Wall clock time and date at job start Tue Mar 31 2020 19:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42891 * 109.47396 * 2 1 4 4 C 1.42903 * 114.00685 * 179.97438 * 3 2 1 5 5 C 1.53878 * 113.59299 * 210.00085 * 4 3 2 6 6 C 1.53253 * 86.88586 * 220.42749 * 5 4 3 7 7 C 1.52462 * 128.58285 * 245.06111 * 6 5 4 8 8 C 1.52463 * 128.58893 * 165.11025 * 6 5 4 9 9 H 1.08995 * 117.54779 * 225.02931 * 8 6 5 10 10 C 1.50692 * 117.51203 * 10.15523 * 8 6 5 11 11 O 1.21285 * 120.00371 * 359.84617 * 10 8 6 12 12 N 1.34781 * 120.00183 * 179.85297 * 10 8 6 13 13 C 1.46772 * 125.33795 * 179.97438 * 12 10 8 14 14 C 1.53967 * 106.62414 * 198.51536 * 13 12 10 15 15 H 1.09001 * 113.01437 * 94.28915 * 14 13 12 16 16 C 1.53939 * 109.25290 * 221.81392 * 14 13 12 17 17 N 1.46745 * 106.71588 * 81.63794 * 16 14 13 18 18 C 1.36936 * 125.32714 * 198.36101 * 17 16 14 19 19 H 1.08000 * 120.00020 * 169.97766 * 18 17 16 20 20 C 1.38814 * 119.99972 * 349.97919 * 18 17 16 21 21 N 1.31621 * 120.00130 * 350.55467 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 170.55339 * 20 18 17 23 23 H 1.48503 * 109.46662 * 94.63231 * 22 20 18 24 24 H 1.48496 * 109.47186 * 214.62939 * 22 20 18 25 25 H 1.48500 * 109.47340 * 334.63311 * 22 20 18 26 26 C 1.46640 * 109.34508 * 18.34192 * 17 16 14 27 27 C 1.53698 * 108.00669 * 359.16089 * 26 17 16 28 28 H 1.08994 * 112.55606 * 105.90932 * 27 26 17 29 29 C 1.46668 * 125.33598 * 359.97438 * 12 10 8 30 30 C 1.53260 * 87.69336 * 25.08046 * 6 5 4 31 31 H 1.09004 * 109.46511 * 60.00374 * 1 2 3 32 32 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47050 * 300.00006 * 1 2 3 34 34 H 1.09001 * 109.47309 * 239.99532 * 2 1 3 35 35 H 1.08996 * 109.47008 * 120.00028 * 2 1 3 36 36 H 1.09005 * 112.82544 * 341.12021 * 4 3 2 37 37 H 1.08998 * 113.64989 * 105.92720 * 5 4 3 38 38 H 1.09005 * 113.72521 * 334.93391 * 5 4 3 39 39 H 1.08999 * 117.51525 * 134.94403 * 7 6 5 40 40 H 1.08997 * 117.51156 * 349.83644 * 7 6 5 41 41 H 1.09005 * 110.02179 * 79.23000 * 13 12 10 42 42 H 1.08997 * 110.03209 * 317.81006 * 13 12 10 43 43 H 1.08995 * 110.00921 * 200.95504 * 16 14 13 44 44 H 1.09000 * 110.00880 * 322.32656 * 16 14 13 45 45 H 0.96997 * 119.99714 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.76251 * 239.51909 * 26 17 16 47 47 H 1.08996 * 109.75929 * 118.79760 * 26 17 16 48 48 H 1.09000 * 109.77586 * 59.82911 * 29 12 10 49 49 H 1.09009 * 109.78681 * 299.08262 * 29 12 10 50 50 H 1.09003 * 113.64657 * 89.41420 * 30 6 5 51 51 H 1.08999 * 113.65037 * 220.42054 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.9481 2.7263 0.7057 6 6 4.9774 2.8341 -0.4245 7 6 6.4953 2.7157 -0.3428 8 6 5.8499 4.0249 -0.8058 9 1 5.9249 4.2767 -1.8636 10 6 5.8868 5.1935 0.1449 11 8 5.2352 5.1643 1.1675 12 7 6.6438 6.2713 -0.1411 13 6 6.7658 7.4697 0.6975 14 6 7.3213 8.5853 -0.2067 15 1 6.5406 9.2080 -0.6437 16 6 8.3851 9.3840 0.5679 17 7 9.6338 8.6180 0.4815 18 6 10.7165 8.7730 1.3056 19 1 11.5266 8.0595 1.2728 20 6 10.7727 9.8472 2.1830 21 7 9.8843 10.8145 2.0970 22 14 12.1093 9.9198 3.4860 23 1 13.2522 10.7208 2.9786 24 1 11.5682 10.5530 4.7154 25 1 12.5701 8.5434 3.7998 26 6 9.5407 7.6603 -0.6250 27 6 8.1517 7.8088 -1.2662 28 1 8.1880 8.3181 -2.2291 29 6 7.4748 6.4305 -1.3391 30 6 4.0031 2.0427 -1.3038 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.9275 0.5459 0.3260 37 1 4.3905 2.5328 1.6829 38 1 3.2283 3.5448 0.7210 39 1 6.9941 2.1062 -1.0962 40 1 6.9463 2.7001 0.6494 41 1 7.4536 7.2801 1.5216 42 1 5.7879 7.7555 1.0849 43 1 8.5179 10.3661 0.1142 44 1 8.0850 9.4917 1.6103 45 1 9.9234 11.5649 2.7104 46 1 9.6651 6.6460 -0.2460 47 1 10.3125 7.8749 -1.3640 48 1 6.8510 6.3729 -2.2310 49 1 8.2334 5.6482 -1.3686 50 1 3.2976 2.6701 -1.8487 51 1 4.4894 1.3012 -1.9376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049055488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:21 Heat of formation + Delta-G solvation = -19.097499 kcal Electronic energy + Delta-G solvation = -29169.030132 eV Core-core repulsion = 25263.007274 eV Total energy + Delta-G solvation = -3906.022858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76604 -40.79578 -39.42272 -37.86597 -36.57083 -34.36815 -33.97381 -31.81665 -31.45702 -31.31333 -27.72271 -27.10970 -26.74983 -25.34357 -23.84051 -23.73135 -23.26883 -21.88684 -20.86310 -20.38470 -19.28558 -18.82348 -18.22494 -17.84606 -17.12665 -16.72894 -16.63773 -16.38675 -16.23726 -15.89392 -15.58300 -15.01488 -14.87361 -14.54409 -14.39304 -14.14671 -13.86007 -13.76487 -13.63804 -13.40613 -13.19460 -13.18869 -13.10043 -12.92347 -12.76072 -12.69979 -12.67604 -12.22298 -12.02752 -11.98815 -11.89438 -11.74861 -11.59733 -11.52955 -11.49878 -11.27691 -10.91446 -10.69933 -10.61569 -10.32424 -9.62868 -8.84730 -7.90186 -5.23986 1.43277 1.45272 1.46933 1.54208 1.93903 2.47525 2.63333 2.92585 3.22702 3.28384 3.42967 3.58846 3.64373 3.73135 3.76305 3.84766 3.85326 3.93982 4.05008 4.14441 4.23126 4.24985 4.28174 4.42105 4.50357 4.53339 4.58196 4.62401 4.74202 4.78101 4.81087 4.84692 4.84995 4.89513 4.95622 5.00220 5.02697 5.05180 5.10006 5.16887 5.19262 5.25754 5.26776 5.33920 5.36264 5.46794 5.53732 5.71685 6.20157 6.39725 6.56304 7.08645 7.15087 7.77922 8.40763 9.21508 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002157 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.954193 B =12978.381464 C =13231.077419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.400 6.400 4 C 0.069 3.931 5 C -0.090 4.090 6 C -0.133 4.133 7 C -0.103 4.103 8 C -0.170 4.170 9 H 0.154 0.846 10 C 0.545 3.455 11 O -0.585 6.585 12 N -0.609 5.609 13 C 0.128 3.872 14 C -0.110 4.110 15 H 0.115 0.885 16 C 0.196 3.804 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.078 0.922 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.974 3.026 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.137 3.863 27 C -0.094 4.094 28 H 0.129 0.871 29 C 0.116 3.884 30 C -0.095 4.095 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.145 0.855 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.058 0.942 43 H 0.008 0.992 44 H 0.018 0.982 45 H 0.248 0.752 46 H 0.023 0.977 47 H 0.030 0.970 48 H 0.105 0.895 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -22.388 -13.074 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.320 6.320 4 C 0.011 3.989 5 C -0.128 4.128 6 C -0.134 4.134 7 C -0.140 4.140 8 C -0.191 4.191 9 H 0.172 0.828 10 C 0.336 3.664 11 O -0.466 6.466 12 N -0.341 5.341 13 C 0.005 3.995 14 C -0.130 4.130 15 H 0.133 0.867 16 C 0.070 3.930 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.096 0.904 20 C -0.257 4.257 21 N -0.595 5.595 22 Si 0.802 3.198 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.196 1.196 26 C 0.012 3.988 27 C -0.113 4.113 28 H 0.147 0.853 29 C -0.006 4.006 30 C -0.132 4.132 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.163 0.837 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.026 0.974 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.048 0.952 48 H 0.123 0.877 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.646 -22.197 -12.380 28.848 hybrid contribution 0.995 0.932 1.546 2.061 sum -12.651 -21.265 -10.835 27.012 Atomic orbital electron populations 1.21780 0.93373 1.03303 1.02440 1.22714 0.96097 0.83025 1.00976 1.87947 1.21282 1.28044 1.94713 1.23643 0.80643 0.97725 0.96879 1.22558 0.96162 0.97329 0.96760 1.21924 0.92312 0.98954 1.00175 1.22957 0.92374 0.95180 1.03504 1.22140 1.09281 0.87551 1.00102 0.82821 1.20069 0.77574 0.82651 0.86145 1.90671 1.45416 1.81271 1.29240 1.48351 1.45486 1.16602 1.23650 1.21664 0.99367 0.84812 0.93691 1.23084 0.97802 0.96102 0.96015 0.86694 1.20687 0.83884 0.91984 0.96435 1.44470 1.13574 1.42316 1.34368 1.19355 0.97848 1.06471 1.13547 0.90387 1.25634 1.01340 0.96011 1.02706 1.70149 1.38892 1.10675 1.39757 0.85142 0.78471 0.77736 0.78467 1.20960 1.22216 1.19614 1.21442 0.95687 0.92439 0.89205 1.22797 0.93486 0.95396 0.99645 0.85283 1.22075 0.94268 0.96774 0.87460 1.22951 0.95747 0.98390 0.96116 0.92282 0.89088 0.92915 0.91857 0.92794 0.87549 0.92510 0.91527 0.83701 0.89597 0.94783 0.92309 0.97403 0.96311 0.94309 0.95875 0.95234 0.87697 0.89652 0.89292 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.65 6.50 71.98 0.47 1.12 16 3 O -0.40 -8.21 10.35 -148.98 -1.54 -9.75 16 4 C 0.07 1.23 4.31 31.19 0.13 1.36 16 5 C -0.09 -2.23 6.30 30.98 0.20 -2.03 16 6 C -0.13 -2.59 2.88 -52.37 -0.15 -2.74 16 7 C -0.10 -1.74 10.24 30.46 0.31 -1.43 16 8 C -0.17 -3.52 5.53 -11.68 -0.06 -3.59 16 9 H 0.15 2.21 7.65 -2.39 -0.02 2.20 16 10 C 0.54 17.05 7.62 87.65 0.67 17.71 16 11 O -0.59 -23.38 15.42 -3.05 -0.05 -23.42 16 12 N -0.61 -18.71 3.31 -817.39 -2.71 -21.41 16 13 C 0.13 4.80 6.11 86.65 0.53 5.33 16 14 C -0.11 -3.88 4.17 -9.32 -0.04 -3.92 16 15 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 16 C 0.20 9.49 4.52 86.65 0.39 9.88 16 17 N -0.62 -31.44 3.37 -697.85 -2.35 -33.79 16 18 C -0.24 -13.68 10.21 84.03 0.86 -12.83 16 19 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 20 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 21 N -0.95 -57.33 10.62 21.65 0.23 -57.10 16 22 Si 0.97 46.42 29.56 68.60 2.03 48.44 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 C 0.14 5.25 6.60 86.59 0.57 5.82 16 27 C -0.09 -2.71 4.02 -9.49 -0.04 -2.75 16 28 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 29 C 0.12 2.66 5.67 86.59 0.49 3.15 16 30 C -0.09 -1.41 7.93 30.98 0.25 -1.17 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 1.46 7.87 -2.38 -0.02 1.44 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 2.02 8.05 -2.38 -0.02 2.00 16 39 H 0.15 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.03 1.55 7.71 -2.38 -0.02 1.53 16 42 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 43 H 0.01 0.43 7.80 -2.39 -0.02 0.41 16 44 H 0.02 1.04 7.03 -2.39 -0.02 1.03 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.02 0.89 7.29 -2.39 -0.02 0.88 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.11 1.63 7.96 -2.39 -0.02 1.61 16 49 H 0.09 1.76 7.44 -2.38 -0.02 1.74 16 50 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -76.31 401.13 2.27 -74.04 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.89 Total: 13.30 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.77 Total: 9.69 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -4.83 Total: -112.31 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.59 Total: -33.18 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -76.31 2.27 -74.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049055488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.946 kcal (2) G-P(sol) polarization free energy of solvation -76.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds