Wall clock time and date at job start Tue Mar 31 2020 19:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47324 * 2 1 4 4 C 1.35900 * 117.00086 * 180.02562 * 3 2 1 5 5 C 1.38740 * 120.05712 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94681 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94136 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00102 * 8 7 6 10 10 N 1.46500 * 109.47473 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99679 * 90.00212 * 10 9 8 12 12 C 1.34774 * 120.00273 * 270.00246 * 10 9 8 13 13 O 1.21286 * 119.99764 * 359.97438 * 12 10 9 14 14 C 1.50697 * 120.00258 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46780 * 319.99577 * 14 12 10 16 16 N 1.46901 * 109.47043 * 200.00416 * 14 12 10 17 17 C 1.52995 * 109.47552 * 79.99613 * 14 12 10 18 18 C 1.52992 * 109.47305 * 185.00098 * 17 14 12 19 19 C 1.50704 * 109.46945 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00079 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99634 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99686 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00370 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47336 * 89.99760 * 23 21 19 25 25 H 1.48498 * 109.47215 * 210.00147 * 23 21 19 26 26 H 1.48503 * 109.47002 * 329.99697 * 23 21 19 27 27 C 1.38261 * 120.11222 * 0.25270 * 7 6 5 28 28 C 1.38144 * 120.05633 * 359.45047 * 27 7 6 29 29 H 1.09000 * 109.46990 * 300.00023 * 1 2 3 30 30 H 1.08998 * 109.47102 * 59.99979 * 1 2 3 31 31 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46990 * 239.99977 * 2 1 3 33 33 H 1.09000 * 109.47320 * 120.00523 * 2 1 3 34 34 H 1.07998 * 120.02343 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.97195 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47060 * 210.00157 * 8 7 6 37 37 H 1.09001 * 109.47380 * 330.00244 * 8 7 6 38 38 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 39 39 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 40 40 H 1.08996 * 109.47220 * 90.00398 * 11 10 9 41 41 H 1.09001 * 109.46688 * 210.00173 * 11 10 9 42 42 H 1.08998 * 109.47230 * 329.99640 * 11 10 9 43 43 H 1.00905 * 110.99796 * 176.04835 * 16 14 12 44 44 H 1.00902 * 110.99207 * 299.99366 * 16 14 12 45 45 H 1.09000 * 109.47239 * 305.00443 * 17 14 12 46 46 H 1.09002 * 109.46768 * 64.99763 * 17 14 12 47 47 H 1.09001 * 109.47677 * 300.00013 * 18 17 14 48 48 H 1.09005 * 109.47281 * 60.00594 * 18 17 14 49 49 H 0.97003 * 120.00013 * 179.97438 * 22 21 19 50 50 H 1.07999 * 119.97190 * 179.70663 * 27 7 6 51 51 H 1.08001 * 120.03140 * 180.25189 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8068 0.0000 6 6 5.2551 2.9851 -0.0011 7 6 6.0963 1.8877 -0.0032 8 6 7.5903 2.0852 -0.0050 9 6 8.0978 2.1506 1.4368 10 7 9.5502 2.3420 1.4352 11 6 10.1107 3.6956 1.4356 12 6 10.3708 1.2729 1.4333 13 8 9.9068 0.1523 1.4334 14 6 11.8649 1.4697 1.4310 15 1 12.1212 2.2980 0.7704 16 7 12.5196 0.2436 0.9554 17 6 12.3402 1.7839 2.8509 18 6 13.8356 2.1062 2.8286 19 6 14.3038 2.4150 4.2273 20 1 13.6047 2.3841 5.0500 21 6 15.6247 2.7371 4.4568 22 7 16.0332 3.0071 5.6774 23 14 16.8337 2.7912 3.0338 24 1 16.8586 4.1595 2.4572 25 1 18.1899 2.4353 3.5228 26 1 16.4136 1.8218 1.9902 27 6 5.5690 0.6096 -0.0096 28 6 4.1999 0.4259 -0.0023 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2286 3.6642 0.0012 35 1 5.6693 3.9825 -0.0003 36 1 8.0664 1.2509 -0.5203 37 1 7.8332 3.0156 -0.5183 38 1 7.6216 2.9848 1.9521 39 1 7.8549 1.2203 1.9502 40 1 10.2510 4.0304 2.4634 41 1 11.0713 3.6912 0.9206 42 1 9.4268 4.3721 0.9232 43 1 13.5179 0.3714 0.8834 44 1 12.2973 -0.5394 1.5517 45 1 11.7894 2.6416 3.2370 46 1 12.1640 0.9204 3.4924 47 1 14.3865 1.2485 2.4426 48 1 14.0117 2.9697 2.1871 49 1 16.9625 3.2334 5.8389 50 1 6.2281 -0.2459 -0.0160 51 1 3.7885 -0.5727 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122407903.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:10 Heat of formation + Delta-G solvation = -84.602932 kcal Electronic energy + Delta-G solvation = -27940.720880 eV Core-core repulsion = 24031.857493 eV Total energy + Delta-G solvation = -3908.863387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30520 -40.99262 -38.89558 -37.26959 -36.75627 -34.82999 -33.84137 -32.43516 -32.07324 -31.82116 -29.56911 -28.27715 -27.38658 -25.82029 -24.95818 -23.93324 -22.93836 -22.07303 -21.66378 -20.11429 -19.24731 -19.01657 -18.41897 -17.42954 -17.05527 -16.99380 -16.55496 -16.27668 -16.03113 -15.89776 -15.58517 -15.33141 -15.01827 -14.70398 -14.59333 -14.50713 -14.43260 -14.25139 -13.93078 -13.80323 -13.65622 -13.43894 -13.36691 -13.23934 -12.90658 -12.71101 -12.63051 -12.52932 -12.40281 -12.07409 -11.97162 -11.83753 -11.66788 -11.61643 -11.60217 -11.39959 -10.76230 -10.68180 -9.96918 -9.78484 -9.62255 -9.01375 -8.28958 -6.34594 0.37749 0.40525 1.38866 1.41480 1.52367 1.61375 2.00050 2.25748 2.37195 2.76987 3.06758 3.53044 3.72178 3.79693 3.90711 3.96839 4.02502 4.03027 4.06184 4.15522 4.18658 4.28864 4.34076 4.38314 4.41934 4.46303 4.54399 4.59297 4.65379 4.69753 4.78057 4.87158 4.90646 4.91836 4.94238 5.01505 5.07121 5.14577 5.19120 5.32673 5.37705 5.38947 5.46906 5.58545 5.63360 5.69679 5.82970 6.04431 6.25885 6.37669 6.44545 6.48651 6.73806 7.18269 7.30347 8.87827 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.030325 B = 0.001735 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.113305 B =16131.291614 C =16304.299424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.112 3.888 5 C -0.160 4.160 6 C -0.072 4.072 7 C -0.123 4.123 8 C -0.078 4.078 9 C 0.122 3.878 10 N -0.613 5.613 11 C 0.066 3.934 12 C 0.520 3.480 13 O -0.572 6.572 14 C 0.079 3.921 15 H 0.121 0.879 16 N -0.831 5.831 17 C -0.117 4.117 18 C -0.005 4.005 19 C -0.535 4.535 20 H 0.025 0.975 21 C 0.004 3.996 22 N -0.953 5.953 23 Si 0.953 3.047 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.239 1.239 27 C -0.086 4.086 28 C -0.212 4.212 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.354 0.646 44 H 0.344 0.656 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.024 0.976 48 H 0.032 0.968 49 H 0.266 0.734 50 H 0.121 0.879 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.414 0.065 -16.738 32.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.247 6.247 4 C 0.066 3.934 5 C -0.179 4.179 6 C -0.090 4.090 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.001 4.001 10 N -0.345 5.345 11 C -0.076 4.076 12 C 0.308 3.692 13 O -0.451 6.451 14 C -0.036 4.036 15 H 0.138 0.862 16 N -0.363 5.363 17 C -0.157 4.157 18 C -0.042 4.042 19 C -0.573 4.573 20 H 0.043 0.957 21 C -0.193 4.193 22 N -0.593 5.593 23 Si 0.776 3.224 24 H -0.188 1.188 25 H -0.217 1.217 26 H -0.162 1.162 27 C -0.104 4.104 28 C -0.231 4.231 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.169 0.831 44 H 0.157 0.843 45 H 0.084 0.916 46 H 0.056 0.944 47 H 0.042 0.958 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.139 0.861 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.121 -0.233 -17.305 33.020 hybrid contribution 1.352 -0.377 1.265 1.890 sum -26.769 -0.610 -16.040 31.213 Atomic orbital electron populations 1.21800 0.91384 1.04128 1.03265 1.23025 0.96968 0.80951 1.02005 1.86044 1.18921 1.31022 1.88706 1.19230 0.82534 0.94690 0.96909 1.20684 0.95763 0.95022 1.06411 1.21119 0.91675 0.99491 0.96666 1.19759 0.95369 0.93317 1.03964 1.20749 0.90743 1.03227 0.96872 1.21498 0.78772 1.02916 0.96867 1.47924 1.06528 1.07126 1.72938 1.22166 1.00923 0.81495 1.03032 1.20830 0.89427 0.84263 0.74653 1.90613 1.78131 1.25270 1.51100 1.21503 0.90149 0.95423 0.96493 0.86153 1.58782 1.15425 1.04889 1.57156 1.22000 0.97791 1.00946 0.95001 1.19492 0.92802 0.96871 0.95047 1.21433 0.94884 1.46873 0.94086 0.95664 1.26069 1.00620 0.94020 0.98603 1.70087 1.17383 1.48991 1.22882 0.85613 0.77163 0.80058 0.79540 1.18774 1.21654 1.16203 1.21033 0.94571 0.97415 0.97405 1.21377 0.94110 0.98756 1.08860 0.91814 0.91678 0.88379 0.91374 0.91586 0.84020 0.82755 0.92746 0.88878 0.88110 0.92418 0.92181 0.90066 0.87782 0.83094 0.84347 0.91594 0.94420 0.95808 0.94939 0.92551 0.86120 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 71.98 0.74 -0.49 16 2 C 0.05 0.55 5.46 71.98 0.39 0.94 16 3 O -0.33 -6.09 10.14 -92.42 -0.94 -7.03 16 4 C 0.11 2.14 6.69 22.51 0.15 2.29 16 5 C -0.16 -2.74 9.99 22.37 0.22 -2.52 16 6 C -0.07 -1.11 9.69 22.25 0.22 -0.90 16 7 C -0.12 -2.29 5.13 -19.85 -0.10 -2.39 16 8 C -0.08 -1.45 5.67 29.85 0.17 -1.28 16 9 C 0.12 2.58 5.39 86.38 0.47 3.04 16 10 N -0.61 -14.64 2.87 -846.76 -2.43 -17.08 16 11 C 0.07 1.15 9.56 127.77 1.22 2.37 16 12 C 0.52 16.33 6.93 87.66 0.61 16.94 16 13 O -0.57 -21.84 15.83 -3.05 -0.05 -21.89 16 14 C 0.08 2.42 2.47 44.17 0.11 2.53 16 15 H 0.12 3.14 6.31 -2.38 -0.02 3.12 16 16 N -0.83 -25.81 8.94 -171.81 -1.54 -27.34 16 17 C -0.12 -4.33 4.71 30.59 0.14 -4.19 16 18 C 0.00 -0.20 3.81 29.85 0.11 -0.09 16 19 C -0.53 -29.84 9.66 25.60 0.25 -29.60 16 20 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 21 C 0.00 0.20 5.47 84.65 0.46 0.67 16 22 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 23 Si 0.95 42.13 27.47 68.60 1.88 44.01 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 27 C -0.09 -1.74 9.69 22.25 0.22 -1.53 16 28 C -0.21 -3.98 9.04 22.37 0.20 -3.78 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 33 H 0.07 0.73 7.67 -2.39 -0.02 0.71 16 34 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.05 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 38 H 0.10 1.64 8.07 -2.39 -0.02 1.62 16 39 H 0.06 1.54 7.42 -2.39 -0.02 1.52 16 40 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 41 H 0.08 1.39 5.94 -2.39 -0.01 1.37 16 42 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 43 H 0.35 10.33 7.55 -89.69 -0.68 9.65 16 44 H 0.34 11.29 8.58 -89.69 -0.77 10.52 16 45 H 0.07 2.37 6.94 -2.39 -0.02 2.36 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.02 0.99 5.93 -2.39 -0.01 0.97 16 48 H 0.03 1.29 7.57 -2.38 -0.02 1.27 16 49 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 51 H 0.14 2.09 6.30 -2.91 -0.02 2.07 16 Total: -1.00 -73.77 410.46 2.24 -71.53 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.57 Total: 34.43 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.58 Total: -17.97 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -3.67 Total: -103.09 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.99 Total: -28.92 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.01 kcal Total: -73.77 2.24 -71.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122407903.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.070 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds