Wall clock time and date at job start Tue Mar 31 2020 19:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35705 * 117.00340 * 179.97438 * 3 2 1 5 5 C 1.39021 * 119.91126 * 0.02562 * 4 3 2 6 6 C 1.37679 * 120.09023 * 179.97438 * 5 4 3 7 7 C 1.39754 * 119.90887 * 0.02562 * 6 5 4 8 8 C 1.47601 * 120.08426 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99727 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00304 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00021 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47115 * 34.99525 * 11 10 8 13 13 C 1.53001 * 109.46498 * 274.99565 * 11 10 8 14 14 C 1.52999 * 109.47113 * 154.99588 * 11 10 8 15 15 C 1.52993 * 109.47273 * 294.99868 * 14 11 10 16 16 H 1.08993 * 109.47189 * 304.99789 * 15 14 11 17 17 C 1.53004 * 109.47203 * 185.00064 * 15 14 11 18 18 N 1.46503 * 109.47426 * 64.99983 * 15 14 11 19 19 C 1.36937 * 120.00061 * 205.00034 * 18 15 14 20 20 H 1.07994 * 120.00219 * 359.97438 * 19 18 15 21 21 C 1.38816 * 119.99669 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00301 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99710 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47422 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47068 * 119.99743 * 23 21 19 26 26 H 1.48499 * 109.47006 * 239.99879 * 23 21 19 27 27 C 1.39714 * 119.82598 * 359.97438 * 7 6 5 28 28 C 1.37720 * 119.90873 * 359.70911 * 27 7 6 29 29 C 1.50700 * 119.95404 * 180.31124 * 28 27 7 30 30 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 33 33 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 34 34 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 35 35 H 1.08001 * 119.94932 * 359.97438 * 5 4 3 36 36 H 1.08002 * 120.04627 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00043 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.47174 * 60.00602 * 13 11 10 39 39 H 1.09000 * 109.46581 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47405 * 299.99782 * 13 11 10 41 41 H 1.09004 * 109.46958 * 55.00062 * 14 11 10 42 42 H 1.08999 * 109.46878 * 174.99196 * 14 11 10 43 43 H 1.08999 * 109.46797 * 180.02562 * 17 15 14 44 44 H 1.09001 * 109.46965 * 299.99733 * 17 15 14 45 45 H 1.08995 * 109.47032 * 59.99558 * 17 15 14 46 46 H 0.97006 * 119.99657 * 24.99893 * 18 15 14 47 47 H 0.96998 * 120.00182 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.04453 * 179.97438 * 27 7 6 49 49 H 1.09006 * 109.47096 * 270.25295 * 29 28 27 50 50 H 1.08995 * 109.47296 * 30.25406 * 29 28 27 51 51 H 1.09005 * 109.46863 * 150.25614 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3517 1.5252 0.0005 5 6 4.1969 0.4214 0.0005 6 6 5.5624 0.5976 0.0005 7 6 6.0985 1.8882 0.0011 8 6 7.5618 2.0815 0.0006 9 8 8.0265 3.2051 0.0015 10 7 8.3828 1.0127 0.0000 11 6 9.8352 1.2047 0.0000 12 1 10.0851 2.0866 0.5898 13 6 10.3241 1.3967 -1.4370 14 6 10.5121 -0.0248 0.6091 15 6 10.1198 -0.1453 2.0830 16 1 10.3598 0.7838 2.6000 17 6 10.8928 -1.2998 2.7238 18 7 8.6815 -0.4039 2.1860 19 6 8.0026 -0.0543 3.3227 20 1 8.5275 0.4117 4.1434 21 6 6.6396 -0.2989 3.4200 22 7 5.9998 -0.8665 2.4196 23 14 5.7134 0.1786 4.9703 24 1 6.6545 0.7962 5.9388 25 1 4.6449 1.1517 4.6285 26 1 5.1046 -1.0327 5.5761 27 6 5.2457 2.9949 0.0011 28 6 3.8809 2.8102 -0.0055 29 6 2.9602 4.0031 -0.0126 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.7817 -0.5756 0.0005 36 1 6.2183 -0.2605 0.0001 37 1 8.0120 0.1163 0.0004 38 1 9.8419 2.2727 -1.8708 39 1 11.4046 1.5400 -1.4369 40 1 10.0742 0.5148 -2.0267 41 1 10.1919 -0.9185 0.0736 42 1 11.5942 0.0789 0.5284 43 1 10.6129 -1.3859 3.7737 44 1 10.6528 -2.2289 2.2068 45 1 11.9629 -1.1074 2.6472 46 1 8.2101 -0.8229 1.4489 47 1 5.0473 -1.0371 2.4874 48 1 5.6562 3.9938 0.0020 49 1 2.7365 4.2956 1.0134 50 1 3.4435 4.8321 -0.5295 51 1 2.0344 3.7445 -0.5267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135600936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:48 Heat of formation + Delta-G solvation = -48.206556 kcal Electronic energy + Delta-G solvation = -30685.984034 eV Core-core repulsion = 26778.698912 eV Total energy + Delta-G solvation = -3907.285122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.03198 -39.09504 -37.16509 -36.38106 -34.11751 -32.90302 -32.03375 -31.44713 -30.64372 -29.21909 -28.49806 -26.36210 -26.24014 -24.04401 -23.65784 -22.86274 -20.98628 -20.66531 -20.19174 -19.34817 -17.75130 -17.15473 -16.73422 -16.07805 -15.95153 -15.30520 -14.77493 -14.33527 -14.14132 -13.92235 -13.76142 -13.56892 -13.45920 -13.34468 -12.88018 -12.74632 -12.59261 -12.55068 -12.54294 -12.13506 -12.07535 -11.88545 -11.71316 -11.65409 -11.60400 -11.34340 -11.27579 -10.98891 -10.83856 -10.73943 -10.43621 -10.36653 -10.23571 -10.22171 -9.88960 -9.68202 -9.15012 -8.96149 -8.33585 -8.23008 -7.61139 -6.91899 -5.82370 -3.04490 1.57988 1.97089 3.41508 3.42103 3.49599 3.51376 3.57240 3.92981 4.54935 4.59401 4.96789 5.00986 5.11265 5.21980 5.30424 5.32733 5.43420 5.48396 5.52142 5.57548 5.58278 5.70925 5.74861 5.78804 5.82207 5.89690 5.95913 5.98932 6.00539 6.02312 6.04047 6.07685 6.16017 6.25305 6.31205 6.38982 6.42141 6.56012 6.61479 6.61809 6.80240 6.86170 6.97643 7.03535 7.06102 7.20333 7.28844 7.70914 7.75955 8.30439 8.38471 9.02980 9.50249 10.02731 10.38793 11.40020 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.004733 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.513235 B = 5914.280840 C = 7367.051667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.316 6.316 4 C 0.145 3.855 5 C -0.206 4.206 6 C 0.020 3.980 7 C -0.171 4.171 8 C 0.576 3.424 9 O -0.568 6.568 10 N -0.695 5.695 11 C 0.150 3.850 12 H 0.083 0.917 13 C -0.162 4.162 14 C -0.134 4.134 15 C 0.169 3.831 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.715 5.715 19 C -0.223 4.223 20 H 0.067 0.933 21 C -0.007 4.007 22 N -0.925 5.925 23 Si 0.897 3.103 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.295 1.295 27 C -0.028 4.028 28 C -0.149 4.149 29 C -0.096 4.096 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.402 0.598 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.035 0.965 46 H 0.376 0.624 47 H 0.252 0.748 48 H 0.131 0.869 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 0.236 -9.065 9.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.230 6.230 4 C 0.099 3.901 5 C -0.225 4.225 6 C 0.001 3.999 7 C -0.175 4.175 8 C 0.365 3.635 9 O -0.450 6.450 10 N -0.348 5.348 11 C 0.045 3.955 12 H 0.101 0.899 13 C -0.220 4.220 14 C -0.172 4.172 15 C 0.059 3.941 16 H 0.066 0.934 17 C -0.223 4.223 18 N -0.358 5.358 19 C -0.354 4.354 20 H 0.085 0.915 21 C -0.202 4.202 22 N -0.574 5.574 23 Si 0.729 3.271 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.222 1.222 27 C -0.047 4.047 28 C -0.150 4.150 29 C -0.152 4.152 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.241 0.759 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.211 0.789 47 H 0.062 0.938 48 H 0.149 0.851 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.661 1.201 -8.876 9.344 hybrid contribution -0.815 -0.802 1.052 1.554 sum -3.476 0.399 -7.825 8.571 Atomic orbital electron populations 1.21756 0.93210 1.02561 1.03156 1.22757 0.95327 0.82363 1.01792 1.85946 1.19621 1.28967 1.88493 1.19002 0.81819 0.93805 0.95464 1.20998 0.94333 0.97348 1.09831 1.21064 0.94494 0.96007 0.88363 1.19732 0.93011 0.94100 1.10637 1.18004 0.86260 0.84324 0.74926 1.90665 1.77808 1.24039 1.52445 1.45867 1.05638 1.09382 1.73882 1.20784 0.80341 0.98975 0.95392 0.89935 1.22207 1.00744 1.01835 0.97255 1.22211 0.99923 0.97259 0.97841 1.20286 0.85976 0.95834 0.91995 0.93412 1.22415 0.97941 1.00232 1.01717 1.42444 1.02186 1.72842 1.18334 1.19218 0.90806 1.31521 0.93850 0.91549 1.24474 0.96298 1.01864 0.97602 1.69511 1.08576 1.48790 1.30486 0.86257 0.80113 0.77498 0.83243 1.20913 1.21942 1.22238 1.20807 0.90958 0.98739 0.94154 1.18952 0.93832 0.92319 1.09889 1.20495 0.98172 0.94795 1.01777 0.91814 0.90607 0.91706 0.92113 0.91668 0.85607 0.84455 0.75947 0.92363 0.92222 0.92879 0.91831 0.90840 0.92901 0.93650 0.94594 0.78905 0.93779 0.85092 0.92037 0.92102 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.05 0.67 5.45 37.16 0.20 0.87 16 3 O -0.32 -5.00 9.16 -18.82 -0.17 -5.17 16 4 C 0.14 2.56 6.67 -39.02 -0.26 2.30 16 5 C -0.21 -3.71 9.01 -39.50 -0.36 -4.07 16 6 C 0.02 0.39 7.83 -39.22 -0.31 0.08 16 7 C -0.17 -3.46 5.87 -104.96 -0.62 -4.07 16 8 C 0.58 12.03 7.73 -12.44 -0.10 11.94 16 9 O -0.57 -13.10 16.00 5.28 0.08 -13.02 16 10 N -0.70 -12.78 3.75 -54.82 -0.21 -12.99 16 11 C 0.15 2.46 2.58 -67.93 -0.17 2.28 16 12 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 13 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 14 C -0.13 -2.00 4.43 -26.74 -0.12 -2.12 16 15 C 0.17 3.11 2.89 -67.93 -0.20 2.91 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 18 N -0.72 -15.77 3.84 -53.43 -0.21 -15.97 16 19 C -0.22 -5.72 9.93 -15.06 -0.15 -5.87 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -23.44 10.71 55.49 0.59 -22.85 16 23 Si 0.90 22.11 29.55 -169.99 -5.02 17.08 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C -0.03 -0.53 9.23 -39.22 -0.36 -0.89 16 28 C -0.15 -2.64 5.89 -104.54 -0.62 -3.25 16 29 C -0.10 -1.39 9.78 36.01 0.35 -1.03 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 34 H 0.07 0.87 7.65 -51.93 -0.40 0.47 16 35 H 0.13 2.06 6.28 -52.49 -0.33 1.73 16 36 H 0.14 2.67 5.83 -52.49 -0.31 2.37 16 37 H 0.40 7.34 4.53 -40.82 -0.18 7.15 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.38 8.37 5.70 -40.82 -0.23 8.14 16 47 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 48 H 0.13 2.42 7.64 -52.49 -0.40 2.02 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 51 H 0.06 0.88 7.52 -51.93 -0.39 0.49 16 LS Contribution 406.78 15.07 6.13 6.13 Total: -1.00 -28.85 406.78 -9.00 -37.85 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -8.49 Total: 15.49 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.71 Total: -6.54 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.18 Total: -51.81 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.09 Total: -18.19 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.85 -9.00 -37.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135600936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.361 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds