39539 6.59454 7.13020 7.26640 7.83019 8.36596 9.19438 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.037528 B = 0.001695 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.927131 B =16518.903520 C =16697.303215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.400 6.400 4 C 0.067 3.933 5 C -0.100 4.100 6 C -0.135 4.135 7 C -0.103 4.103 8 C -0.178 4.178 9 H 0.149 0.851 10 C 0.535 3.465 11 O -0.580 6.580 12 N -0.710 5.710 13 C 0.169 3.831 14 C -0.139 4.139 15 C -0.141 4.141 16 C 0.205 3.795 17 N -0.615 5.615 18 C -0.258 4.258 19 H 0.070 0.930 20 C -0.053 4.053 21 N -0.939 5.939 22 Si 0.967 3.033 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.139 3.861 27 C -0.084 4.084 28 C -0.087 4.087 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.413 0.587 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.057 0.943 44 H 0.015 0.985 45 H 0.250 0.750 46 H 0.059 0.941 47 H 0.029 0.971 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.061 0.939 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.331 -25.262 3.973 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.320 6.320 4 C 0.009 3.991 5 C -0.137 4.137 6 C -0.136 4.136 7 C -0.140 4.140 8 C -0.199 4.199 9 H 0.167 0.833 10 C 0.323 3.677 11 O -0.460 6.460 12 N -0.361 5.361 13 C 0.045 3.955 14 C -0.140 4.140 15 C -0.161 4.161 16 C 0.080 3.920 17 N -0.339 5.339 18 C -0.388 4.388 19 H 0.087 0.913 20 C -0.248 4.248 21 N -0.585 5.585 22 Si 0.795 3.205 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.197 1.197 26 C 0.013 3.987 27 C -0.123 4.123 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.249 0.751 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.075 0.925 44 H 0.033 0.967 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.080 0.920 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.780 -25.062 3.191 30.329 hybrid contribution 1.060 1.254 -0.297 1.668 sum -15.721 -23.809 2.895 28.677 Atomic orbital electron populations 1.21779 0.93401 1.03291 1.02446 1.22706 0.96075 0.83044 1.00947 1.87947 1.21334 1.28003 1.94710 1.23663 0.80621 0.97951 0.96830 1.22972 0.95988 0.98490 0.96292 1.21906 0.92437 0.99115 1.00105 1.22955 0.92170 0.95162 1.03677 1.22197 1.09182 0.88155 1.00342 0.83318 1.20225 0.78004 0.83388 0.86054 1.90678 1.44870 1.81725 1.28730 1.45998 1.47924 1.16579 1.25581 1.20186 0.98676 0.84571 0.92034 1.20596 0.94345 0.97887 1.01133 1.22937 0.95649 0.98826 0.98731 1.19401 0.91005 0.86903 0.94684 1.44396 1.42381 1.02674 1.44430 1.19516 0.96126 0.84013 1.39169 0.91261 1.25714 0.94994 1.01165 1.02888 1.70162 1.01743 1.35645 1.50994 0.85266 0.77506 0.80128 0.77598 1.21177 1.21938 1.19674 1.21143 0.89009 0.97414 0.91096 1.20693 0.97911 0.96706 0.96954 1.22538 0.96001 0.97097 0.96785 0.92379 0.92807 0.89131 0.92658 0.92047 0.87560 0.89534 0.88447 0.84319 0.88809 0.75104 0.92290 0.91749 0.87043 0.92498 0.96720 0.94105 0.92266 0.95276 0.91999 0.89409 0.91999 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.05 0.60 6.50 71.98 0.47 1.07 16 3 O -0.40 -7.66 10.35 -148.98 -1.54 -9.20 16 4 C 0.07 1.08 4.31 31.20 0.13 1.22 16 5 C -0.10 -1.39 7.93 30.99 0.25 -1.14 16 6 C -0.13 -2.30 2.87 -52.37 -0.15 -2.45 16 7 C -0.10 -1.41 10.24 30.46 0.31 -1.10 16 8 C -0.18 -3.11 6.19 -11.68 -0.07 -3.18 16 9 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 10 C 0.54 13.57 7.61 87.66 0.67 14.23 16 11 O -0.58 -19.30 15.14 -3.02 -0.05 -19.34 16 12 N -0.71 -16.89 5.55 -466.78 -2.59 -19.48 16 13 C 0.17 4.78 5.66 85.63 0.48 5.27 16 14 C -0.14 -4.49 5.23 -15.14 -0.08 -4.57 16 15 C -0.14 -5.24 9.47 27.10 0.26 -4.98 16 16 C 0.21 9.83 5.23 85.42 0.45 10.28 16 17 N -0.61 -30.60 3.01 -703.40 -2.12 -32.71 16 18 C -0.26 -14.18 9.71 84.03 0.82 -13.37 16 19 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 20 C -0.05 -2.94 5.01 84.86 0.42 -2.52 16 21 N -0.94 -55.10 11.08 21.65 0.24 -54.86 16 22 Si 0.97 44.96 29.58 68.60 2.03 46.99 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 C 0.14 5.48 6.58 86.25 0.57 6.05 16 27 C -0.08 -2.71 5.94 29.65 0.18 -2.53 16 28 C -0.09 -1.88 6.30 30.98 0.20 -1.68 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 1.28 7.87 -2.39 -0.02 1.26 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 8.16 8.46 -92.71 -0.78 7.38 16 40 H 0.06 1.77 7.79 -2.39 -0.02 1.76 16 41 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 42 H 0.11 3.72 7.74 -2.91 -0.02 3.69 16 43 H 0.06 3.11 6.41 -2.39 -0.02 3.09 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.06 2.28 7.96 -2.39 -0.02 2.27 16 47 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 Total: -1.00 -69.98 411.78 1.72 -68.26 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.12 Total: 20.69 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.63 Total: -0.32 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.47 Total: -107.06 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.59 Total: -28.55 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.98 1.72 -68.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001144166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.600 kcal (2) G-P(sol) polarization free energy of solvation -69.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds