Wall clock time and date at job start Tue Mar 31 2020 19:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47110 * 2 1 4 4 C 1.35909 * 117.00113 * 179.97438 * 3 2 1 5 5 C 1.38492 * 119.98470 * 0.28414 * 4 3 2 6 6 C 1.39488 * 119.79546 * 180.27195 * 5 4 3 7 7 C 1.47850 * 120.12300 * 179.72235 * 6 5 4 8 8 O 1.21558 * 119.99726 * 359.72538 * 7 6 5 9 9 N 1.34777 * 120.00468 * 179.73023 * 7 6 5 10 10 C 1.46495 * 120.00230 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47062 * 324.99175 * 10 9 7 12 12 C 1.52999 * 109.47657 * 84.99077 * 10 9 7 13 13 C 1.53002 * 109.47317 * 204.99663 * 10 9 7 14 14 C 1.53003 * 109.47269 * 64.99221 * 13 10 9 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 10 16 16 C 1.52996 * 109.47332 * 185.00423 * 14 13 10 17 17 N 1.46505 * 109.46807 * 65.00478 * 14 13 10 18 18 C 1.36931 * 119.99788 * 205.00000 * 17 14 13 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 14 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.39604 * 119.75898 * 359.44687 * 6 5 4 27 27 C 1.37964 * 119.96856 * 0.27779 * 26 6 5 28 28 C 1.38283 * 120.20622 * 359.97438 * 27 26 6 29 29 C 1.50697 * 119.88175 * 180.02562 * 28 27 26 30 30 H 1.08992 * 109.47228 * 299.99823 * 1 2 3 31 31 H 1.09004 * 109.46968 * 60.00203 * 1 2 3 32 32 H 1.08999 * 109.46450 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47375 * 240.00589 * 2 1 3 34 34 H 1.08999 * 109.47434 * 120.00359 * 2 1 3 35 35 H 1.08003 * 120.10496 * 359.97438 * 5 4 3 36 36 H 0.97000 * 119.99724 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46583 * 60.00443 * 12 10 9 38 38 H 1.09001 * 109.47265 * 179.97438 * 12 10 9 39 39 H 1.08991 * 109.47415 * 300.00577 * 12 10 9 40 40 H 1.09000 * 109.46766 * 304.99737 * 13 10 9 41 41 H 1.08992 * 109.47398 * 184.99831 * 13 10 9 42 42 H 1.08998 * 109.47099 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.46807 * 300.00318 * 16 14 13 44 44 H 1.08998 * 109.47019 * 59.99816 * 16 14 13 45 45 H 0.97000 * 119.99792 * 24.99795 * 17 14 13 46 46 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 47 47 H 1.08009 * 120.01534 * 180.29745 * 26 6 5 48 48 H 1.08001 * 119.89530 * 180.02562 * 27 26 6 49 49 H 1.09010 * 109.47131 * 89.99936 * 29 28 27 50 50 H 1.09000 * 109.47614 * 210.00115 * 29 28 27 51 51 H 1.08999 * 109.47463 * 330.00265 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1971 0.4269 -0.0049 6 6 5.5793 0.6142 0.0014 7 6 6.4864 -0.5534 0.0019 8 8 6.0278 -1.6792 0.0018 9 7 7.8215 -0.3696 0.0025 10 6 8.7202 -1.5265 0.0024 11 1 8.2781 -2.3301 0.5915 12 6 8.9343 -2.0061 -1.4346 13 6 10.0653 -1.1276 0.6127 14 6 9.8698 -0.7669 2.0867 15 1 9.1066 0.0065 2.1733 16 6 11.1885 -0.2492 2.6644 17 7 9.4455 -1.9570 2.8284 18 6 8.7321 -1.8218 3.9894 19 1 8.4819 -0.8380 4.3581 20 6 8.3251 -2.9495 4.6891 21 7 7.6348 -2.8197 5.8022 22 14 8.7572 -4.6512 4.0511 23 1 10.0627 -5.0754 4.6176 24 1 7.7038 -5.6150 4.4591 25 1 8.8487 -4.6157 2.5693 26 6 6.1032 1.9082 0.0015 27 6 5.2540 2.9955 0.0011 28 6 3.8839 2.8083 0.0001 29 6 2.9631 4.0012 -0.0009 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.7859 -0.5718 -0.0091 36 1 8.1874 0.5287 0.0023 37 1 9.3765 -1.2025 -2.0237 38 1 9.6033 -2.8666 -1.4347 39 1 7.9761 -2.2903 -1.8694 40 1 10.4657 -0.2663 0.0779 41 1 10.7625 -1.9615 0.5320 42 1 11.0493 0.0073 3.7146 43 1 11.9516 -1.0227 2.5777 44 1 11.5042 0.6361 2.1125 45 1 9.6698 -2.8406 2.4970 46 1 7.3507 -3.6077 6.2915 47 1 7.1729 2.0580 0.0015 48 1 5.6606 3.9961 0.0007 49 1 2.7419 4.2885 -1.0289 50 1 2.0362 3.7452 0.5123 51 1 3.4452 4.8328 0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135595687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:28 Heat of formation + Delta-G solvation = -75.662750 kcal Electronic energy + Delta-G solvation = -29448.853542 eV Core-core repulsion = 25540.377831 eV Total energy + Delta-G solvation = -3908.475712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.65379 -40.62167 -38.66270 -38.18814 -36.18441 -34.31785 -33.94311 -32.61158 -32.18590 -31.01158 -30.66316 -28.16170 -27.60007 -25.38725 -25.15280 -23.85045 -22.86212 -22.15817 -21.60264 -21.27327 -19.89315 -19.43917 -17.63012 -17.51790 -17.18739 -16.92866 -16.63062 -16.32238 -16.10435 -15.78402 -15.27162 -15.18337 -14.76600 -14.76063 -14.62455 -14.48677 -14.29791 -14.04080 -13.62511 -13.47463 -13.44040 -13.29403 -13.18009 -13.00997 -12.86152 -12.80587 -12.69923 -12.62377 -12.40565 -12.35412 -12.07069 -11.99798 -11.87905 -11.75534 -11.69497 -11.45779 -11.02518 -10.95749 -10.12903 -9.85821 -9.27692 -9.21521 -8.02531 -5.32370 -0.23745 0.34412 1.31643 1.36883 1.42140 1.81974 2.10371 2.21319 2.46786 2.79362 3.30549 3.57427 3.64979 3.73515 3.82677 3.92924 3.94736 4.01490 4.07279 4.12432 4.21047 4.30033 4.33571 4.48874 4.50508 4.64671 4.70518 4.72588 4.76066 4.81415 4.82952 4.86911 4.88208 4.89812 4.99165 5.08412 5.10382 5.17477 5.22883 5.24714 5.28322 5.31915 5.37179 5.41877 5.57028 5.61592 5.72198 5.79152 6.22479 6.28712 6.55942 7.10429 7.24001 7.89467 8.04845 9.19847 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003399 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.004384 B = 8236.422543 C = 9193.308317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 O -0.317 6.317 4 C 0.105 3.895 5 C -0.169 4.169 6 C -0.120 4.120 7 C 0.550 3.450 8 O -0.587 6.587 9 N -0.696 5.696 10 C 0.139 3.861 11 H 0.047 0.953 12 C -0.152 4.152 13 C -0.121 4.121 14 C 0.165 3.835 15 H 0.042 0.958 16 C -0.157 4.157 17 N -0.749 5.749 18 C -0.213 4.213 19 H 0.053 0.947 20 C -0.068 4.068 21 N -0.988 5.988 22 Si 0.948 3.052 23 H -0.273 1.273 24 H -0.304 1.304 25 H -0.257 1.257 26 C -0.112 4.112 27 C -0.084 4.084 28 C -0.098 4.098 29 C -0.104 4.104 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.412 0.588 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.362 0.638 46 H 0.254 0.746 47 H 0.157 0.843 48 H 0.176 0.824 49 H 0.084 0.916 50 H 0.062 0.938 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 14.827 -20.191 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.231 6.231 4 C 0.060 3.940 5 C -0.189 4.189 6 C -0.123 4.123 7 C 0.339 3.661 8 O -0.469 6.469 9 N -0.347 5.347 10 C 0.035 3.965 11 H 0.066 0.934 12 C -0.210 4.210 13 C -0.159 4.159 14 C 0.058 3.942 15 H 0.060 0.940 16 C -0.216 4.216 17 N -0.393 5.393 18 C -0.344 4.344 19 H 0.071 0.929 20 C -0.259 4.259 21 N -0.639 5.639 22 Si 0.776 3.224 23 H -0.199 1.199 24 H -0.231 1.231 25 H -0.182 1.182 26 C -0.130 4.130 27 C -0.102 4.102 28 C -0.099 4.099 29 C -0.160 4.160 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.138 0.862 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.194 0.806 46 H 0.063 0.937 47 H 0.175 0.825 48 H 0.193 0.807 49 H 0.102 0.898 50 H 0.081 0.919 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.444 14.279 -20.044 25.008 hybrid contribution -0.036 -1.757 0.613 1.862 sum -4.480 12.521 -19.431 23.546 Atomic orbital electron populations 1.21766 0.90351 1.04106 1.03749 1.22993 0.97630 0.81161 1.01267 1.86025 1.18119 1.30204 1.88732 1.18878 0.82748 0.93715 0.98650 1.21312 0.93566 0.98819 1.05204 1.19758 0.93008 0.93984 1.05540 1.18653 0.83414 0.88554 0.75502 1.90729 1.77337 1.26793 1.52040 1.45741 1.04639 1.10777 1.73580 1.20988 0.90312 0.88131 0.97068 0.93426 1.22096 1.01358 1.02581 0.94946 1.22158 0.95043 1.04284 0.94396 1.20533 0.94725 0.88355 0.90590 0.94016 1.22276 0.98059 1.01133 1.00138 1.42834 1.66136 1.04298 1.26005 1.18973 1.24206 0.93075 0.98188 0.92872 1.25418 1.01266 1.01420 0.97773 1.69877 1.45294 1.29357 1.19411 0.85498 0.77271 0.80697 0.78890 1.19915 1.23118 1.18209 1.21517 1.01688 0.90216 0.99606 1.21268 0.90853 1.00496 0.97571 1.19920 0.95607 0.92592 1.01777 1.20713 0.97916 0.93990 1.03418 0.91434 0.90736 0.88804 0.91957 0.93160 0.86236 0.74929 0.89669 0.90555 0.94624 0.86765 0.89353 0.95596 0.92953 0.90056 0.80556 0.93734 0.82547 0.80676 0.89790 0.91884 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.04 1.00 5.46 71.98 0.39 1.40 16 3 O -0.32 -8.06 9.16 -92.53 -0.85 -8.90 16 4 C 0.11 2.86 6.65 22.47 0.15 3.01 16 5 C -0.17 -5.37 8.58 22.63 0.19 -5.18 16 6 C -0.12 -3.67 5.87 -20.10 -0.12 -3.79 16 7 C 0.55 19.86 7.74 86.79 0.67 20.53 16 8 O -0.59 -26.96 16.01 -3.90 -0.06 -27.02 16 9 N -0.70 -19.86 4.40 -445.40 -1.96 -21.82 16 10 C 0.14 4.17 2.52 44.99 0.11 4.28 16 11 H 0.05 1.97 7.05 -2.38 -0.02 1.95 16 12 C -0.15 -3.62 9.48 71.98 0.68 -2.94 16 13 C -0.12 -2.99 4.29 30.60 0.13 -2.86 16 14 C 0.17 5.70 2.84 44.99 0.13 5.83 16 15 H 0.04 1.54 7.56 -2.39 -0.02 1.53 16 16 C -0.16 -4.75 9.49 71.98 0.68 -4.07 16 17 N -0.75 -34.85 4.30 -322.93 -1.39 -36.23 16 18 C -0.21 -12.48 10.41 84.04 0.87 -11.60 16 19 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.99 -66.41 13.97 21.65 0.30 -66.11 16 22 Si 0.95 48.57 27.74 68.60 1.90 50.48 16 23 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.30 -16.06 7.11 99.48 0.71 -15.35 16 25 H -0.26 -12.17 6.51 99.48 0.65 -11.53 16 26 C -0.11 -2.41 9.54 22.53 0.21 -2.19 16 27 C -0.08 -1.51 9.67 22.22 0.21 -1.30 16 28 C -0.10 -2.09 5.90 -19.72 -0.12 -2.21 16 29 C -0.10 -1.57 9.78 71.24 0.70 -0.88 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.38 7.65 -2.39 -0.02 1.36 16 34 H 0.05 1.27 7.67 -2.39 -0.02 1.25 16 35 H 0.12 4.15 5.88 -2.91 -0.02 4.13 16 36 H 0.41 8.47 6.63 -92.71 -0.61 7.85 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.36 16.51 5.66 -92.71 -0.52 15.99 16 46 H 0.25 16.38 8.31 -92.71 -0.77 15.61 16 47 H 0.16 2.32 6.40 -2.91 -0.02 2.30 16 48 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 49 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.06 1.09 7.52 -2.39 -0.02 1.07 16 51 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 Total: -1.00 -84.67 412.54 3.80 -80.87 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.27 Total: 35.96 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 6.12 Total: -7.23 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -3.04 Total: -124.16 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.91 Total: -35.92 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.90 Total: 50.48 kcal Total: -84.67 3.80 -80.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135595687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.209 kcal (2) G-P(sol) polarization free energy of solvation -84.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds