Wall clock time and date at job start Tue Mar 31 2020 19:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47110 * 2 1 4 4 C 1.35909 * 117.00113 * 179.97438 * 3 2 1 5 5 C 1.38492 * 119.98470 * 0.28414 * 4 3 2 6 6 C 1.39488 * 119.79546 * 180.27195 * 5 4 3 7 7 C 1.47850 * 120.12300 * 179.72235 * 6 5 4 8 8 O 1.21558 * 119.99726 * 359.72538 * 7 6 5 9 9 N 1.34777 * 120.00468 * 179.73023 * 7 6 5 10 10 C 1.46495 * 120.00230 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47062 * 324.99175 * 10 9 7 12 12 C 1.52999 * 109.47657 * 84.99077 * 10 9 7 13 13 C 1.53002 * 109.47317 * 204.99663 * 10 9 7 14 14 C 1.53003 * 109.47269 * 64.99221 * 13 10 9 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 10 16 16 C 1.52996 * 109.47332 * 185.00423 * 14 13 10 17 17 N 1.46505 * 109.46807 * 65.00478 * 14 13 10 18 18 C 1.36931 * 119.99788 * 205.00000 * 17 14 13 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 14 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.39604 * 119.75898 * 359.44687 * 6 5 4 27 27 C 1.37964 * 119.96856 * 0.27779 * 26 6 5 28 28 C 1.38283 * 120.20622 * 359.97438 * 27 26 6 29 29 C 1.50697 * 119.88175 * 180.02562 * 28 27 26 30 30 H 1.08992 * 109.47228 * 299.99823 * 1 2 3 31 31 H 1.09004 * 109.46968 * 60.00203 * 1 2 3 32 32 H 1.08999 * 109.46450 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47375 * 240.00589 * 2 1 3 34 34 H 1.08999 * 109.47434 * 120.00359 * 2 1 3 35 35 H 1.08003 * 120.10496 * 359.97438 * 5 4 3 36 36 H 0.97000 * 119.99724 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46583 * 60.00443 * 12 10 9 38 38 H 1.09001 * 109.47265 * 179.97438 * 12 10 9 39 39 H 1.08991 * 109.47415 * 300.00577 * 12 10 9 40 40 H 1.09000 * 109.46766 * 304.99737 * 13 10 9 41 41 H 1.08992 * 109.47398 * 184.99831 * 13 10 9 42 42 H 1.08998 * 109.47099 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.46807 * 300.00318 * 16 14 13 44 44 H 1.08998 * 109.47019 * 59.99816 * 16 14 13 45 45 H 0.97000 * 119.99792 * 24.99795 * 17 14 13 46 46 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 47 47 H 1.08009 * 120.01534 * 180.29745 * 26 6 5 48 48 H 1.08001 * 119.89530 * 180.02562 * 27 26 6 49 49 H 1.09010 * 109.47131 * 89.99936 * 29 28 27 50 50 H 1.09000 * 109.47614 * 210.00115 * 29 28 27 51 51 H 1.08999 * 109.47463 * 330.00265 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1971 0.4269 -0.0049 6 6 5.5793 0.6142 0.0014 7 6 6.4864 -0.5534 0.0019 8 8 6.0278 -1.6792 0.0018 9 7 7.8215 -0.3696 0.0025 10 6 8.7202 -1.5265 0.0024 11 1 8.2781 -2.3301 0.5915 12 6 8.9343 -2.0061 -1.4346 13 6 10.0653 -1.1276 0.6127 14 6 9.8698 -0.7669 2.0867 15 1 9.1066 0.0065 2.1733 16 6 11.1885 -0.2492 2.6644 17 7 9.4455 -1.9570 2.8284 18 6 8.7321 -1.8218 3.9894 19 1 8.4819 -0.8380 4.3581 20 6 8.3251 -2.9495 4.6891 21 7 7.6348 -2.8197 5.8022 22 14 8.7572 -4.6512 4.0511 23 1 10.0627 -5.0754 4.6176 24 1 7.7038 -5.6150 4.4591 25 1 8.8487 -4.6157 2.5693 26 6 6.1032 1.9082 0.0015 27 6 5.2540 2.9955 0.0011 28 6 3.8839 2.8083 0.0001 29 6 2.9631 4.0012 -0.0009 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.7859 -0.5718 -0.0091 36 1 8.1874 0.5287 0.0023 37 1 9.3765 -1.2025 -2.0237 38 1 9.6033 -2.8666 -1.4347 39 1 7.9761 -2.2903 -1.8694 40 1 10.4657 -0.2663 0.0779 41 1 10.7625 -1.9615 0.5320 42 1 11.0493 0.0073 3.7146 43 1 11.9516 -1.0227 2.5777 44 1 11.5042 0.6361 2.1125 45 1 9.6698 -2.8406 2.4970 46 1 7.3507 -3.6077 6.2915 47 1 7.1729 2.0580 0.0015 48 1 5.6606 3.9961 0.0007 49 1 2.7419 4.2885 -1.0289 50 1 2.0362 3.7452 0.5123 51 1 3.4452 4.8328 0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135595687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:29 Heat of formation + Delta-G solvation = -52.176355 kcal Electronic energy + Delta-G solvation = -29447.835096 eV Core-core repulsion = 25540.377831 eV Total energy + Delta-G solvation = -3907.457265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59956 -39.43679 -37.56505 -36.83924 -34.58477 -33.21405 -32.09987 -31.80100 -30.83887 -29.75911 -29.20882 -27.23712 -26.39721 -24.30876 -23.32687 -22.76930 -21.87315 -21.03428 -20.33419 -19.80648 -18.57654 -17.55242 -16.52991 -16.37331 -16.27870 -15.74943 -15.33594 -14.89137 -14.60629 -14.27394 -14.07661 -13.87464 -13.78909 -13.65206 -13.44735 -13.07339 -12.90400 -12.77788 -12.63285 -12.40917 -12.39374 -12.12731 -12.03605 -11.96722 -11.77135 -11.70034 -11.51767 -11.21142 -11.10955 -10.91154 -10.86604 -10.65151 -10.46973 -10.25758 -9.93837 -9.66257 -9.52448 -8.96246 -8.87282 -8.75456 -8.24944 -7.20520 -5.70258 -3.05038 0.81643 1.30511 2.99688 3.02893 3.35760 3.43164 3.45907 3.50954 3.88146 4.59443 4.64606 4.65887 4.76095 4.81244 4.90727 4.99281 5.02970 5.08863 5.11493 5.25867 5.30634 5.33190 5.49114 5.50486 5.52838 5.54548 5.59656 5.60642 5.68260 5.77488 5.80813 5.82280 5.88020 5.97719 6.01645 6.12038 6.19352 6.23720 6.27661 6.29327 6.34366 6.43950 6.55363 6.58921 6.75292 6.84576 7.00244 7.24944 7.74744 8.05004 8.48031 8.48739 9.27127 10.00007 10.19085 11.48402 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003399 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.004384 B = 8236.422543 C = 9193.308317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.313 6.313 4 C 0.121 3.879 5 C -0.146 4.146 6 C -0.091 4.091 7 C 0.559 3.441 8 O -0.532 6.532 9 N -0.710 5.710 10 C 0.142 3.858 11 H 0.101 0.899 12 C -0.162 4.162 13 C -0.135 4.135 14 C 0.176 3.824 15 H 0.054 0.946 16 C -0.165 4.165 17 N -0.745 5.745 18 C -0.237 4.237 19 H 0.088 0.912 20 C 0.005 3.995 21 N -0.935 5.935 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.276 1.276 26 C -0.119 4.119 27 C -0.092 4.092 28 C -0.098 4.098 29 C -0.106 4.106 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.141 0.859 36 H 0.395 0.605 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.037 0.963 45 H 0.360 0.640 46 H 0.258 0.742 47 H 0.128 0.872 48 H 0.134 0.866 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 12.411 -17.572 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.227 6.227 4 C 0.075 3.925 5 C -0.166 4.166 6 C -0.094 4.094 7 C 0.346 3.654 8 O -0.409 6.409 9 N -0.361 5.361 10 C 0.038 3.962 11 H 0.119 0.881 12 C -0.220 4.220 13 C -0.173 4.173 14 C 0.067 3.933 15 H 0.072 0.928 16 C -0.225 4.225 17 N -0.388 5.388 18 C -0.367 4.367 19 H 0.105 0.895 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.203 1.203 26 C -0.138 4.138 27 C -0.110 4.110 28 C -0.099 4.099 29 C -0.163 4.163 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.230 0.770 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.192 0.808 46 H 0.068 0.932 47 H 0.146 0.854 48 H 0.152 0.848 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.672 11.800 -17.368 22.032 hybrid contribution 0.657 -1.183 -0.181 1.365 sum -6.015 10.617 -17.549 21.375 Atomic orbital electron populations 1.21759 0.92648 1.02950 1.03299 1.22855 0.95863 0.81773 1.02056 1.86032 1.18463 1.29463 1.88727 1.18634 0.82568 0.93240 0.98011 1.21334 0.92837 0.98976 1.03429 1.19774 0.93436 0.93398 1.02832 1.18144 0.82389 0.88510 0.76368 1.90771 1.76327 1.24584 1.49238 1.45842 1.05483 1.09917 1.74851 1.21032 0.89990 0.89207 0.95937 0.88117 1.22192 1.01967 1.01040 0.96792 1.22226 0.95750 1.01835 0.97536 1.20202 0.94318 0.90523 0.88292 0.92779 1.22420 0.99236 0.99188 1.01699 1.42771 1.66626 1.02280 1.27156 1.19011 1.25714 0.94757 0.97239 0.89456 1.24633 1.00116 0.97168 0.97092 1.69696 1.42675 1.28573 1.17384 0.86575 0.77623 0.86064 0.78450 1.21288 1.21859 1.20252 1.21180 0.99926 0.91462 1.01220 1.20785 0.91564 0.99080 0.99522 1.19414 0.94376 0.92571 1.03576 1.20643 0.98724 0.94624 1.02273 0.91492 0.91686 0.90292 0.91858 0.91494 0.84129 0.76984 0.92865 0.91799 0.92404 0.91514 0.90655 0.92395 0.93627 0.94356 0.80768 0.93200 0.85435 0.84813 0.91298 0.91002 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.31 -3.85 9.16 -19.46 -0.18 -4.02 16 4 C 0.12 1.60 6.65 -39.28 -0.26 1.34 16 5 C -0.15 -2.16 8.58 -39.02 -0.33 -2.50 16 6 C -0.09 -1.36 5.87 -104.99 -0.62 -1.98 16 7 C 0.56 9.72 7.74 -12.33 -0.10 9.62 16 8 O -0.53 -11.34 16.01 5.31 0.09 -11.25 16 9 N -0.71 -10.47 4.40 -54.75 -0.24 -10.71 16 10 C 0.14 2.23 2.52 -67.93 -0.17 2.06 16 11 H 0.10 2.05 7.05 -51.93 -0.37 1.68 16 12 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 13 C -0.13 -1.92 4.29 -26.73 -0.11 -2.04 16 14 C 0.18 3.21 2.84 -67.93 -0.19 3.02 16 15 H 0.05 1.04 7.56 -51.93 -0.39 0.64 16 16 C -0.17 -2.76 9.49 37.16 0.35 -2.41 16 17 N -0.75 -17.43 4.30 -53.42 -0.23 -17.66 16 18 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 21 N -0.94 -30.12 13.97 55.49 0.78 -29.35 16 22 Si 0.88 22.93 27.74 -169.99 -4.72 18.21 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.28 -6.80 6.51 56.52 0.37 -6.43 16 26 C -0.12 -1.40 9.54 -39.17 -0.37 -1.78 16 27 C -0.09 -0.96 9.67 -39.67 -0.38 -1.35 16 28 C -0.10 -1.13 5.90 -104.39 -0.62 -1.75 16 29 C -0.11 -0.94 9.78 36.00 0.35 -0.59 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 34 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 35 H 0.14 2.14 5.88 -52.48 -0.31 1.83 16 36 H 0.40 4.60 6.63 -40.82 -0.27 4.33 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.36 8.39 5.66 -40.82 -0.23 8.16 16 46 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 47 H 0.13 1.18 6.40 -52.48 -0.34 0.84 16 48 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 49 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 50 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 51 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 412.54 15.07 6.22 6.22 Total: -1.00 -35.48 412.54 -8.65 -44.14 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -8.60 Total: 11.46 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.77 Total: -7.04 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.30 Total: -57.71 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.09 Total: -15.28 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.72 Total: 18.21 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.48 -8.65 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135595687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.040 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds