Wall clock time and date at job start Tue Mar 31 2020 19:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47302 * 2 1 4 4 C 1.35705 * 117.00222 * 179.97438 * 3 2 1 5 5 C 1.39023 * 119.91245 * 0.02562 * 4 3 2 6 6 C 1.37680 * 120.08591 * 179.76268 * 5 4 3 7 7 C 1.39747 * 119.91310 * 0.44529 * 6 5 4 8 8 C 1.47603 * 120.08566 * 179.80619 * 7 6 5 9 9 O 1.21588 * 119.99672 * 179.72380 * 8 7 6 10 10 N 1.34777 * 120.00404 * 359.73300 * 8 7 6 11 11 C 1.46495 * 120.00230 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47062 * 324.99175 * 11 10 8 13 13 C 1.52999 * 109.47657 * 84.99077 * 11 10 8 14 14 C 1.53002 * 109.47317 * 204.99663 * 11 10 8 15 15 C 1.53003 * 109.47269 * 64.99221 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.39715 * 119.82745 * 359.53727 * 7 6 5 28 28 C 1.37728 * 119.90453 * 0.24921 * 27 7 6 29 29 C 1.50698 * 119.95020 * 179.97438 * 28 27 7 30 30 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46917 * 299.99676 * 1 2 3 32 32 H 1.09000 * 109.46846 * 60.00087 * 1 2 3 33 33 H 1.09003 * 109.47080 * 240.00171 * 2 1 3 34 34 H 1.09001 * 109.47166 * 120.00353 * 2 1 3 35 35 H 1.07997 * 119.95464 * 0.02562 * 5 4 3 36 36 H 1.08006 * 120.03934 * 180.23276 * 6 5 4 37 37 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 38 38 H 1.08991 * 109.47415 * 300.00577 * 13 11 10 39 39 H 1.09005 * 109.46583 * 60.00443 * 13 11 10 40 40 H 1.09001 * 109.47265 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.46766 * 304.99737 * 14 11 10 42 42 H 1.08992 * 109.47398 * 184.99831 * 14 11 10 43 43 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 44 44 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 45 45 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 46 46 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 48 48 H 1.07995 * 120.04608 * 180.23017 * 27 7 6 49 49 H 1.08999 * 109.46887 * 90.00149 * 29 28 27 50 50 H 1.08998 * 109.47224 * 209.99537 * 29 28 27 51 51 H 1.08998 * 109.47417 * 330.00123 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5251 0.0005 5 6 4.1970 0.4213 0.0005 6 6 5.5624 0.5976 -0.0039 7 6 6.0985 1.8881 0.0011 8 6 7.5618 2.0815 0.0008 9 8 8.0265 3.2050 0.0000 10 7 8.3829 1.0127 0.0011 11 6 9.8352 1.2046 0.0013 12 1 10.0852 2.0866 -0.5884 13 6 10.3242 1.3965 1.4383 14 6 10.5123 -0.0248 -0.6080 15 6 10.1200 -0.1451 -2.0819 16 1 9.0335 -0.1594 -2.1687 17 6 10.6948 -1.4405 -2.6586 18 7 10.6542 0.9993 -2.8244 19 6 10.0518 1.4034 -3.9858 20 1 9.1827 0.8788 -4.3543 21 6 10.5546 2.4913 -4.6863 22 7 11.6134 3.1310 -4.2370 23 14 9.7282 3.0475 -6.2666 24 1 8.6803 4.0510 -5.9506 25 1 10.7404 3.6556 -7.1670 26 1 9.1070 1.8778 -6.9384 27 6 5.2458 2.9949 0.0007 28 6 3.8810 2.8101 0.0007 29 6 2.9603 4.0031 0.0008 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.7819 -0.5757 -0.0003 36 1 6.2183 -0.2605 -0.0077 37 1 8.0121 0.1163 0.0019 38 1 9.8419 2.2723 1.8723 39 1 10.0743 0.5145 2.0279 40 1 11.4049 1.5389 1.4384 41 1 10.1920 -0.9186 -0.0726 42 1 11.5943 0.0789 -0.5272 43 1 10.4157 -1.5259 -3.7087 44 1 11.7813 -1.4261 -2.5717 45 1 10.2974 -2.2919 -2.1061 46 1 11.4346 1.4707 -2.4933 47 1 11.9650 3.8910 -4.7267 48 1 5.6563 3.9937 0.0008 49 1 2.7383 4.2909 -1.0268 50 1 2.0337 3.7469 0.5145 51 1 3.4428 4.8344 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135600934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:42 Heat of formation + Delta-G solvation = -55.988946 kcal Electronic energy + Delta-G solvation = -29213.556580 eV Core-core repulsion = 25305.933989 eV Total energy + Delta-G solvation = -3907.622591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.62520 -39.45806 -37.55485 -36.58283 -34.42774 -33.31109 -32.06260 -31.92377 -30.85875 -29.67337 -28.54436 -26.86690 -26.27689 -24.54438 -23.61779 -23.29455 -21.52735 -21.00785 -20.05165 -19.67255 -18.35666 -17.45646 -16.97570 -16.48366 -16.44943 -15.53059 -14.82667 -14.79285 -14.49949 -14.24135 -13.98216 -13.87554 -13.81299 -13.57362 -13.30706 -13.02206 -12.95576 -12.92794 -12.69063 -12.54180 -12.12882 -12.11151 -11.97687 -11.83566 -11.76381 -11.69303 -11.55804 -11.05118 -10.96060 -10.93711 -10.77026 -10.56919 -10.36611 -10.17745 -9.84943 -9.57012 -9.52511 -8.99737 -8.82339 -8.66640 -8.24013 -6.86374 -5.67432 -2.95096 0.91890 1.20373 2.88161 3.04411 3.49334 3.50284 3.54717 3.56021 3.93708 4.47030 4.54097 4.56860 4.67494 4.71138 4.85202 4.89263 5.02512 5.12254 5.18211 5.22740 5.39407 5.43262 5.45189 5.51071 5.54040 5.60533 5.64213 5.67009 5.74240 5.76728 5.93642 5.99314 6.01857 6.05702 6.10119 6.15587 6.17894 6.32570 6.33495 6.41427 6.49694 6.58604 6.61588 6.77788 6.86925 6.98767 7.11318 7.14683 7.77819 7.87851 8.50963 8.62731 9.62365 10.19698 10.53957 11.55381 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.003157 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.843080 B = 8866.387572 C = 9758.805134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.311 6.311 4 C 0.148 3.852 5 C -0.214 4.214 6 C -0.050 4.050 7 C -0.159 4.159 8 C 0.561 3.439 9 O -0.532 6.532 10 N -0.713 5.713 11 C 0.144 3.856 12 H 0.107 0.893 13 C -0.161 4.161 14 C -0.131 4.131 15 C 0.171 3.829 16 H 0.045 0.955 17 C -0.165 4.165 18 N -0.720 5.720 19 C -0.233 4.233 20 H 0.066 0.934 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.284 1.284 27 C -0.023 4.023 28 C -0.127 4.127 29 C -0.103 4.103 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.391 0.609 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.033 0.967 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.143 0.857 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.356 -9.160 13.978 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.102 3.898 5 C -0.233 4.233 6 C -0.069 4.069 7 C -0.162 4.162 8 C 0.348 3.652 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.040 3.960 12 H 0.124 0.876 13 C -0.219 4.219 14 C -0.170 4.170 15 C 0.061 3.939 16 H 0.063 0.937 17 C -0.225 4.225 18 N -0.361 5.361 19 C -0.364 4.364 20 H 0.084 0.916 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.733 3.267 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.042 4.042 28 C -0.127 4.127 29 C -0.160 4.160 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.226 0.774 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.161 0.839 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.260 -8.177 13.821 24.317 hybrid contribution -0.175 -0.404 -0.946 1.044 sum -18.436 -8.582 12.875 24.068 Atomic orbital electron populations 1.21775 0.92680 1.02885 1.03560 1.22830 0.95923 0.81957 1.01611 1.86021 1.18989 1.29330 1.88071 1.18994 0.82224 0.93613 0.94980 1.21098 0.94013 0.98027 1.10145 1.21056 0.94548 0.96225 0.95103 1.19949 0.93668 0.93862 1.08724 1.18034 0.85831 0.84974 0.76397 1.90795 1.77229 1.23521 1.49357 1.45865 1.07033 1.08332 1.75130 1.21037 0.78204 1.00918 0.95844 0.87552 1.22183 1.01434 1.01387 0.96890 1.22173 1.01081 0.96286 0.97430 1.20220 0.96632 0.88233 0.88785 0.93691 1.22459 1.00842 0.98063 1.01181 1.42384 1.34907 1.32883 1.25957 1.19145 1.08598 1.09772 0.98919 0.91572 1.24688 0.98253 0.98611 0.99249 1.69646 1.24755 1.23163 1.40427 0.86267 0.78436 0.78489 0.83482 1.21755 1.21858 1.20935 1.21038 0.90856 0.99448 0.92843 1.19201 0.93987 0.92704 1.06847 1.20602 0.98248 0.94620 1.02533 0.90350 0.91530 0.91445 0.91786 0.91914 0.85069 0.85389 0.77412 0.92486 0.93217 0.91731 0.92142 0.90580 0.92926 0.93526 0.94779 0.78337 0.93630 0.83908 0.91233 0.91245 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.43 16 2 C 0.05 0.37 5.45 37.16 0.20 0.57 16 3 O -0.31 -3.23 9.16 -18.82 -0.17 -3.40 16 4 C 0.15 1.73 6.67 -39.02 -0.26 1.47 16 5 C -0.21 -2.29 9.01 -39.49 -0.36 -2.64 16 6 C -0.05 -0.60 9.53 -39.22 -0.37 -0.97 16 7 C -0.16 -2.35 5.87 -104.96 -0.62 -2.97 16 8 C 0.56 9.93 7.73 -12.44 -0.10 9.83 16 9 O -0.53 -11.66 16.00 5.29 0.08 -11.58 16 10 N -0.71 -10.92 4.40 -54.83 -0.24 -11.16 16 11 C 0.14 2.39 2.52 -67.93 -0.17 2.22 16 12 H 0.11 2.32 7.05 -51.93 -0.37 1.96 16 13 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 14 C -0.13 -2.02 4.29 -26.73 -0.11 -2.14 16 15 C 0.17 3.28 2.84 -67.93 -0.19 3.09 16 16 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 17 C -0.17 -2.91 9.49 37.16 0.35 -2.55 16 18 N -0.72 -17.90 4.49 -53.42 -0.24 -18.14 16 19 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 23 Si 0.90 23.29 29.55 -169.99 -5.02 18.27 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 C -0.02 -0.33 9.23 -39.22 -0.36 -0.69 16 28 C -0.13 -1.59 5.89 -104.54 -0.62 -2.21 16 29 C -0.10 -1.07 9.78 36.00 0.35 -0.72 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 34 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 35 H 0.13 1.04 6.28 -52.49 -0.33 0.71 16 36 H 0.13 1.19 6.40 -52.48 -0.34 0.86 16 37 H 0.39 4.77 6.63 -40.82 -0.27 4.50 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 47 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.14 2.11 7.64 -52.49 -0.40 1.71 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 51 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 415.59 15.07 6.26 6.26 Total: -1.00 -34.54 415.59 -9.00 -43.54 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -8.64 Total: 11.57 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.76 Total: -7.22 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.24 Total: -57.43 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.09 Total: -14.98 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.54 -9.00 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135600934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.448 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds