Wall clock time and date at job start Tue Mar 31 2020 19:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47302 * 2 1 4 4 C 1.35705 * 117.00222 * 179.97438 * 3 2 1 5 5 C 1.39023 * 119.91245 * 0.02562 * 4 3 2 6 6 C 1.37680 * 120.08591 * 179.76268 * 5 4 3 7 7 C 1.39747 * 119.91310 * 0.44529 * 6 5 4 8 8 C 1.47603 * 120.08566 * 179.80619 * 7 6 5 9 9 O 1.21588 * 119.99672 * 179.72380 * 8 7 6 10 10 N 1.34777 * 120.00404 * 359.73300 * 8 7 6 11 11 C 1.46495 * 120.00230 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47062 * 324.99175 * 11 10 8 13 13 C 1.52999 * 109.47657 * 84.99077 * 11 10 8 14 14 C 1.53002 * 109.47317 * 204.99663 * 11 10 8 15 15 C 1.53003 * 109.47269 * 64.99221 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.39715 * 119.82745 * 359.53727 * 7 6 5 28 28 C 1.37728 * 119.90453 * 0.24921 * 27 7 6 29 29 C 1.50698 * 119.95020 * 179.97438 * 28 27 7 30 30 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46917 * 299.99676 * 1 2 3 32 32 H 1.09000 * 109.46846 * 60.00087 * 1 2 3 33 33 H 1.09003 * 109.47080 * 240.00171 * 2 1 3 34 34 H 1.09001 * 109.47166 * 120.00353 * 2 1 3 35 35 H 1.07997 * 119.95464 * 0.02562 * 5 4 3 36 36 H 1.08006 * 120.03934 * 180.23276 * 6 5 4 37 37 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 38 38 H 1.08991 * 109.47415 * 300.00577 * 13 11 10 39 39 H 1.09005 * 109.46583 * 60.00443 * 13 11 10 40 40 H 1.09001 * 109.47265 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.46766 * 304.99737 * 14 11 10 42 42 H 1.08992 * 109.47398 * 184.99831 * 14 11 10 43 43 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 44 44 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 45 45 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 46 46 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 48 48 H 1.07995 * 120.04608 * 180.23017 * 27 7 6 49 49 H 1.08999 * 109.46887 * 90.00149 * 29 28 27 50 50 H 1.08998 * 109.47224 * 209.99537 * 29 28 27 51 51 H 1.08998 * 109.47417 * 330.00123 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5251 0.0005 5 6 4.1970 0.4213 0.0005 6 6 5.5624 0.5976 -0.0039 7 6 6.0985 1.8881 0.0011 8 6 7.5618 2.0815 0.0008 9 8 8.0265 3.2050 0.0000 10 7 8.3829 1.0127 0.0011 11 6 9.8352 1.2046 0.0013 12 1 10.0852 2.0866 -0.5884 13 6 10.3242 1.3965 1.4383 14 6 10.5123 -0.0248 -0.6080 15 6 10.1200 -0.1451 -2.0819 16 1 9.0335 -0.1594 -2.1687 17 6 10.6948 -1.4405 -2.6586 18 7 10.6542 0.9993 -2.8244 19 6 10.0518 1.4034 -3.9858 20 1 9.1827 0.8788 -4.3543 21 6 10.5546 2.4913 -4.6863 22 7 11.6134 3.1310 -4.2370 23 14 9.7282 3.0475 -6.2666 24 1 8.6803 4.0510 -5.9506 25 1 10.7404 3.6556 -7.1670 26 1 9.1070 1.8778 -6.9384 27 6 5.2458 2.9949 0.0007 28 6 3.8810 2.8101 0.0007 29 6 2.9603 4.0031 0.0008 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.7819 -0.5757 -0.0003 36 1 6.2183 -0.2605 -0.0077 37 1 8.0121 0.1163 0.0019 38 1 9.8419 2.2723 1.8723 39 1 10.0743 0.5145 2.0279 40 1 11.4049 1.5389 1.4384 41 1 10.1920 -0.9186 -0.0726 42 1 11.5943 0.0789 -0.5272 43 1 10.4157 -1.5259 -3.7087 44 1 11.7813 -1.4261 -2.5717 45 1 10.2974 -2.2919 -2.1061 46 1 11.4346 1.4707 -2.4933 47 1 11.9650 3.8910 -4.7267 48 1 5.6563 3.9937 0.0008 49 1 2.7383 4.2909 -1.0268 50 1 2.0337 3.7469 0.5145 51 1 3.4428 4.8344 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135600934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:41 Heat of formation + Delta-G solvation = -77.995715 kcal Electronic energy + Delta-G solvation = -29214.510865 eV Core-core repulsion = 25305.933989 eV Total energy + Delta-G solvation = -3908.576877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60142 -40.63739 -38.63163 -37.97744 -36.07315 -34.36670 -33.83162 -32.56185 -32.11834 -30.74491 -30.34605 -27.78182 -27.57245 -25.69484 -25.31346 -24.28869 -22.47637 -22.16364 -21.34813 -21.16858 -19.29989 -19.17695 -18.40447 -17.56199 -17.10748 -16.83096 -16.52771 -16.01083 -15.72563 -15.66837 -15.43622 -15.14240 -14.80929 -14.73911 -14.46799 -14.27461 -14.15048 -13.68647 -13.63705 -13.60069 -13.35607 -13.29858 -13.17984 -12.94581 -12.84869 -12.80072 -12.68872 -12.62960 -12.58008 -12.23862 -12.18294 -11.83389 -11.73947 -11.63837 -11.54670 -11.41193 -10.95841 -10.89192 -10.03316 -9.93504 -9.18062 -8.94000 -7.91801 -5.16754 -0.11740 0.26457 1.41034 1.44719 1.50907 1.87388 2.15690 2.26853 2.56183 2.82208 3.42714 3.65146 3.74870 3.76568 3.87781 4.02987 4.09386 4.09959 4.14916 4.18053 4.25063 4.40281 4.42091 4.43977 4.55632 4.63741 4.70397 4.77556 4.80059 4.82037 4.84174 4.87454 4.95275 4.97461 5.04395 5.11552 5.14799 5.15165 5.22384 5.25226 5.29362 5.34840 5.40518 5.43826 5.51938 5.63283 5.65352 5.69663 6.31647 6.35636 6.64944 7.34751 7.37226 8.18110 8.37283 9.32103 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.003157 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.843080 B = 8866.387572 C = 9758.805134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.320 6.320 4 C 0.151 3.849 5 C -0.207 4.207 6 C -0.042 4.042 7 C -0.185 4.185 8 C 0.553 3.447 9 O -0.591 6.591 10 N -0.698 5.698 11 C 0.146 3.854 12 H 0.045 0.955 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.163 3.837 16 H 0.042 0.958 17 C -0.156 4.156 18 N -0.732 5.732 19 C -0.223 4.223 20 H 0.069 0.931 21 C -0.080 4.080 22 N -0.969 5.969 23 Si 0.960 3.040 24 H -0.297 1.297 25 H -0.294 1.294 26 H -0.266 1.266 27 C -0.042 4.042 28 C -0.139 4.139 29 C -0.101 4.101 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.410 0.590 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.029 0.971 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.370 0.630 47 H 0.247 0.753 48 H 0.122 0.878 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.531 -13.123 14.920 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.233 6.233 4 C 0.105 3.895 5 C -0.225 4.225 6 C -0.061 4.061 7 C -0.189 4.189 8 C 0.342 3.658 9 O -0.472 6.472 10 N -0.350 5.350 11 C 0.041 3.959 12 H 0.063 0.937 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.060 0.940 17 C -0.215 4.215 18 N -0.372 5.372 19 C -0.356 4.356 20 H 0.087 0.913 21 C -0.272 4.272 22 N -0.621 5.621 23 Si 0.790 3.210 24 H -0.225 1.225 25 H -0.221 1.221 26 H -0.191 1.191 27 C -0.061 4.061 28 C -0.139 4.139 29 C -0.158 4.158 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.175 0.825 37 H 0.248 0.752 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.201 0.799 47 H 0.056 0.944 48 H 0.140 0.860 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.481 -12.247 14.776 28.068 hybrid contribution 0.349 0.715 -1.170 1.415 sum -20.132 -11.532 13.607 26.896 Atomic orbital electron populations 1.21808 0.91525 1.04206 1.03148 1.23189 0.96917 0.80466 1.02838 1.86033 1.18009 1.31732 1.87525 1.19125 0.83206 0.93498 0.93708 1.21458 0.93276 0.99323 1.08490 1.21317 0.95605 0.95471 0.93668 1.19838 0.91772 0.95586 1.11661 1.18599 0.87333 0.84523 0.75341 1.90758 1.78422 1.25800 1.52268 1.45719 1.06407 1.08829 1.74035 1.20857 0.79129 0.99231 0.96661 0.93661 1.22082 1.01538 1.02017 0.95265 1.22088 1.01078 0.97449 0.94972 1.20538 0.96331 0.87033 0.90624 0.93972 1.22300 1.00631 0.98368 1.00224 1.42603 1.34457 1.34507 1.25606 1.19496 1.07837 1.08838 0.99415 0.91292 1.25438 0.99473 0.99608 1.02663 1.69799 1.26594 1.23864 1.41820 0.85320 0.77179 0.78183 0.80280 1.22549 1.22107 1.19121 1.20987 0.91964 0.98783 0.94339 1.19365 0.93395 0.94245 1.06928 1.20616 0.98234 0.94162 1.02771 0.88143 0.91735 0.92107 0.90821 0.90265 0.81510 0.82538 0.75199 0.94594 0.89757 0.91088 0.87263 0.90456 0.95221 0.93920 0.90297 0.79869 0.94424 0.85966 0.91133 0.90290 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.04 0.43 5.45 71.98 0.39 0.82 16 3 O -0.32 -5.87 9.16 -90.25 -0.83 -6.69 16 4 C 0.15 3.25 6.67 22.63 0.15 3.40 16 5 C -0.21 -3.74 9.01 22.33 0.20 -3.54 16 6 C -0.04 -0.89 9.53 22.50 0.21 -0.67 16 7 C -0.19 -5.54 5.87 -20.08 -0.12 -5.66 16 8 C 0.55 20.30 7.73 86.72 0.67 20.97 16 9 O -0.59 -28.01 16.00 -3.99 -0.06 -28.07 16 10 N -0.70 -20.89 4.40 -445.63 -1.96 -22.85 16 11 C 0.15 4.82 2.52 44.99 0.11 4.94 16 12 H 0.05 2.09 7.05 -2.38 -0.02 2.08 16 13 C -0.15 -4.12 9.48 71.98 0.68 -3.44 16 14 C -0.12 -3.34 4.29 30.60 0.13 -3.21 16 15 C 0.16 5.98 2.84 44.99 0.13 6.11 16 16 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 17 C -0.16 -5.03 9.49 71.98 0.68 -4.35 16 18 N -0.73 -36.95 4.49 -322.93 -1.45 -38.40 16 19 C -0.22 -12.80 9.93 84.04 0.83 -11.96 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 21 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 22 N -0.97 -62.38 13.06 21.65 0.28 -62.09 16 23 Si 0.96 49.04 29.55 68.60 2.03 51.06 16 24 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 25 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 26 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 27 C -0.04 -1.26 9.23 22.51 0.21 -1.05 16 28 C -0.14 -3.48 5.89 -19.81 -0.12 -3.59 16 29 C -0.10 -2.10 9.78 71.24 0.70 -1.41 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 34 H 0.08 0.61 7.65 -2.39 -0.02 0.59 16 35 H 0.17 1.78 6.28 -2.91 -0.02 1.77 16 36 H 0.16 2.27 6.40 -2.91 -0.02 2.25 16 37 H 0.41 8.81 6.63 -92.71 -0.61 8.19 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.37 20.43 7.80 -92.71 -0.72 19.70 16 47 H 0.25 15.55 8.31 -92.70 -0.77 14.77 16 48 H 0.12 4.05 7.64 -2.91 -0.02 4.03 16 49 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.08 1.46 7.52 -2.39 -0.02 1.44 16 51 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 Total: -1.00 -80.90 415.59 3.68 -77.22 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.41 Total: 37.25 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 6.08 Total: -7.43 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -3.13 Total: -123.34 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.89 Total: -34.76 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.06 kcal Total: -80.90 3.68 -77.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135600934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.773 kcal (2) G-P(sol) polarization free energy of solvation -80.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds