Wall clock time and date at job start Tue Mar 31 2020 19:22:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42905 * 109.46728 * 2 1
4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1
5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2
6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3
7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4
8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5
9 9 C 1.53002 * 109.46527 * 270.01931 * 8 7 6
10 10 N 1.46498 * 109.47099 * 179.97438 * 9 8 7
11 11 C 1.46495 * 120.00207 * 270.00118 * 10 9 8
12 12 C 1.34783 * 120.00166 * 89.99587 * 10 9 8
13 13 O 1.21283 * 119.99709 * 0.02562 * 12 10 9
14 14 C 1.50698 * 119.99836 * 180.02562 * 12 10 9
15 15 H 1.09004 * 109.47347 * 40.00402 * 14 12 10
16 16 N 1.46899 * 109.46913 * 160.00156 * 14 12 10
17 17 C 1.52994 * 109.47164 * 279.99851 * 14 12 10
18 18 C 1.53010 * 109.47028 * 175.00253 * 17 14 12
19 19 C 1.50703 * 109.46951 * 180.02562 * 18 17 14
20 20 H 1.08000 * 119.99706 * 0.02562 * 19 18 17
21 21 C 1.37876 * 119.99923 * 179.97438 * 19 18 17
22 22 N 1.31520 * 119.99962 * 0.02562 * 21 19 18
23 23 Si 1.86793 * 120.00017 * 180.02562 * 21 19 18
24 24 H 1.48494 * 109.47293 * 59.99993 * 23 21 19
25 25 H 1.48497 * 109.47054 * 180.02562 * 23 21 19
26 26 H 1.48505 * 109.47295 * 300.00098 * 23 21 19
27 27 C 1.38262 * 120.11048 * 359.76434 * 7 6 5
28 28 C 1.38145 * 120.05942 * 359.97438 * 27 7 6
29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3
30 30 H 1.09001 * 109.47362 * 60.00784 * 1 2 3
31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47486 * 239.99938 * 2 1 3
33 33 H 1.09001 * 109.47362 * 119.99215 * 2 1 3
34 34 H 1.07995 * 120.02746 * 359.97438 * 5 4 3
35 35 H 1.08004 * 119.97067 * 180.22662 * 6 5 4
36 36 H 1.08992 * 109.47037 * 30.01395 * 8 7 6
37 37 H 1.08998 * 109.46989 * 150.02347 * 8 7 6
38 38 H 1.09004 * 109.47165 * 299.99904 * 9 8 7
39 39 H 1.08993 * 109.47678 * 59.99781 * 9 8 7
40 40 H 1.09001 * 109.47173 * 89.99550 * 11 10 9
41 41 H 1.08996 * 109.47444 * 209.99848 * 11 10 9
42 42 H 1.08999 * 109.47087 * 329.99730 * 11 10 9
43 43 H 1.00907 * 111.00229 * 60.00081 * 16 14 12
44 44 H 1.00897 * 111.00550 * 183.95319 * 16 14 12
45 45 H 1.08996 * 109.47509 * 295.00091 * 17 14 12
46 46 H 1.09002 * 109.47421 * 55.00677 * 17 14 12
47 47 H 1.08996 * 109.46844 * 300.00246 * 18 17 14
48 48 H 1.08999 * 109.46726 * 60.00485 * 18 17 14
49 49 H 0.96995 * 119.99671 * 179.97438 * 22 21 19
50 50 H 1.08008 * 119.97547 * 179.97438 * 27 7 6
51 51 H 1.08000 * 120.03441 * 179.97438 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3474 0.0000
4 6 3.3535 1.5255 0.0005
5 6 4.1997 0.4261 0.0068
6 6 5.5689 0.6099 0.0021
7 6 6.0961 1.8881 0.0016
8 6 7.5901 2.0856 0.0021
9 6 8.0951 2.1527 1.4448
10 7 9.5475 2.3441 1.4455
11 6 10.4395 1.1821 1.4462
12 6 10.0631 3.5894 1.4453
13 8 9.3246 4.5515 1.4450
14 6 11.5572 3.7862 1.4453
15 1 12.0203 3.0531 0.7848
16 7 11.8727 5.1404 0.9714
17 6 12.0955 3.6048 2.8659
18 6 13.6235 3.6810 2.8459
19 6 14.1537 3.5017 4.2452
20 1 13.4693 3.3483 5.0664
21 6 15.5126 3.5324 4.4767
22 7 16.3460 3.7187 3.4765
23 14 16.1698 3.3094 6.2109
24 1 15.7466 1.9858 6.7343
25 1 17.6528 3.3835 6.1915
26 1 15.6325 4.3824 7.0857
27 6 5.2549 2.9853 0.0010
28 6 3.8850 2.8070 0.0003
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5137 0.8900
34 1 3.7884 -0.5724 0.0117
35 1 6.2281 -0.2456 0.0032
36 1 8.0671 1.2509 -0.5113
37 1 7.8338 3.0155 -0.5117
38 1 7.6180 2.9875 1.9584
39 1 7.8513 1.2229 1.9588
40 1 10.6612 0.8935 0.4187
41 1 11.3665 1.4358 1.9603
42 1 9.9546 0.3521 1.9601
43 1 11.4543 5.8389 1.5676
44 1 12.8700 5.2758 0.9009
45 1 11.7008 4.3927 3.5074
46 1 11.7852 2.6334 3.2508
47 1 14.0182 2.8931 2.2044
48 1 13.9338 4.6525 2.4611
49 1 17.3019 3.7407 3.6394
50 1 5.6690 3.9828 0.0011
51 1 3.2282 3.6644 0.0003
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001122407901.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:22:08
Heat of formation + Delta-G solvation = -67.227701 kcal
Electronic energy + Delta-G solvation = -27870.580215 eV
Core-core repulsion = 23962.470275 eV
Total energy + Delta-G solvation = -3908.109940 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.49224 -39.85520 -38.15350 -35.87913 -35.41194 -33.13720 -32.81331 -31.79934
-31.14679 -29.89983 -28.59529 -26.75942 -26.16877 -24.58625 -24.20912 -22.86781
-22.21839 -21.07631 -20.35061 -18.85790 -18.58566 -17.33884 -16.50104 -16.42001
-16.32848 -16.11527 -15.53414 -15.00971 -14.74561 -14.63855 -14.40596 -14.12905
-13.84753 -13.76567 -13.74128 -13.47394 -13.13676 -13.03690 -12.94855 -12.71117
-12.62460 -12.18812 -12.12702 -12.09350 -11.97443 -11.66366 -11.57514 -11.18805
-11.05088 -11.02430 -10.90693 -10.84320 -10.71200 -9.97037 -9.88581 -9.28375
-9.24214 -9.17184 -8.72099 -8.44439 -8.22881 -8.16045 -6.09270 -4.12561
1.10228 1.15973 2.84305 2.92939 3.10316 3.27809 3.32867 3.35263
3.52197 4.38567 4.42350 4.45683 4.58823 4.62339 4.69333 4.77838
4.79255 4.98199 5.05541 5.12260 5.16623 5.22319 5.22962 5.26536
5.27844 5.31361 5.44750 5.48555 5.52745 5.57346 5.60991 5.69597
5.77072 5.80816 5.87556 5.97937 6.07139 6.09878 6.28798 6.45398
6.52382 6.53953 6.62611 6.86692 7.11915 7.38778 7.50549 7.59316
7.65113 7.87620 7.92308 8.30157 8.45324 8.93162 9.52407 11.01519
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.026020 B = 0.001710 C = 0.001664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1075.825143 B =16374.453625 C =16824.998373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.054 3.946
3 O -0.318 6.318
4 C 0.123 3.877
5 C -0.208 4.208
6 C -0.076 4.076
7 C -0.113 4.113
8 C -0.091 4.091
9 C 0.123 3.877
10 N -0.621 5.621
11 C 0.069 3.931
12 C 0.526 3.474
13 O -0.536 6.536
14 C 0.074 3.926
15 H 0.096 0.904
16 N -0.831 5.831
17 C -0.140 4.140
18 C 0.025 3.975
19 C -0.525 4.525
20 H 0.054 0.946
21 C 0.060 3.940
22 N -0.893 5.893
23 Si 0.893 3.107
24 H -0.277 1.277
25 H -0.287 1.287
26 H -0.277 1.277
27 C -0.072 4.072
28 C -0.150 4.150
29 H 0.066 0.934
30 H 0.066 0.934
31 H 0.078 0.922
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.125 0.875
35 H 0.124 0.876
36 H 0.072 0.928
37 H 0.077 0.923
38 H 0.083 0.917
39 H 0.074 0.926
40 H 0.055 0.945
41 H 0.087 0.913
42 H 0.069 0.931
43 H 0.345 0.655
44 H 0.354 0.646
45 H 0.054 0.946
46 H 0.058 0.942
47 H 0.018 0.982
48 H 0.018 0.982
49 H 0.262 0.738
50 H 0.132 0.868
51 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.250 -10.072 -9.035 29.532
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.021 4.021
3 O -0.233 6.233
4 C 0.078 3.922
5 C -0.227 4.227
6 C -0.094 4.094
7 C -0.114 4.114
8 C -0.130 4.130
9 C 0.000 4.000
10 N -0.355 5.355
11 C -0.074 4.074
12 C 0.315 3.685
13 O -0.412 6.412
14 C -0.041 4.041
15 H 0.114 0.886
16 N -0.363 5.363
17 C -0.179 4.179
18 C -0.012 4.012
19 C -0.563 4.563
20 H 0.072 0.928
21 C -0.142 4.142
22 N -0.532 5.532
23 Si 0.721 3.279
24 H -0.202 1.202
25 H -0.212 1.212
26 H -0.202 1.202
27 C -0.090 4.090
28 C -0.168 4.168
29 H 0.085 0.915
30 H 0.085 0.915
31 H 0.096 0.904
32 H 0.079 0.921
33 H 0.080 0.920
34 H 0.143 0.857
35 H 0.142 0.858
36 H 0.090 0.910
37 H 0.096 0.904
38 H 0.101 0.899
39 H 0.092 0.908
40 H 0.073 0.927
41 H 0.106 0.894
42 H 0.088 0.912
43 H 0.158 0.842
44 H 0.169 0.831
45 H 0.073 0.927
46 H 0.077 0.923
47 H 0.037 0.963
48 H 0.036 0.964
49 H 0.072 0.928
50 H 0.150 0.850
51 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -26.989 -9.603 -9.742 30.258
hybrid contribution 1.047 -0.499 1.876 2.205
sum -25.943 -10.102 -7.866 28.930
Atomic orbital electron populations
1.21778 0.92741 1.02866 1.03567 1.22770 0.95870 0.82059 1.01371
1.86065 1.19213 1.29218 1.88766 1.18998 0.82132 0.94226 0.96886
1.21195 0.94329 0.97889 1.09274 1.20845 0.94171 0.96761 0.97672
1.19731 0.95515 0.92998 1.03156 1.20909 0.90660 1.03328 0.98068
1.21398 0.80183 1.02527 0.95869 1.47851 1.06335 1.06496 1.74833
1.21995 0.95377 0.88013 1.01973 1.20925 0.91258 0.81985 0.74338
1.90619 1.61713 1.39775 1.49089 1.21503 0.90506 0.93843 0.98228
0.88578 1.58756 1.17982 1.02281 1.57272 1.22436 1.00919 1.01405
0.93156 1.19101 0.87305 0.97357 0.97470 1.21144 0.91699 1.49944
0.93548 0.92779 1.25002 0.97101 0.95113 0.97001 1.69939 1.02812
1.49605 1.30797 0.86646 0.77749 0.78743 0.84811 1.20230 1.21209
1.20239 1.20981 0.91962 0.99191 0.96831 1.20444 0.95237 0.94787
1.06352 0.91482 0.91510 0.90368 0.92089 0.92049 0.85676 0.85777
0.90979 0.90391 0.89899 0.90788 0.92669 0.89437 0.91225 0.84185
0.83115 0.92676 0.92325 0.96328 0.96384 0.92823 0.85002 0.85251
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16
2 C 0.05 0.34 5.46 37.16 0.20 0.54 16
3 O -0.32 -3.06 10.14 -19.41 -0.20 -3.26 16
4 C 0.12 1.24 6.69 -39.21 -0.26 0.98 16
5 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16
6 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16
7 C -0.11 -1.15 5.13 -104.60 -0.54 -1.69 16
8 C -0.09 -0.96 5.67 -27.88 -0.16 -1.12 16
9 C 0.12 1.44 5.43 -4.04 -0.02 1.42 16
10 N -0.62 -8.33 2.87 -181.58 -0.52 -8.85 16
11 C 0.07 0.76 9.89 59.84 0.59 1.36 16
12 C 0.53 8.87 6.93 -10.98 -0.08 8.79 16
13 O -0.54 -10.48 15.83 5.56 0.09 -10.39 16
14 C 0.07 1.27 2.37 -68.87 -0.16 1.11 16
15 H 0.10 1.57 7.21 -51.93 -0.37 1.19 16
16 N -0.83 -14.50 8.94 -5.66 -0.05 -14.55 16
17 C -0.14 -2.72 4.45 -26.73 -0.12 -2.84 16
18 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16
19 C -0.53 -14.27 9.11 -34.44 -0.31 -14.59 16
20 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16
21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
22 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16
23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16
24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
27 C -0.07 -0.75 9.69 -39.61 -0.38 -1.13 16
28 C -0.15 -1.54 9.99 -39.43 -0.39 -1.93 16
29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16
30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16
32 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16
33 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16
34 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16
35 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16
36 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16
37 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16
38 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16
39 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16
40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.09 1.10 4.83 -51.93 -0.25 0.85 16
42 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16
43 H 0.34 6.11 8.58 -39.29 -0.34 5.77 16
44 H 0.35 6.15 7.55 -39.29 -0.30 5.86 16
45 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16
46 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16
47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
48 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16
49 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16
50 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16
51 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16
LS Contribution 413.48 15.07 6.23 6.23
Total: -1.00 -32.03 413.48 -9.42 -41.45
By element:
Atomic # 1 Polarization: 17.48 SS G_CDS: -8.47 Total: 9.02 kcal
Atomic # 6 Polarization: -8.48 SS G_CDS: -2.22 Total: -10.70 kcal
Atomic # 7 Polarization: -48.62 SS G_CDS: 0.16 Total: -48.45 kcal
Atomic # 8 Polarization: -13.54 SS G_CDS: -0.11 Total: -13.65 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal
Total LS contribution 6.23 Total: 6.23 kcal
Total: -32.03 -9.42 -41.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001122407901.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.778 kcal
(2) G-P(sol) polarization free energy of solvation -32.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds