Wall clock time and date at job start Tue Mar 31 2020 19:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42904 * 109.47139 * 2 1 4 4 C 1.42898 * 114.00030 * 179.97438 * 3 2 1 5 5 C 1.53885 * 113.59296 * 247.66672 * 4 3 2 6 6 C 1.53257 * 86.88414 * 220.43044 * 5 4 3 7 7 C 1.52463 * 128.58075 * 245.05376 * 6 5 4 8 8 C 1.52463 * 128.58686 * 165.11177 * 6 5 4 9 9 H 1.08994 * 117.51262 * 225.04724 * 8 6 5 10 10 C 1.50707 * 117.50902 * 10.14583 * 8 6 5 11 11 O 1.21280 * 120.00336 * 0.02562 * 10 8 6 12 12 N 1.34776 * 119.99506 * 180.02562 * 10 8 6 13 13 C 1.46504 * 119.99815 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.47075 * 179.97438 * 13 12 10 15 15 C 1.29455 * 117.69330 * 94.73862 * 14 13 12 16 16 C 1.50317 * 123.65446 * 180.58533 * 15 14 13 17 17 N 1.47010 * 109.20115 * 349.50149 * 16 15 14 18 18 C 1.36932 * 121.37264 * 222.75922 * 17 16 15 19 19 H 1.08000 * 120.00060 * 155.95980 * 18 17 16 20 20 C 1.38815 * 120.00325 * 335.96322 * 18 17 16 21 21 N 1.31621 * 119.99609 * 344.51923 * 20 18 17 22 22 Si 1.86796 * 120.00364 * 164.52991 * 20 18 17 23 23 H 1.48505 * 109.47607 * 89.99417 * 22 20 18 24 24 H 1.48499 * 109.47258 * 209.99650 * 22 20 18 25 25 H 1.48504 * 109.47167 * 329.99576 * 22 20 18 26 26 C 1.47335 * 117.24777 * 42.74045 * 17 16 15 27 27 C 1.49974 * 117.69425 * 274.99765 * 14 13 12 28 28 C 1.53257 * 87.69273 * 25.08290 * 6 5 4 29 29 H 1.08999 * 109.47024 * 299.99478 * 1 2 3 30 30 H 1.09001 * 109.47618 * 59.99633 * 1 2 3 31 31 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47618 * 120.00367 * 2 1 3 33 33 H 1.08999 * 109.47024 * 240.00522 * 2 1 3 34 34 H 1.09001 * 112.83195 * 18.88744 * 4 3 2 35 35 H 1.09004 * 113.64529 * 334.92307 * 5 4 3 36 36 H 1.08992 * 113.64923 * 105.93116 * 5 4 3 37 37 H 1.08998 * 117.51497 * 349.84626 * 7 6 5 38 38 H 1.09001 * 117.51114 * 134.91057 * 7 6 5 39 39 H 0.96999 * 120.00549 * 359.97438 * 12 10 8 40 40 H 1.08994 * 109.47158 * 300.00221 * 13 12 10 41 41 H 1.08996 * 109.46736 * 59.99930 * 13 12 10 42 42 H 1.07995 * 118.17191 * 0.85837 * 15 14 13 43 43 H 1.09000 * 109.67236 * 229.48361 * 16 15 14 44 44 H 1.09002 * 109.38493 * 109.35067 * 16 15 14 45 45 H 0.97001 * 119.99671 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.77344 * 178.61936 * 26 17 16 47 47 H 1.09003 * 109.82599 * 57.84036 * 26 17 16 48 48 H 1.08999 * 109.31392 * 281.29149 * 27 14 13 49 49 H 1.09001 * 109.31168 * 40.72261 * 27 14 13 50 50 H 1.09001 * 113.64086 * 220.41965 * 28 6 5 51 51 H 1.08999 * 113.73078 * 89.43090 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 4.0019 2.0432 1.3052 6 6 4.9770 2.8343 0.4265 7 6 6.4949 2.7159 0.3460 8 6 5.8492 4.0252 0.8080 9 1 5.8764 4.8703 0.1202 10 6 5.9508 4.3733 2.2708 11 8 5.3515 3.7145 3.0940 12 7 6.7077 5.4168 2.6641 13 6 6.8069 5.7549 4.0861 14 6 7.7072 6.9514 4.2563 15 6 7.1513 8.1190 4.3161 16 6 7.9206 9.4010 4.4711 17 7 9.3212 9.0888 4.7905 18 6 10.0066 9.7870 5.7485 19 1 10.8536 9.3353 6.2436 20 6 9.6128 11.0752 6.0835 21 7 8.7961 11.7400 5.2939 22 14 10.2422 11.8655 7.6547 23 1 11.5060 12.5921 7.3717 24 1 9.2275 12.8196 8.1698 25 1 10.4934 10.8132 8.6720 26 6 9.9568 7.9933 4.0376 27 6 9.1845 6.7061 4.3385 28 6 3.9485 2.7263 -0.7045 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8932 -0.5137 -0.8900 34 1 3.9276 0.5459 -0.3243 35 1 3.2961 2.6708 1.8494 36 1 4.4878 1.3019 1.9395 37 1 6.9931 2.1067 1.1001 38 1 6.9467 2.6993 -0.6458 39 1 7.1873 5.9436 2.0058 40 1 5.8154 5.9877 4.4743 41 1 7.2216 4.9080 4.6328 42 1 6.0745 8.1747 4.2555 43 1 7.4869 9.9941 5.2762 44 1 7.8764 9.9644 3.5390 45 1 8.5207 12.6400 5.5282 46 1 10.9944 7.8829 4.3525 47 1 9.9163 8.2068 2.9695 48 1 9.4372 6.3598 5.3406 49 1 9.4636 5.9406 3.6144 50 1 4.3917 2.5325 -1.6813 51 1 3.2273 3.5433 -0.7211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001144167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:31 Heat of formation + Delta-G solvation = 2.379503 kcal Electronic energy + Delta-G solvation = -28076.968814 eV Core-core repulsion = 24171.877268 eV Total energy + Delta-G solvation = -3905.091546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.62560 -39.14195 -37.85835 -37.10855 -34.88865 -33.57537 -32.81980 -31.03201 -30.81077 -29.74712 -27.21601 -26.02987 -24.81334 -23.35500 -23.26997 -22.79438 -22.61727 -21.08788 -20.28575 -18.74440 -17.74146 -17.39920 -17.13761 -16.11211 -15.86735 -15.68139 -15.40235 -15.31809 -14.85270 -14.51738 -14.31450 -13.93420 -13.76856 -13.58647 -13.43028 -13.12919 -12.94950 -12.82985 -12.52713 -12.33787 -12.28319 -12.12470 -11.98463 -11.64159 -11.57659 -11.39900 -11.36716 -10.93396 -10.80315 -10.74196 -10.63182 -10.41733 -10.34004 -10.04826 -9.85729 -9.83763 -9.64527 -9.56442 -8.93550 -8.70160 -8.07560 -6.77074 -5.82293 -3.20995 2.47958 2.57462 3.26033 3.36553 3.43676 3.46062 3.50571 3.60101 4.13887 4.31912 4.47519 4.47735 4.54093 4.58347 4.70600 4.75669 4.93931 4.97290 5.02220 5.15139 5.27947 5.31552 5.34140 5.38092 5.39218 5.47074 5.55215 5.56346 5.58244 5.69257 5.73902 5.81148 5.82026 5.94146 5.99110 6.03339 6.05800 6.14978 6.31358 6.45617 6.54378 6.71044 6.84185 7.00021 7.14669 7.23458 7.30408 7.62456 7.70873 7.80134 8.29662 8.35505 9.16964 9.79757 10.37678 11.28236 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.001731 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.195408 B =16169.769122 C =16475.693836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.062 3.938 5 C -0.093 4.093 6 C -0.129 4.129 7 C -0.121 4.121 8 C -0.170 4.170 9 H 0.124 0.876 10 C 0.539 3.461 11 O -0.542 6.542 12 N -0.717 5.717 13 C 0.158 3.842 14 C -0.166 4.166 15 C -0.124 4.124 16 C 0.194 3.806 17 N -0.595 5.595 18 C -0.247 4.247 19 H 0.068 0.932 20 C -0.001 4.001 21 N -0.910 5.910 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.144 3.856 27 C -0.090 4.090 28 C -0.093 4.093 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.402 0.598 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.254 0.746 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 -21.756 -14.142 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.294 6.294 4 C 0.004 3.996 5 C -0.131 4.131 6 C -0.130 4.130 7 C -0.158 4.158 8 C -0.192 4.192 9 H 0.142 0.858 10 C 0.325 3.675 11 O -0.419 6.419 12 N -0.368 5.368 13 C 0.036 3.964 14 C -0.167 4.167 15 C -0.145 4.145 16 C 0.069 3.931 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C -0.130 4.130 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.804 -21.887 -13.474 27.881 hybrid contribution 0.682 0.671 0.519 1.088 sum -10.122 -21.217 -12.956 26.841 Atomic orbital electron populations 1.21751 0.93849 1.02170 1.03185 1.22496 0.95581 0.84073 0.99922 1.87954 1.20666 1.26170 1.94626 1.23618 0.80863 0.97560 0.97545 1.22859 0.96301 0.98319 0.95581 1.21819 0.91645 0.99583 0.99959 1.22825 0.93210 0.96909 1.02864 1.22145 1.07792 0.94212 0.95011 0.85765 1.19620 0.78731 0.80122 0.89066 1.90683 1.45580 1.51392 1.54252 1.46144 1.49368 1.31793 1.09459 1.20442 0.98780 0.96445 0.80762 1.20495 0.95535 0.93358 1.07332 1.23283 0.99284 0.96866 0.95058 1.19760 0.83365 0.89606 1.00380 1.44114 1.07833 1.37406 1.42438 1.19172 1.12305 0.94478 1.11649 0.91379 1.24986 1.00205 0.95722 0.98966 1.70007 1.38177 1.11370 1.35938 0.86259 0.77977 0.78971 0.83359 1.21418 1.21553 1.20530 1.20948 0.95355 0.87534 0.94430 1.20753 0.92086 0.99271 1.00771 1.22762 0.95992 0.98044 0.96231 0.91765 0.91908 0.91212 0.93361 0.93525 0.89515 0.88495 0.91087 0.87950 0.87464 0.76390 0.91739 0.91717 0.88799 0.88853 0.94141 0.93590 0.92458 0.95937 0.91786 0.92884 0.90696 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.15 0.38 -0.57 16 2 C 0.06 0.41 6.50 37.15 0.24 0.65 16 3 O -0.37 -3.77 10.35 -35.23 -0.36 -4.13 16 4 C 0.06 0.55 4.31 -25.81 -0.11 0.44 16 5 C -0.09 -1.00 6.30 -26.14 -0.16 -1.17 16 6 C -0.13 -1.23 2.88 -154.79 -0.45 -1.67 16 7 C -0.12 -0.99 10.24 -26.94 -0.28 -1.27 16 8 C -0.17 -1.70 6.19 -91.98 -0.57 -2.27 16 9 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 10 C 0.54 7.23 7.61 -10.98 -0.08 7.14 16 11 O -0.54 -9.07 15.14 5.56 0.08 -8.99 16 12 N -0.72 -9.30 5.55 -61.47 -0.34 -9.65 16 13 C 0.16 2.38 5.66 -5.19 -0.03 2.35 16 14 C -0.17 -2.83 5.23 -100.99 -0.53 -3.36 16 15 C -0.12 -2.34 9.47 -35.78 -0.34 -2.68 16 16 C 0.19 4.53 5.23 -5.10 -0.03 4.50 16 17 N -0.59 -14.66 3.01 -173.68 -0.52 -15.18 16 18 C -0.25 -6.70 9.71 -15.06 -0.15 -6.85 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 20 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 21 N -0.91 -25.97 11.08 55.49 0.61 -25.36 16 22 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.14 2.91 6.58 -3.53 -0.02 2.89 16 27 C -0.09 -1.54 5.95 -28.18 -0.17 -1.70 16 28 C -0.09 -0.77 7.93 -26.13 -0.21 -0.98 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.62 7.87 -51.93 -0.41 0.21 16 35 H 0.10 1.26 8.05 -51.93 -0.42 0.84 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 4.56 8.46 -40.82 -0.35 4.21 16 40 H 0.06 1.02 7.79 -51.93 -0.40 0.62 16 41 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 42 H 0.09 1.61 7.74 -52.49 -0.41 1.20 16 43 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 44 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 411.78 15.07 6.21 6.21 Total: -1.00 -31.32 411.78 -10.97 -42.29 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -9.04 Total: 2.91 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.58 Total: -4.65 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.25 Total: -50.19 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.28 Total: -13.12 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.32 -10.97 -42.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001144167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.670 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds