Wall clock time and date at job start Tue Mar 31 2020 19:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42891 * 109.47396 * 2 1 4 4 C 1.42903 * 114.00685 * 179.97438 * 3 2 1 5 5 C 1.53878 * 113.59299 * 210.00085 * 4 3 2 6 6 C 1.53253 * 86.88586 * 220.42749 * 5 4 3 7 7 C 1.52462 * 128.58285 * 245.06111 * 6 5 4 8 8 C 1.52463 * 128.58893 * 165.11025 * 6 5 4 9 9 H 1.08995 * 117.54779 * 225.02931 * 8 6 5 10 10 C 1.50692 * 117.51203 * 10.15523 * 8 6 5 11 11 O 1.21285 * 120.00371 * 359.84617 * 10 8 6 12 12 N 1.34781 * 120.00183 * 179.85297 * 10 8 6 13 13 C 1.46772 * 125.33795 * 179.97438 * 12 10 8 14 14 C 1.53967 * 106.62414 * 198.51536 * 13 12 10 15 15 H 1.09001 * 113.01437 * 94.28915 * 14 13 12 16 16 C 1.53939 * 109.25290 * 221.81392 * 14 13 12 17 17 N 1.46745 * 106.71588 * 81.63794 * 16 14 13 18 18 C 1.36936 * 125.32714 * 198.36101 * 17 16 14 19 19 H 1.08000 * 120.00020 * 169.97766 * 18 17 16 20 20 C 1.38814 * 119.99972 * 349.97919 * 18 17 16 21 21 N 1.31621 * 120.00130 * 350.55467 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 170.55339 * 20 18 17 23 23 H 1.48503 * 109.46662 * 94.63231 * 22 20 18 24 24 H 1.48496 * 109.47186 * 214.62939 * 22 20 18 25 25 H 1.48500 * 109.47340 * 334.63311 * 22 20 18 26 26 C 1.46640 * 109.34508 * 18.34192 * 17 16 14 27 27 C 1.53698 * 108.00669 * 359.16089 * 26 17 16 28 28 H 1.08994 * 112.55606 * 105.90932 * 27 26 17 29 29 C 1.46668 * 125.33598 * 359.97438 * 12 10 8 30 30 C 1.53260 * 87.69336 * 25.08046 * 6 5 4 31 31 H 1.09004 * 109.46511 * 60.00374 * 1 2 3 32 32 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47050 * 300.00006 * 1 2 3 34 34 H 1.09001 * 109.47309 * 239.99532 * 2 1 3 35 35 H 1.08996 * 109.47008 * 120.00028 * 2 1 3 36 36 H 1.09005 * 112.82544 * 341.12021 * 4 3 2 37 37 H 1.08998 * 113.64989 * 105.92720 * 5 4 3 38 38 H 1.09005 * 113.72521 * 334.93391 * 5 4 3 39 39 H 1.08999 * 117.51525 * 134.94403 * 7 6 5 40 40 H 1.08997 * 117.51156 * 349.83644 * 7 6 5 41 41 H 1.09005 * 110.02179 * 79.23000 * 13 12 10 42 42 H 1.08997 * 110.03209 * 317.81006 * 13 12 10 43 43 H 1.08995 * 110.00921 * 200.95504 * 16 14 13 44 44 H 1.09000 * 110.00880 * 322.32656 * 16 14 13 45 45 H 0.96997 * 119.99714 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.76251 * 239.51909 * 26 17 16 47 47 H 1.08996 * 109.75929 * 118.79760 * 26 17 16 48 48 H 1.09000 * 109.77586 * 59.82911 * 29 12 10 49 49 H 1.09009 * 109.78681 * 299.08262 * 29 12 10 50 50 H 1.09003 * 113.64657 * 89.41420 * 30 6 5 51 51 H 1.08999 * 113.65037 * 220.42054 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.9481 2.7263 0.7057 6 6 4.9774 2.8341 -0.4245 7 6 6.4953 2.7157 -0.3428 8 6 5.8499 4.0249 -0.8058 9 1 5.9249 4.2767 -1.8636 10 6 5.8868 5.1935 0.1449 11 8 5.2352 5.1643 1.1675 12 7 6.6438 6.2713 -0.1411 13 6 6.7658 7.4697 0.6975 14 6 7.3213 8.5853 -0.2067 15 1 6.5406 9.2080 -0.6437 16 6 8.3851 9.3840 0.5679 17 7 9.6338 8.6180 0.4815 18 6 10.7165 8.7730 1.3056 19 1 11.5266 8.0595 1.2728 20 6 10.7727 9.8472 2.1830 21 7 9.8843 10.8145 2.0970 22 14 12.1093 9.9198 3.4860 23 1 13.2522 10.7208 2.9786 24 1 11.5682 10.5530 4.7154 25 1 12.5701 8.5434 3.7998 26 6 9.5407 7.6603 -0.6250 27 6 8.1517 7.8088 -1.2662 28 1 8.1880 8.3181 -2.2291 29 6 7.4748 6.4305 -1.3391 30 6 4.0031 2.0427 -1.3038 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.9275 0.5459 0.3260 37 1 4.3905 2.5328 1.6829 38 1 3.2283 3.5448 0.7210 39 1 6.9941 2.1062 -1.0962 40 1 6.9463 2.7001 0.6494 41 1 7.4536 7.2801 1.5216 42 1 5.7879 7.7555 1.0849 43 1 8.5179 10.3661 0.1142 44 1 8.0850 9.4917 1.6103 45 1 9.9234 11.5649 2.7104 46 1 9.6651 6.6460 -0.2460 47 1 10.3125 7.8749 -1.3640 48 1 6.8510 6.3729 -2.2310 49 1 8.2334 5.6482 -1.3686 50 1 3.2976 2.6701 -1.8487 51 1 4.4894 1.3012 -1.9376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049055488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:23 Heat of formation + Delta-G solvation = -0.012302 kcal Electronic energy + Delta-G solvation = -29168.202536 eV Core-core repulsion = 25263.007274 eV Total energy + Delta-G solvation = -3905.195262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.64542 -39.66841 -38.23646 -36.95627 -34.92943 -33.46469 -32.21946 -30.93437 -30.16398 -29.66090 -26.12722 -25.91933 -25.47234 -23.91592 -23.21702 -22.81095 -22.20628 -20.15099 -19.40365 -19.30099 -18.26849 -17.35553 -17.11565 -16.63261 -15.93528 -15.71474 -15.55287 -15.17999 -14.68430 -14.59561 -14.28143 -13.86729 -13.70629 -13.35574 -13.09507 -13.04235 -12.70202 -12.65680 -12.47202 -12.25248 -12.04648 -11.94468 -11.88457 -11.59023 -11.55426 -11.46537 -11.33113 -10.87723 -10.82946 -10.74834 -10.48032 -10.39798 -10.11216 -10.03216 -9.96958 -9.91059 -9.71933 -9.63726 -9.47816 -8.59679 -8.31982 -6.81839 -5.77363 -3.10198 2.61830 3.11829 3.38658 3.42082 3.44941 3.46827 3.70533 4.14880 4.41321 4.47302 4.51620 4.62710 4.64790 4.74133 4.76342 4.80720 4.88735 5.00697 5.05338 5.14612 5.18108 5.31667 5.40385 5.46001 5.48770 5.51221 5.54302 5.58150 5.64964 5.68906 5.76755 5.77743 5.79982 5.81727 5.91068 5.92788 6.07696 6.11101 6.18536 6.30348 6.37711 6.55165 6.66606 6.72349 6.81001 7.05933 7.41886 7.55499 7.75225 7.79172 8.24109 8.39256 9.18221 9.79725 10.44837 11.35586 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002157 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.954193 B =12978.381464 C =13231.077419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.062 3.938 5 C -0.075 4.075 6 C -0.130 4.130 7 C -0.120 4.120 8 C -0.164 4.164 9 H 0.122 0.878 10 C 0.554 3.446 11 O -0.540 6.540 12 N -0.607 5.607 13 C 0.119 3.881 14 C -0.123 4.123 15 H 0.088 0.912 16 C 0.186 3.814 17 N -0.599 5.599 18 C -0.231 4.231 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.143 3.857 27 C -0.109 4.109 28 H 0.096 0.904 29 C 0.113 3.887 30 C -0.111 4.111 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.062 0.938 45 H 0.253 0.747 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.094 0.906 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.402 -19.497 -9.869 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.005 3.995 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.157 4.157 8 C -0.185 4.185 9 H 0.140 0.860 10 C 0.342 3.658 11 O -0.418 6.418 12 N -0.339 5.339 13 C -0.002 4.002 14 C -0.143 4.143 15 H 0.106 0.894 16 C 0.061 3.939 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.017 3.983 27 C -0.128 4.128 28 H 0.114 0.886 29 C -0.010 4.010 30 C -0.148 4.148 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.113 0.887 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.845 -19.270 -9.128 25.423 hybrid contribution 1.070 0.048 0.465 1.167 sum -12.775 -19.221 -8.663 24.652 Atomic orbital electron populations 1.21750 0.93892 1.02109 1.03197 1.22495 0.95566 0.84212 0.99865 1.87973 1.20759 1.26009 1.94579 1.23636 0.80708 0.98320 0.96874 1.22577 0.95602 0.96534 0.96535 1.21817 0.91712 0.99080 1.00450 1.22828 0.93085 0.96492 1.03342 1.22085 1.07643 0.88946 0.99840 0.86006 1.19192 0.78657 0.81939 0.85995 1.90686 1.43663 1.80434 1.27013 1.48256 1.45053 1.17395 1.23233 1.22036 1.00946 0.83144 0.94115 1.23266 0.98480 0.96584 0.96003 0.89393 1.20988 0.82468 0.92173 0.98310 1.44179 1.13830 1.41457 1.33057 1.18986 0.97118 1.06752 1.13097 0.90626 1.24826 0.98917 0.95951 1.00538 1.69954 1.37146 1.10225 1.39078 0.86135 0.80949 0.77529 0.81340 1.21594 1.21581 1.20614 1.21205 0.92770 0.93890 0.90390 1.22749 0.96598 0.93897 0.99551 0.88592 1.21899 0.93637 0.98188 0.87282 1.23045 0.96728 0.98489 0.96580 0.91883 0.91257 0.91801 0.93535 0.93453 0.89488 0.90699 0.88419 0.87534 0.87849 0.90523 0.91537 0.94500 0.92015 0.93636 0.95885 0.95894 0.92089 0.91283 0.88736 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.43 6.50 37.16 0.24 0.67 16 3 O -0.37 -4.02 10.35 -35.23 -0.36 -4.38 16 4 C 0.06 0.61 4.31 -25.81 -0.11 0.50 16 5 C -0.08 -0.91 6.30 -26.14 -0.16 -1.07 16 6 C -0.13 -1.41 2.88 -154.80 -0.45 -1.86 16 7 C -0.12 -1.21 10.24 -26.94 -0.28 -1.49 16 8 C -0.16 -1.95 5.53 -91.98 -0.51 -2.46 16 9 H 0.12 1.21 7.65 -51.93 -0.40 0.82 16 10 C 0.55 8.88 7.62 -10.99 -0.08 8.80 16 11 O -0.54 -10.39 15.42 5.55 0.09 -10.31 16 12 N -0.61 -9.75 3.31 -172.29 -0.57 -10.32 16 13 C 0.12 2.19 6.11 -3.39 -0.02 2.17 16 14 C -0.12 -2.20 4.17 -88.35 -0.37 -2.57 16 15 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 16 C 0.19 4.33 4.52 -3.42 -0.02 4.31 16 17 N -0.60 -14.84 3.37 -171.93 -0.58 -15.42 16 18 C -0.23 -6.36 10.21 -15.06 -0.15 -6.51 16 19 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 21 N -0.92 -26.59 10.62 55.49 0.59 -26.00 16 22 Si 0.91 22.01 29.56 -169.99 -5.03 16.99 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.14 2.84 6.60 -3.60 -0.02 2.82 16 27 C -0.11 -1.73 4.02 -88.60 -0.36 -2.08 16 28 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 29 C 0.11 1.53 5.67 -3.58 -0.02 1.51 16 30 C -0.11 -1.01 7.93 -26.13 -0.21 -1.22 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.64 7.71 -51.93 -0.40 1.24 16 42 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.04 0.94 7.80 -51.93 -0.40 0.54 16 44 H 0.06 1.61 7.03 -51.93 -0.37 1.25 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.02 0.46 7.29 -51.93 -0.38 0.08 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 49 H 0.07 0.88 7.44 -51.92 -0.39 0.49 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 401.13 15.07 6.04 6.04 Total: -1.00 -32.12 401.13 -11.08 -43.20 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -9.04 Total: -0.45 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.22 Total: 0.65 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.56 Total: -51.74 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.28 Total: -14.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.12 -11.08 -43.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049055488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.192 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds