Wall clock time and date at job start Tue Mar 31 2020 19:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42904 * 109.47139 * 2 1 4 4 C 1.42898 * 114.00030 * 179.97438 * 3 2 1 5 5 C 1.53885 * 113.59296 * 247.66672 * 4 3 2 6 6 C 1.53257 * 86.88414 * 220.43044 * 5 4 3 7 7 C 1.52463 * 128.58075 * 245.05376 * 6 5 4 8 8 C 1.52463 * 128.58686 * 165.11177 * 6 5 4 9 9 H 1.08994 * 117.51262 * 225.04724 * 8 6 5 10 10 C 1.50707 * 117.50902 * 10.14583 * 8 6 5 11 11 O 1.21280 * 120.00336 * 0.02562 * 10 8 6 12 12 N 1.34776 * 119.99506 * 180.02562 * 10 8 6 13 13 C 1.46504 * 119.99815 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.47075 * 179.97438 * 13 12 10 15 15 C 1.29455 * 117.69330 * 94.73862 * 14 13 12 16 16 C 1.50317 * 123.65446 * 180.58533 * 15 14 13 17 17 N 1.47010 * 109.20115 * 349.50149 * 16 15 14 18 18 C 1.36932 * 121.37264 * 222.75922 * 17 16 15 19 19 H 1.08000 * 120.00060 * 155.95980 * 18 17 16 20 20 C 1.38815 * 120.00325 * 335.96322 * 18 17 16 21 21 N 1.31621 * 119.99609 * 344.51923 * 20 18 17 22 22 Si 1.86796 * 120.00364 * 164.52991 * 20 18 17 23 23 H 1.48505 * 109.47607 * 89.99417 * 22 20 18 24 24 H 1.48499 * 109.47258 * 209.99650 * 22 20 18 25 25 H 1.48504 * 109.47167 * 329.99576 * 22 20 18 26 26 C 1.47335 * 117.24777 * 42.74045 * 17 16 15 27 27 C 1.49974 * 117.69425 * 274.99765 * 14 13 12 28 28 C 1.53257 * 87.69273 * 25.08290 * 6 5 4 29 29 H 1.08999 * 109.47024 * 299.99478 * 1 2 3 30 30 H 1.09001 * 109.47618 * 59.99633 * 1 2 3 31 31 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47618 * 120.00367 * 2 1 3 33 33 H 1.08999 * 109.47024 * 240.00522 * 2 1 3 34 34 H 1.09001 * 112.83195 * 18.88744 * 4 3 2 35 35 H 1.09004 * 113.64529 * 334.92307 * 5 4 3 36 36 H 1.08992 * 113.64923 * 105.93116 * 5 4 3 37 37 H 1.08998 * 117.51497 * 349.84626 * 7 6 5 38 38 H 1.09001 * 117.51114 * 134.91057 * 7 6 5 39 39 H 0.96999 * 120.00549 * 359.97438 * 12 10 8 40 40 H 1.08994 * 109.47158 * 300.00221 * 13 12 10 41 41 H 1.08996 * 109.46736 * 59.99930 * 13 12 10 42 42 H 1.07995 * 118.17191 * 0.85837 * 15 14 13 43 43 H 1.09000 * 109.67236 * 229.48361 * 16 15 14 44 44 H 1.09002 * 109.38493 * 109.35067 * 16 15 14 45 45 H 0.97001 * 119.99671 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.77344 * 178.61936 * 26 17 16 47 47 H 1.09003 * 109.82599 * 57.84036 * 26 17 16 48 48 H 1.08999 * 109.31392 * 281.29149 * 27 14 13 49 49 H 1.09001 * 109.31168 * 40.72261 * 27 14 13 50 50 H 1.09001 * 113.64086 * 220.41965 * 28 6 5 51 51 H 1.08999 * 113.73078 * 89.43090 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 4.0019 2.0432 1.3052 6 6 4.9770 2.8343 0.4265 7 6 6.4949 2.7159 0.3460 8 6 5.8492 4.0252 0.8080 9 1 5.8764 4.8703 0.1202 10 6 5.9508 4.3733 2.2708 11 8 5.3515 3.7145 3.0940 12 7 6.7077 5.4168 2.6641 13 6 6.8069 5.7549 4.0861 14 6 7.7072 6.9514 4.2563 15 6 7.1513 8.1190 4.3161 16 6 7.9206 9.4010 4.4711 17 7 9.3212 9.0888 4.7905 18 6 10.0066 9.7870 5.7485 19 1 10.8536 9.3353 6.2436 20 6 9.6128 11.0752 6.0835 21 7 8.7961 11.7400 5.2939 22 14 10.2422 11.8655 7.6547 23 1 11.5060 12.5921 7.3717 24 1 9.2275 12.8196 8.1698 25 1 10.4934 10.8132 8.6720 26 6 9.9568 7.9933 4.0376 27 6 9.1845 6.7061 4.3385 28 6 3.9485 2.7263 -0.7045 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8932 -0.5137 -0.8900 34 1 3.9276 0.5459 -0.3243 35 1 3.2961 2.6708 1.8494 36 1 4.4878 1.3019 1.9395 37 1 6.9931 2.1067 1.1001 38 1 6.9467 2.6993 -0.6458 39 1 7.1873 5.9436 2.0058 40 1 5.8154 5.9877 4.4743 41 1 7.2216 4.9080 4.6328 42 1 6.0745 8.1747 4.2555 43 1 7.4869 9.9941 5.2762 44 1 7.8764 9.9644 3.5390 45 1 8.5207 12.6400 5.5282 46 1 10.9944 7.8829 4.3525 47 1 9.9163 8.2068 2.9695 48 1 9.4372 6.3598 5.3406 49 1 9.4636 5.9406 3.6144 50 1 4.3917 2.5325 -1.6813 51 1 3.2273 3.5433 -0.7211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001144167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:30 Heat of formation + Delta-G solvation = -15.820460 kcal Electronic energy + Delta-G solvation = -28077.758023 eV Core-core repulsion = 24171.877268 eV Total energy + Delta-G solvation = -3905.880755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48003 -40.13807 -39.28507 -37.93051 -36.35618 -34.57614 -34.17577 -32.59352 -31.54524 -31.42051 -28.76505 -26.76756 -26.34698 -24.66519 -24.16545 -23.83460 -23.41145 -22.72779 -21.27775 -19.60582 -19.40748 -18.41843 -17.89178 -17.38481 -17.09487 -16.84333 -16.57256 -16.28885 -16.11186 -15.77261 -15.51666 -15.22316 -15.01430 -14.97292 -14.63612 -14.27156 -13.97216 -13.78071 -13.64179 -13.60523 -13.27735 -13.12757 -12.98566 -12.92371 -12.79650 -12.70841 -12.58621 -12.25478 -12.22102 -12.11310 -11.99553 -11.71912 -11.49669 -11.34343 -11.28391 -10.91526 -10.71463 -10.67486 -10.32016 -10.08026 -9.65730 -8.75571 -7.89272 -5.30272 1.16540 1.46260 1.48262 1.51080 1.57379 2.33896 2.50722 2.66236 2.92905 3.28221 3.38171 3.61411 3.63447 3.77973 3.81427 3.85268 3.87084 3.95677 4.11326 4.15673 4.21312 4.40892 4.42363 4.51237 4.52153 4.60203 4.67171 4.73339 4.74294 4.83122 4.83245 4.84454 4.88893 4.90956 5.01840 5.04872 5.09444 5.10378 5.19627 5.20284 5.25285 5.33473 5.36430 5.43212 5.47049 5.60798 5.75660 6.14975 6.33174 6.38110 6.59191 7.12792 7.26371 7.82934 8.36639 9.19377 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.001731 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.195408 B =16169.769122 C =16475.693836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.399 6.399 4 C 0.067 3.933 5 C -0.103 4.103 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.180 4.180 9 H 0.147 0.853 10 C 0.535 3.465 11 O -0.580 6.580 12 N -0.710 5.710 13 C 0.169 3.831 14 C -0.138 4.138 15 C -0.143 4.143 16 C 0.205 3.795 17 N -0.615 5.615 18 C -0.258 4.258 19 H 0.070 0.930 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.967 3.033 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.139 3.861 27 C -0.083 4.083 28 C -0.084 4.084 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.413 0.587 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.015 0.985 45 H 0.250 0.750 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 -24.034 -15.825 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.319 6.319 4 C 0.009 3.991 5 C -0.141 4.141 6 C -0.138 4.138 7 C -0.135 4.135 8 C -0.201 4.201 9 H 0.165 0.835 10 C 0.323 3.677 11 O -0.461 6.461 12 N -0.361 5.361 13 C 0.045 3.955 14 C -0.139 4.139 15 C -0.163 4.163 16 C 0.080 3.920 17 N -0.339 5.339 18 C -0.388 4.388 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.586 5.586 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.013 3.987 27 C -0.122 4.122 28 C -0.121 4.121 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.158 0.842 39 H 0.249 0.751 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.108 0.892 50 H 0.119 0.881 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.981 -24.187 -15.184 30.252 hybrid contribution 0.448 1.286 1.046 1.717 sum -9.533 -22.901 -14.138 28.552 Atomic orbital electron populations 1.21776 0.93294 1.03297 1.02493 1.22695 0.96158 0.83133 1.00785 1.87933 1.21391 1.27881 1.94656 1.23684 0.80566 0.98739 0.96094 1.22801 0.96637 0.98229 0.96401 1.21921 0.92647 0.99296 0.99889 1.22960 0.91866 0.94545 1.04122 1.22191 1.09315 0.95754 0.92812 0.83513 1.20229 0.77669 0.79337 0.90416 1.90676 1.47020 1.52651 1.55709 1.45998 1.49493 1.31947 1.08646 1.20184 0.97761 0.95268 0.82255 1.20610 0.95893 0.93310 1.04055 1.22938 0.99687 0.95510 0.98196 1.19393 0.83537 0.91262 0.97785 1.44390 1.08470 1.38204 1.42804 1.19513 1.12293 0.94783 1.12222 0.91185 1.25731 1.00951 0.96435 1.01723 1.70165 1.39613 1.11383 1.37429 0.85273 0.77207 0.77958 0.80003 1.21004 1.22013 1.19746 1.21144 0.95823 0.87453 0.94245 1.20691 0.91396 0.98375 1.01729 1.22702 0.95232 0.97223 0.96962 0.92969 0.92060 0.89192 0.93284 0.91774 0.87392 0.91747 0.92188 0.88601 0.84183 0.75098 0.92540 0.91531 0.87243 0.92549 0.96774 0.94126 0.92182 0.95285 0.91953 0.89242 0.88053 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.05 0.66 6.50 71.98 0.47 1.12 16 3 O -0.40 -7.76 10.35 -148.98 -1.54 -9.30 16 4 C 0.07 1.08 4.31 31.19 0.13 1.22 16 5 C -0.10 -2.22 6.30 30.98 0.20 -2.02 16 6 C -0.14 -2.33 2.88 -52.37 -0.15 -2.48 16 7 C -0.10 -1.27 10.24 30.46 0.31 -0.96 16 8 C -0.18 -3.15 6.19 -11.67 -0.07 -3.22 16 9 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 10 C 0.54 13.59 7.61 87.66 0.67 14.26 16 11 O -0.58 -19.34 15.14 -3.03 -0.05 -19.38 16 12 N -0.71 -16.92 5.55 -466.79 -2.59 -19.51 16 13 C 0.17 4.79 5.66 85.63 0.48 5.27 16 14 C -0.14 -4.47 5.23 -15.14 -0.08 -4.55 16 15 C -0.14 -5.36 9.47 27.10 0.26 -5.11 16 16 C 0.21 9.90 5.23 85.42 0.45 10.35 16 17 N -0.61 -30.59 3.01 -703.39 -2.12 -32.70 16 18 C -0.26 -14.16 9.71 84.03 0.82 -13.35 16 19 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 20 C -0.05 -2.99 5.01 84.86 0.43 -2.57 16 21 N -0.94 -55.34 11.08 21.65 0.24 -55.10 16 22 Si 0.97 45.00 29.58 68.60 2.03 47.03 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.14 5.44 6.58 86.25 0.57 6.01 16 27 C -0.08 -2.65 5.95 29.65 0.18 -2.47 16 28 C -0.08 -1.20 7.93 30.98 0.25 -0.95 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 1.27 7.87 -2.39 -0.02 1.25 16 35 H 0.06 1.78 8.05 -2.38 -0.02 1.76 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.41 8.18 8.46 -92.71 -0.78 7.40 16 40 H 0.06 1.73 7.79 -2.39 -0.02 1.71 16 41 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 42 H 0.11 3.73 7.74 -2.91 -0.02 3.71 16 43 H 0.06 3.10 6.41 -2.39 -0.02 3.08 16 44 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.06 2.29 7.96 -2.39 -0.02 2.27 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.35 411.78 1.72 -68.62 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.12 Total: 20.81 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 5.63 Total: -0.47 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -4.47 Total: -107.31 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.59 Total: -28.68 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.35 1.72 -68.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001144167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds