Wall clock time and date at job start Tue Mar 31 2020 19:22:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42905 * 109.46728 * 2 1
4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1
5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2
6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3
7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4
8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5
9 9 C 1.53002 * 109.46527 * 270.01931 * 8 7 6
10 10 N 1.46498 * 109.47099 * 179.97438 * 9 8 7
11 11 C 1.46495 * 120.00207 * 270.00118 * 10 9 8
12 12 C 1.34783 * 120.00166 * 89.99587 * 10 9 8
13 13 O 1.21283 * 119.99709 * 0.02562 * 12 10 9
14 14 C 1.50698 * 119.99836 * 180.02562 * 12 10 9
15 15 H 1.09004 * 109.47347 * 40.00402 * 14 12 10
16 16 N 1.46899 * 109.46913 * 160.00156 * 14 12 10
17 17 C 1.52994 * 109.47164 * 279.99851 * 14 12 10
18 18 C 1.53010 * 109.47028 * 175.00253 * 17 14 12
19 19 C 1.50703 * 109.46951 * 180.02562 * 18 17 14
20 20 H 1.08000 * 119.99706 * 0.02562 * 19 18 17
21 21 C 1.37876 * 119.99923 * 179.97438 * 19 18 17
22 22 N 1.31520 * 119.99962 * 0.02562 * 21 19 18
23 23 Si 1.86793 * 120.00017 * 180.02562 * 21 19 18
24 24 H 1.48494 * 109.47293 * 59.99993 * 23 21 19
25 25 H 1.48497 * 109.47054 * 180.02562 * 23 21 19
26 26 H 1.48505 * 109.47295 * 300.00098 * 23 21 19
27 27 C 1.38262 * 120.11048 * 359.76434 * 7 6 5
28 28 C 1.38145 * 120.05942 * 359.97438 * 27 7 6
29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3
30 30 H 1.09001 * 109.47362 * 60.00784 * 1 2 3
31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47486 * 239.99938 * 2 1 3
33 33 H 1.09001 * 109.47362 * 119.99215 * 2 1 3
34 34 H 1.07995 * 120.02746 * 359.97438 * 5 4 3
35 35 H 1.08004 * 119.97067 * 180.22662 * 6 5 4
36 36 H 1.08992 * 109.47037 * 30.01395 * 8 7 6
37 37 H 1.08998 * 109.46989 * 150.02347 * 8 7 6
38 38 H 1.09004 * 109.47165 * 299.99904 * 9 8 7
39 39 H 1.08993 * 109.47678 * 59.99781 * 9 8 7
40 40 H 1.09001 * 109.47173 * 89.99550 * 11 10 9
41 41 H 1.08996 * 109.47444 * 209.99848 * 11 10 9
42 42 H 1.08999 * 109.47087 * 329.99730 * 11 10 9
43 43 H 1.00907 * 111.00229 * 60.00081 * 16 14 12
44 44 H 1.00897 * 111.00550 * 183.95319 * 16 14 12
45 45 H 1.08996 * 109.47509 * 295.00091 * 17 14 12
46 46 H 1.09002 * 109.47421 * 55.00677 * 17 14 12
47 47 H 1.08996 * 109.46844 * 300.00246 * 18 17 14
48 48 H 1.08999 * 109.46726 * 60.00485 * 18 17 14
49 49 H 0.96995 * 119.99671 * 179.97438 * 22 21 19
50 50 H 1.08008 * 119.97547 * 179.97438 * 27 7 6
51 51 H 1.08000 * 120.03441 * 179.97438 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3474 0.0000
4 6 3.3535 1.5255 0.0005
5 6 4.1997 0.4261 0.0068
6 6 5.5689 0.6099 0.0021
7 6 6.0961 1.8881 0.0016
8 6 7.5901 2.0856 0.0021
9 6 8.0951 2.1527 1.4448
10 7 9.5475 2.3441 1.4455
11 6 10.4395 1.1821 1.4462
12 6 10.0631 3.5894 1.4453
13 8 9.3246 4.5515 1.4450
14 6 11.5572 3.7862 1.4453
15 1 12.0203 3.0531 0.7848
16 7 11.8727 5.1404 0.9714
17 6 12.0955 3.6048 2.8659
18 6 13.6235 3.6810 2.8459
19 6 14.1537 3.5017 4.2452
20 1 13.4693 3.3483 5.0664
21 6 15.5126 3.5324 4.4767
22 7 16.3460 3.7187 3.4765
23 14 16.1698 3.3094 6.2109
24 1 15.7466 1.9858 6.7343
25 1 17.6528 3.3835 6.1915
26 1 15.6325 4.3824 7.0857
27 6 5.2549 2.9853 0.0010
28 6 3.8850 2.8070 0.0003
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5137 0.8900
34 1 3.7884 -0.5724 0.0117
35 1 6.2281 -0.2456 0.0032
36 1 8.0671 1.2509 -0.5113
37 1 7.8338 3.0155 -0.5117
38 1 7.6180 2.9875 1.9584
39 1 7.8513 1.2229 1.9588
40 1 10.6612 0.8935 0.4187
41 1 11.3665 1.4358 1.9603
42 1 9.9546 0.3521 1.9601
43 1 11.4543 5.8389 1.5676
44 1 12.8700 5.2758 0.9009
45 1 11.7008 4.3927 3.5074
46 1 11.7852 2.6334 3.2508
47 1 14.0182 2.8931 2.2044
48 1 13.9338 4.6525 2.4611
49 1 17.3019 3.7407 3.6394
50 1 5.6690 3.9828 0.0011
51 1 3.2282 3.6644 0.0003
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001122407901.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:22:07
Heat of formation + Delta-G solvation = -86.436267 kcal
Electronic energy + Delta-G solvation = -27871.413161 eV
Core-core repulsion = 23962.470275 eV
Total energy + Delta-G solvation = -3908.942886 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.30162 -40.98870 -38.88798 -37.21888 -36.75765 -34.85665 -33.82976 -32.40963
-31.81981 -31.68505 -29.51828 -28.10511 -27.36761 -25.88817 -24.93768 -24.09239
-22.92764 -22.15127 -21.68394 -20.11487 -19.23504 -18.78537 -18.17095 -17.42650
-17.03185 -16.97184 -16.52318 -16.51754 -15.99316 -15.89189 -15.53199 -15.38102
-14.89365 -14.73437 -14.48415 -14.43537 -14.33799 -14.08313 -13.91253 -13.76402
-13.53362 -13.40746 -13.36635 -13.21463 -12.82309 -12.67535 -12.63260 -12.56417
-12.52161 -12.37330 -11.95797 -11.76024 -11.69012 -11.59600 -11.58212 -11.30461
-10.65639 -10.53988 -9.96676 -9.78238 -9.60999 -9.00574 -8.20198 -6.30626
0.37545 0.41563 1.40858 1.42293 1.50220 1.60993 2.00496 2.26839
2.40941 2.77277 3.13451 3.54124 3.75651 3.81167 3.91823 3.98075
4.05794 4.06284 4.11857 4.19874 4.24792 4.29214 4.33633 4.36771
4.43853 4.46497 4.59537 4.61778 4.63952 4.74228 4.81308 4.87411
4.91560 4.93646 4.98314 5.10586 5.11895 5.13654 5.20568 5.32013
5.38856 5.47968 5.59616 5.66387 5.70423 5.81757 5.83476 6.05852
6.22086 6.37510 6.47098 6.47559 6.84383 7.18299 7.38476 8.90236
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.026020 B = 0.001710 C = 0.001664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1075.825143 B =16374.453625 C =16824.998373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.045 3.955
3 O -0.336 6.336
4 C 0.113 3.887
5 C -0.208 4.208
6 C -0.073 4.073
7 C -0.123 4.123
8 C -0.079 4.079
9 C 0.123 3.877
10 N -0.612 5.612
11 C 0.063 3.937
12 C 0.523 3.477
13 O -0.571 6.571
14 C 0.081 3.919
15 H 0.108 0.892
16 N -0.831 5.831
17 C -0.121 4.121
18 C 0.031 3.969
19 C -0.546 4.546
20 H 0.054 0.946
21 C 0.008 3.992
22 N -0.926 5.926
23 Si 0.958 3.042
24 H -0.266 1.266
25 H -0.283 1.283
26 H -0.273 1.273
27 C -0.084 4.084
28 C -0.165 4.165
29 H 0.060 0.940
30 H 0.061 0.939
31 H 0.100 0.900
32 H 0.072 0.928
33 H 0.071 0.929
34 H 0.149 0.851
35 H 0.150 0.850
36 H 0.090 0.910
37 H 0.052 0.948
38 H 0.059 0.941
39 H 0.103 0.897
40 H 0.074 0.926
41 H 0.070 0.930
42 H 0.099 0.901
43 H 0.343 0.657
44 H 0.352 0.648
45 H 0.041 0.959
46 H 0.070 0.930
47 H 0.004 0.996
48 H 0.001 0.999
49 H 0.264 0.736
50 H 0.124 0.876
51 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.147 -12.813 -8.610 31.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.029 4.029
3 O -0.251 6.251
4 C 0.068 3.932
5 C -0.226 4.226
6 C -0.090 4.090
7 C -0.124 4.124
8 C -0.117 4.117
9 C 0.001 3.999
10 N -0.345 5.345
11 C -0.078 4.078
12 C 0.311 3.689
13 O -0.450 6.450
14 C -0.034 4.034
15 H 0.126 0.874
16 N -0.362 5.362
17 C -0.161 4.161
18 C -0.006 4.006
19 C -0.584 4.584
20 H 0.073 0.927
21 C -0.191 4.191
22 N -0.565 5.565
23 Si 0.783 3.217
24 H -0.191 1.191
25 H -0.208 1.208
26 H -0.198 1.198
27 C -0.103 4.103
28 C -0.184 4.184
29 H 0.080 0.920
30 H 0.080 0.920
31 H 0.119 0.881
32 H 0.090 0.910
33 H 0.089 0.911
34 H 0.167 0.833
35 H 0.168 0.832
36 H 0.109 0.891
37 H 0.071 0.929
38 H 0.078 0.922
39 H 0.121 0.879
40 H 0.093 0.907
41 H 0.089 0.911
42 H 0.118 0.882
43 H 0.156 0.844
44 H 0.167 0.833
45 H 0.059 0.941
46 H 0.088 0.912
47 H 0.023 0.977
48 H 0.019 0.981
49 H 0.073 0.927
50 H 0.142 0.858
51 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -27.907 -12.386 -9.319 31.923
hybrid contribution 1.256 0.305 1.711 2.144
sum -26.651 -12.082 -7.608 30.235
Atomic orbital electron populations
1.21813 0.91710 1.04162 1.03069 1.23059 0.96768 0.80759 1.02340
1.86054 1.18961 1.31392 1.88691 1.19171 0.82732 0.94484 0.96832
1.21479 0.94232 0.98616 1.08279 1.21115 0.94623 0.96855 0.96454
1.19744 0.95066 0.93557 1.04025 1.20754 0.91161 1.02760 0.97052
1.21530 0.78743 1.02909 0.96768 1.47903 1.07536 1.06022 1.73044
1.22201 0.94493 0.87665 1.03488 1.20794 0.90680 0.82867 0.74568
1.90606 1.62159 1.41176 1.51024 1.21428 0.91285 0.93894 0.96780
0.87427 1.58772 1.17796 1.02528 1.57129 1.22175 0.97745 1.01500
0.94686 1.18959 0.90156 0.95742 0.95733 1.21586 0.92178 1.49722
0.94927 0.92747 1.25836 0.97475 0.94798 1.00993 1.70054 1.03071
1.50537 1.32870 0.85613 0.77097 0.79062 0.79954 1.19115 1.20833
1.19826 1.21018 0.92346 0.99303 0.97592 1.20553 0.95279 0.95484
1.07077 0.92041 0.91958 0.88147 0.90990 0.91065 0.83293 0.83188
0.89130 0.92902 0.92246 0.87877 0.90718 0.91144 0.88212 0.84448
0.83300 0.94066 0.91185 0.97714 0.98103 0.92745 0.85778 0.85128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.15 10.28 71.98 0.74 -0.41 16
2 C 0.05 0.48 5.46 71.98 0.39 0.88 16
3 O -0.34 -6.20 10.14 -92.39 -0.94 -7.13 16
4 C 0.11 2.19 6.69 22.51 0.15 2.34 16
5 C -0.21 -3.22 9.04 22.37 0.20 -3.02 16
6 C -0.07 -1.12 9.69 22.25 0.22 -0.90 16
7 C -0.12 -2.36 5.13 -19.85 -0.10 -2.46 16
8 C -0.08 -1.56 5.67 29.85 0.17 -1.39 16
9 C 0.12 2.67 5.43 86.38 0.47 3.14 16
10 N -0.61 -15.45 2.87 -846.77 -2.43 -17.88 16
11 C 0.06 1.21 9.89 127.77 1.26 2.48 16
12 C 0.52 17.45 6.93 87.66 0.61 18.06 16
13 O -0.57 -22.71 15.83 -3.04 -0.05 -22.75 16
14 C 0.08 2.78 2.37 44.17 0.10 2.88 16
15 H 0.11 3.42 7.21 -2.39 -0.02 3.41 16
16 N -0.83 -29.46 8.94 -171.81 -1.54 -30.99 16
17 C -0.12 -4.74 4.45 30.60 0.14 -4.60 16
18 C 0.03 1.52 4.74 29.85 0.14 1.66 16
19 C -0.55 -29.75 9.11 25.60 0.23 -29.52 16
20 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16
21 C 0.01 0.42 5.46 84.65 0.46 0.89 16
22 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16
23 Si 0.96 43.00 29.54 68.60 2.03 45.03 16
24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
27 C -0.08 -1.80 9.69 22.25 0.22 -1.59 16
28 C -0.17 -3.45 9.99 22.37 0.22 -3.23 16
29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
31 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16
32 H 0.07 0.60 7.68 -2.39 -0.02 0.58 16
33 H 0.07 0.61 7.65 -2.39 -0.02 0.59 16
34 H 0.15 1.52 6.30 -2.91 -0.02 1.51 16
35 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16
36 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16
37 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16
38 H 0.06 1.60 7.42 -2.39 -0.02 1.58 16
39 H 0.10 1.66 7.89 -2.39 -0.02 1.64 16
40 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16
41 H 0.07 1.63 4.83 -2.39 -0.01 1.62 16
42 H 0.10 1.34 7.89 -2.39 -0.02 1.32 16
43 H 0.34 12.46 8.58 -89.69 -0.77 11.69 16
44 H 0.35 12.55 7.55 -89.70 -0.68 11.87 16
45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
46 H 0.07 2.56 6.43 -2.39 -0.02 2.54 16
47 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16
48 H 0.00 0.04 6.87 -2.39 -0.02 0.02 16
49 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16
50 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16
51 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16
Total: -1.00 -69.53 413.48 2.47 -67.06
By element:
Atomic # 1 Polarization: 35.55 SS G_CDS: -0.52 Total: 35.03 kcal
Atomic # 6 Polarization: -20.43 SS G_CDS: 5.63 Total: -14.81 kcal
Atomic # 7 Polarization: -98.74 SS G_CDS: -3.68 Total: -102.42 kcal
Atomic # 8 Polarization: -28.90 SS G_CDS: -0.98 Total: -29.89 kcal
Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal
Total: -69.53 2.47 -67.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001122407901.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.380 kcal
(2) G-P(sol) polarization free energy of solvation -69.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.436 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds