Wall clock time and date at job start Tue Mar 31 2020 19:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47324 * 2 1 4 4 C 1.35900 * 117.00086 * 180.02562 * 3 2 1 5 5 C 1.38740 * 120.05712 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94681 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94136 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00102 * 8 7 6 10 10 N 1.46500 * 109.47473 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99679 * 90.00212 * 10 9 8 12 12 C 1.34774 * 120.00273 * 270.00246 * 10 9 8 13 13 O 1.21286 * 119.99764 * 359.97438 * 12 10 9 14 14 C 1.50697 * 120.00258 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46780 * 319.99577 * 14 12 10 16 16 N 1.46901 * 109.47043 * 200.00416 * 14 12 10 17 17 C 1.52995 * 109.47552 * 79.99613 * 14 12 10 18 18 C 1.52992 * 109.47305 * 185.00098 * 17 14 12 19 19 C 1.50704 * 109.46945 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00079 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99634 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99686 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00370 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47336 * 89.99760 * 23 21 19 25 25 H 1.48498 * 109.47215 * 210.00147 * 23 21 19 26 26 H 1.48503 * 109.47002 * 329.99697 * 23 21 19 27 27 C 1.38261 * 120.11222 * 0.25270 * 7 6 5 28 28 C 1.38144 * 120.05633 * 359.45047 * 27 7 6 29 29 H 1.09000 * 109.46990 * 300.00023 * 1 2 3 30 30 H 1.08998 * 109.47102 * 59.99979 * 1 2 3 31 31 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46990 * 239.99977 * 2 1 3 33 33 H 1.09000 * 109.47320 * 120.00523 * 2 1 3 34 34 H 1.07998 * 120.02343 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.97195 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47060 * 210.00157 * 8 7 6 37 37 H 1.09001 * 109.47380 * 330.00244 * 8 7 6 38 38 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 39 39 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 40 40 H 1.08996 * 109.47220 * 90.00398 * 11 10 9 41 41 H 1.09001 * 109.46688 * 210.00173 * 11 10 9 42 42 H 1.08998 * 109.47230 * 329.99640 * 11 10 9 43 43 H 1.00905 * 110.99796 * 176.04835 * 16 14 12 44 44 H 1.00902 * 110.99207 * 299.99366 * 16 14 12 45 45 H 1.09000 * 109.47239 * 305.00443 * 17 14 12 46 46 H 1.09002 * 109.46768 * 64.99763 * 17 14 12 47 47 H 1.09001 * 109.47677 * 300.00013 * 18 17 14 48 48 H 1.09005 * 109.47281 * 60.00594 * 18 17 14 49 49 H 0.97003 * 120.00013 * 179.97438 * 22 21 19 50 50 H 1.07999 * 119.97190 * 179.70663 * 27 7 6 51 51 H 1.08001 * 120.03140 * 180.25189 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8068 0.0000 6 6 5.2551 2.9851 -0.0011 7 6 6.0963 1.8877 -0.0032 8 6 7.5903 2.0852 -0.0050 9 6 8.0978 2.1506 1.4368 10 7 9.5502 2.3420 1.4352 11 6 10.1107 3.6956 1.4356 12 6 10.3708 1.2729 1.4333 13 8 9.9068 0.1523 1.4334 14 6 11.8649 1.4697 1.4310 15 1 12.1212 2.2980 0.7704 16 7 12.5196 0.2436 0.9554 17 6 12.3402 1.7839 2.8509 18 6 13.8356 2.1062 2.8286 19 6 14.3038 2.4150 4.2273 20 1 13.6047 2.3841 5.0500 21 6 15.6247 2.7371 4.4568 22 7 16.0332 3.0071 5.6774 23 14 16.8337 2.7912 3.0338 24 1 16.8586 4.1595 2.4572 25 1 18.1899 2.4353 3.5228 26 1 16.4136 1.8218 1.9902 27 6 5.5690 0.6096 -0.0096 28 6 4.1999 0.4259 -0.0023 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2286 3.6642 0.0012 35 1 5.6693 3.9825 -0.0003 36 1 8.0664 1.2509 -0.5203 37 1 7.8332 3.0156 -0.5183 38 1 7.6216 2.9848 1.9521 39 1 7.8549 1.2203 1.9502 40 1 10.2510 4.0304 2.4634 41 1 11.0713 3.6912 0.9206 42 1 9.4268 4.3721 0.9232 43 1 13.5179 0.3714 0.8834 44 1 12.2973 -0.5394 1.5517 45 1 11.7894 2.6416 3.2370 46 1 12.1640 0.9204 3.4924 47 1 14.3865 1.2485 2.4426 48 1 14.0117 2.9697 2.1871 49 1 16.9625 3.2334 5.8389 50 1 6.2281 -0.2459 -0.0160 51 1 3.7885 -0.5727 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122407903.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:11 Heat of formation + Delta-G solvation = -63.447363 kcal Electronic energy + Delta-G solvation = -27939.803505 eV Core-core repulsion = 24031.857493 eV Total energy + Delta-G solvation = -3907.946013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51040 -39.92326 -38.17601 -35.98893 -35.49891 -33.15722 -32.78126 -31.81321 -31.16903 -30.31951 -28.67220 -26.95751 -26.31580 -24.63592 -24.20828 -22.75241 -22.25196 -21.05798 -20.28966 -18.91373 -18.59538 -17.45942 -16.73674 -16.49784 -16.39498 -16.28700 -15.58469 -15.02026 -14.86537 -14.53997 -14.27876 -14.17311 -13.98625 -13.77932 -13.76944 -13.57032 -13.21411 -13.06881 -12.94357 -12.78994 -12.66529 -12.54584 -12.39254 -12.10726 -12.02546 -11.73431 -11.63161 -11.34789 -11.20318 -11.04088 -10.96290 -10.88061 -10.34415 -10.06614 -9.89396 -9.35409 -9.31887 -9.26368 -8.76272 -8.62802 -8.31240 -8.24519 -6.12432 -4.11982 1.07696 1.14619 2.83312 2.86273 3.03191 3.23940 3.32667 3.33790 3.49946 4.36808 4.42871 4.46538 4.57647 4.60091 4.65590 4.73894 4.79267 4.95181 5.01773 5.04388 5.08488 5.11555 5.16624 5.20600 5.24845 5.31832 5.33858 5.36977 5.49745 5.56572 5.59167 5.61605 5.68431 5.80572 5.82342 5.95888 6.04035 6.10221 6.15601 6.32264 6.42818 6.50450 6.55483 6.65303 7.08936 7.10389 7.20779 7.28735 7.52857 7.66182 7.78242 8.37699 8.44083 8.91636 9.48837 11.00784 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.030325 B = 0.001735 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.113305 B =16131.291614 C =16304.299424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.123 3.877 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.114 4.114 8 C -0.091 4.091 9 C 0.123 3.877 10 N -0.620 5.620 11 C 0.074 3.926 12 C 0.526 3.474 13 O -0.536 6.536 14 C 0.070 3.930 15 H 0.098 0.902 16 N -0.831 5.831 17 C -0.130 4.130 18 C -0.010 4.010 19 C -0.524 4.524 20 H 0.071 0.929 21 C 0.068 3.932 22 N -0.901 5.901 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.265 1.265 27 C -0.071 4.071 28 C -0.206 4.206 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.350 0.650 44 H 0.347 0.653 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.013 0.987 49 H 0.264 0.736 50 H 0.127 0.873 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.911 -1.189 -14.192 30.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.078 3.922 5 C -0.170 4.170 6 C -0.094 4.094 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.000 4.000 10 N -0.354 5.354 11 C -0.069 4.069 12 C 0.315 3.685 13 O -0.411 6.411 14 C -0.045 4.045 15 H 0.115 0.885 16 N -0.363 5.363 17 C -0.169 4.169 18 C -0.047 4.047 19 C -0.562 4.562 20 H 0.089 0.911 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.190 1.190 27 C -0.089 4.089 28 C -0.225 4.225 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.032 0.968 49 H 0.074 0.926 50 H 0.145 0.855 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.582 -1.513 -14.742 31.312 hybrid contribution 1.318 0.010 0.369 1.368 sum -26.265 -1.503 -14.373 29.978 Atomic orbital electron populations 1.21776 0.92716 1.02904 1.03520 1.22781 0.95871 0.82000 1.01481 1.86054 1.19176 1.29302 1.88749 1.19001 0.82158 0.94225 0.96807 1.20401 0.95191 0.94743 1.06675 1.20875 0.92017 0.98722 0.97832 1.19715 0.95404 0.93067 1.03302 1.20903 0.90820 1.03194 0.98006 1.21391 0.79578 1.03144 0.95902 1.47852 1.06085 1.06804 1.74686 1.21922 0.99784 0.82572 1.02625 1.20801 0.89160 0.83996 0.74551 1.90627 1.77653 1.23723 1.49137 1.21574 0.89922 0.94773 0.98203 0.88458 1.58763 1.15127 1.04979 1.57446 1.22194 0.99659 1.01842 0.93243 1.19569 0.90856 0.96044 0.98266 1.21067 0.95337 1.47275 0.92488 0.91090 1.25040 0.98304 0.94511 0.95542 1.69914 1.16740 1.47233 1.20027 0.86766 0.80581 0.78835 0.82999 1.20256 1.21334 1.18988 1.20940 0.94215 0.97122 0.96643 1.21237 0.94330 0.98002 1.08924 0.91485 0.91542 0.90336 0.92047 0.91971 0.85309 0.85307 0.90481 0.90934 0.90585 0.89868 0.91845 0.90433 0.91271 0.83535 0.83907 0.91795 0.92129 0.96626 0.96827 0.92636 0.85487 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.16 0.38 -0.33 16 2 C 0.05 0.35 5.46 37.16 0.20 0.55 16 3 O -0.32 -3.02 10.14 -19.43 -0.20 -3.22 16 4 C 0.12 1.23 6.69 -39.21 -0.26 0.96 16 5 C -0.15 -1.41 9.99 -39.43 -0.39 -1.81 16 6 C -0.08 -0.68 9.69 -39.61 -0.38 -1.06 16 7 C -0.11 -1.12 5.13 -104.60 -0.54 -1.66 16 8 C -0.09 -0.92 5.67 -27.88 -0.16 -1.08 16 9 C 0.12 1.38 5.39 -4.04 -0.02 1.36 16 10 N -0.62 -7.95 2.87 -181.57 -0.52 -8.47 16 11 C 0.07 0.76 9.56 59.85 0.57 1.33 16 12 C 0.53 8.49 6.93 -10.99 -0.08 8.42 16 13 O -0.54 -10.14 15.83 5.55 0.09 -10.05 16 14 C 0.07 1.13 2.47 -68.87 -0.17 0.96 16 15 H 0.10 1.43 6.31 -51.93 -0.33 1.10 16 16 N -0.83 -13.52 8.94 -5.66 -0.05 -13.57 16 17 C -0.13 -2.43 4.71 -26.74 -0.13 -2.56 16 18 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 19 C -0.52 -14.42 9.66 -34.44 -0.33 -14.76 16 20 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 23 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 27 C -0.07 -0.72 9.69 -39.61 -0.38 -1.10 16 28 C -0.21 -1.96 9.04 -39.43 -0.36 -2.31 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 33 H 0.06 0.36 7.67 -51.93 -0.40 -0.03 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.08 1.10 7.42 -51.93 -0.39 0.71 16 40 H 0.06 0.67 7.65 -51.93 -0.40 0.28 16 41 H 0.08 0.80 5.94 -51.93 -0.31 0.49 16 42 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 43 H 0.35 5.51 7.55 -39.29 -0.30 5.21 16 44 H 0.35 5.79 8.58 -39.29 -0.34 5.45 16 45 H 0.06 1.17 6.94 -51.93 -0.36 0.81 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.02 0.34 5.93 -51.93 -0.31 0.04 16 48 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 51 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 LS Contribution 410.46 15.07 6.19 6.19 Total: -1.00 -33.09 410.46 -9.10 -42.20 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.46 Total: 8.70 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.25 Total: -11.59 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.20 Total: -48.50 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.11 Total: -13.27 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.09 -9.10 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122407903.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.251 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds