Wall clock time and date at job start Tue Mar 31 2020 19:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35705 * 117.00340 * 179.97438 * 3 2 1 5 5 C 1.39021 * 119.91126 * 0.02562 * 4 3 2 6 6 C 1.37679 * 120.09023 * 179.97438 * 5 4 3 7 7 C 1.39754 * 119.90887 * 0.02562 * 6 5 4 8 8 C 1.47601 * 120.08426 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99727 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00304 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00021 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47115 * 34.99525 * 11 10 8 13 13 C 1.53001 * 109.46498 * 274.99565 * 11 10 8 14 14 C 1.52999 * 109.47113 * 154.99588 * 11 10 8 15 15 C 1.52993 * 109.47273 * 294.99868 * 14 11 10 16 16 H 1.08993 * 109.47189 * 304.99789 * 15 14 11 17 17 C 1.53004 * 109.47203 * 185.00064 * 15 14 11 18 18 N 1.46503 * 109.47426 * 64.99983 * 15 14 11 19 19 C 1.36937 * 120.00061 * 205.00034 * 18 15 14 20 20 H 1.07994 * 120.00219 * 359.97438 * 19 18 15 21 21 C 1.38816 * 119.99669 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00301 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99710 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47422 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47068 * 119.99743 * 23 21 19 26 26 H 1.48499 * 109.47006 * 239.99879 * 23 21 19 27 27 C 1.39714 * 119.82598 * 359.97438 * 7 6 5 28 28 C 1.37720 * 119.90873 * 359.70911 * 27 7 6 29 29 C 1.50700 * 119.95404 * 180.31124 * 28 27 7 30 30 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 33 33 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 34 34 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 35 35 H 1.08001 * 119.94932 * 359.97438 * 5 4 3 36 36 H 1.08002 * 120.04627 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00043 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.47174 * 60.00602 * 13 11 10 39 39 H 1.09000 * 109.46581 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47405 * 299.99782 * 13 11 10 41 41 H 1.09004 * 109.46958 * 55.00062 * 14 11 10 42 42 H 1.08999 * 109.46878 * 174.99196 * 14 11 10 43 43 H 1.08999 * 109.46797 * 180.02562 * 17 15 14 44 44 H 1.09001 * 109.46965 * 299.99733 * 17 15 14 45 45 H 1.08995 * 109.47032 * 59.99558 * 17 15 14 46 46 H 0.97006 * 119.99657 * 24.99893 * 18 15 14 47 47 H 0.96998 * 120.00182 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.04453 * 179.97438 * 27 7 6 49 49 H 1.09006 * 109.47096 * 270.25295 * 29 28 27 50 50 H 1.08995 * 109.47296 * 30.25406 * 29 28 27 51 51 H 1.09005 * 109.46863 * 150.25614 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3517 1.5252 0.0005 5 6 4.1969 0.4214 0.0005 6 6 5.5624 0.5976 0.0005 7 6 6.0985 1.8882 0.0011 8 6 7.5618 2.0815 0.0006 9 8 8.0265 3.2051 0.0015 10 7 8.3828 1.0127 0.0000 11 6 9.8352 1.2047 0.0000 12 1 10.0851 2.0866 0.5898 13 6 10.3241 1.3967 -1.4370 14 6 10.5121 -0.0248 0.6091 15 6 10.1198 -0.1453 2.0830 16 1 10.3598 0.7838 2.6000 17 6 10.8928 -1.2998 2.7238 18 7 8.6815 -0.4039 2.1860 19 6 8.0026 -0.0543 3.3227 20 1 8.5275 0.4117 4.1434 21 6 6.6396 -0.2989 3.4200 22 7 5.9998 -0.8665 2.4196 23 14 5.7134 0.1786 4.9703 24 1 6.6545 0.7962 5.9388 25 1 4.6449 1.1517 4.6285 26 1 5.1046 -1.0327 5.5761 27 6 5.2457 2.9949 0.0011 28 6 3.8809 2.8102 -0.0055 29 6 2.9602 4.0031 -0.0126 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.7817 -0.5756 0.0005 36 1 6.2183 -0.2605 0.0001 37 1 8.0120 0.1163 0.0004 38 1 9.8419 2.2727 -1.8708 39 1 11.4046 1.5400 -1.4369 40 1 10.0742 0.5148 -2.0267 41 1 10.1919 -0.9185 0.0736 42 1 11.5942 0.0789 0.5284 43 1 10.6129 -1.3859 3.7737 44 1 10.6528 -2.2289 2.2068 45 1 11.9629 -1.1074 2.6472 46 1 8.2101 -0.8229 1.4489 47 1 5.0473 -1.0371 2.4874 48 1 5.6562 3.9938 0.0020 49 1 2.7365 4.2956 1.0134 50 1 3.4435 4.8321 -0.5295 51 1 2.0344 3.7445 -0.5267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135600936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:47 Heat of formation + Delta-G solvation = -62.931349 kcal Electronic energy + Delta-G solvation = -30686.622549 eV Core-core repulsion = 26778.698912 eV Total energy + Delta-G solvation = -3907.923637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43320 -40.52797 -38.55610 -37.88088 -35.74121 -34.37994 -33.61990 -32.50834 -32.10761 -30.64841 -30.10122 -27.62994 -27.54216 -25.53102 -25.23746 -24.17715 -22.30899 -22.01725 -21.65708 -20.85385 -19.17665 -18.93083 -18.20709 -17.50242 -17.06817 -16.78736 -16.45346 -15.89532 -15.65573 -15.49639 -15.35615 -15.03621 -14.68439 -14.64913 -14.29740 -14.17902 -13.98379 -13.61594 -13.57670 -13.51678 -13.31861 -13.25859 -13.17053 -12.91725 -12.79631 -12.76747 -12.59480 -12.52779 -12.49137 -12.25954 -12.12805 -11.72499 -11.62815 -11.58855 -11.54573 -11.39072 -10.86046 -10.75702 -9.85706 -9.68403 -9.03148 -8.72833 -7.81853 -5.00579 0.09783 0.52782 1.40762 1.47655 1.49287 2.03177 2.24033 2.48659 2.60903 3.04970 3.53047 3.77962 3.88608 3.90768 3.99514 4.06365 4.12082 4.18089 4.20280 4.35089 4.38642 4.40264 4.43863 4.58863 4.61332 4.70815 4.75065 4.82177 4.85182 4.86873 4.88979 4.93941 4.95310 4.97697 5.09472 5.15651 5.16514 5.21080 5.28934 5.38394 5.42356 5.44268 5.51884 5.57147 5.64013 5.66054 5.79834 5.86238 6.41579 6.44810 6.77591 7.45872 7.51153 8.20516 8.49197 9.38231 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.004733 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.513235 B = 5914.280840 C = 7367.051667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 O -0.319 6.319 4 C 0.144 3.856 5 C -0.210 4.210 6 C 0.017 3.983 7 C -0.194 4.194 8 C 0.567 3.433 9 O -0.600 6.600 10 N -0.687 5.687 11 C 0.145 3.855 12 H 0.055 0.945 13 C -0.151 4.151 14 C -0.120 4.120 15 C 0.161 3.839 16 H 0.026 0.974 17 C -0.153 4.153 18 N -0.718 5.718 19 C -0.227 4.227 20 H 0.050 0.950 21 C -0.040 4.040 22 N -0.921 5.921 23 Si 0.930 3.070 24 H -0.287 1.287 25 H -0.307 1.307 26 H -0.295 1.295 27 C -0.041 4.041 28 C -0.154 4.154 29 C -0.092 4.092 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.403 0.597 38 H 0.037 0.963 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.028 0.972 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.375 0.625 47 H 0.248 0.752 48 H 0.130 0.870 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -0.821 -10.242 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.233 6.233 4 C 0.098 3.902 5 C -0.229 4.229 6 C -0.003 4.003 7 C -0.197 4.197 8 C 0.356 3.644 9 O -0.485 6.485 10 N -0.338 5.338 11 C 0.040 3.960 12 H 0.073 0.927 13 C -0.210 4.210 14 C -0.158 4.158 15 C 0.053 3.947 16 H 0.044 0.956 17 C -0.212 4.212 18 N -0.361 5.361 19 C -0.360 4.360 20 H 0.068 0.932 21 C -0.235 4.235 22 N -0.570 5.570 23 Si 0.764 3.236 24 H -0.213 1.213 25 H -0.236 1.236 26 H -0.222 1.222 27 C -0.060 4.060 28 C -0.155 4.155 29 C -0.149 4.149 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.242 0.758 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.210 0.790 47 H 0.058 0.942 48 H 0.148 0.852 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.610 0.112 -10.061 10.395 hybrid contribution -0.852 -0.479 1.426 1.728 sum -3.462 -0.366 -8.636 9.311 Atomic orbital electron populations 1.21777 0.90775 1.04183 1.03325 1.23080 0.97254 0.80899 1.01986 1.85958 1.18286 1.31063 1.87994 1.19126 0.82793 0.93715 0.94580 1.21173 0.93938 0.98314 1.09492 1.21002 0.95025 0.95375 0.88876 1.19868 0.92907 0.94934 1.12034 1.18258 0.86936 0.84390 0.74777 1.90628 1.78381 1.25146 1.54300 1.45907 1.06505 1.08763 1.72650 1.20963 0.79275 0.98666 0.97058 0.92719 1.22105 1.02164 1.01661 0.95023 1.22131 1.01834 0.96905 0.94908 1.20484 0.84199 0.95469 0.94543 0.95572 1.22259 0.99626 0.99463 0.99887 1.42460 1.03711 1.72735 1.17169 1.19212 0.91065 1.31119 0.94586 0.93181 1.24807 0.96911 1.02936 0.98841 1.69556 1.08157 1.48977 1.30347 0.85730 0.78937 0.76729 0.82207 1.21276 1.23583 1.22213 1.20920 0.91720 0.98499 0.94819 1.19308 0.93770 0.93690 1.08742 1.20536 0.98041 0.94026 1.02280 0.91029 0.88257 0.92132 0.90787 0.92594 0.84211 0.84995 0.75825 0.94360 0.89479 0.91247 0.90414 0.87280 0.95318 0.93203 0.91333 0.79038 0.94193 0.85249 0.91831 0.90501 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.04 1.00 5.45 71.98 0.39 1.40 16 3 O -0.32 -9.68 9.16 -90.25 -0.83 -10.51 16 4 C 0.14 5.02 6.67 22.63 0.15 5.17 16 5 C -0.21 -7.52 9.01 22.33 0.20 -7.32 16 6 C 0.02 0.65 7.83 22.50 0.18 0.82 16 7 C -0.19 -8.04 5.87 -20.08 -0.12 -8.15 16 8 C 0.57 24.39 7.73 86.71 0.67 25.06 16 9 O -0.60 -28.73 16.00 -4.01 -0.06 -28.79 16 10 N -0.69 -25.44 3.75 -445.62 -1.67 -27.11 16 11 C 0.14 4.61 2.58 44.99 0.12 4.73 16 12 H 0.05 2.06 7.58 -2.39 -0.02 2.05 16 13 C -0.15 -3.86 9.48 71.98 0.68 -3.18 16 14 C -0.12 -3.28 4.43 30.59 0.14 -3.14 16 15 C 0.16 5.79 2.89 44.99 0.13 5.92 16 16 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 17 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 18 N -0.72 -31.62 3.84 -322.95 -1.24 -32.86 16 19 C -0.23 -11.83 9.93 84.03 0.83 -11.00 16 20 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 21 C -0.04 -2.10 5.50 84.86 0.47 -1.64 16 22 N -0.92 -46.78 10.71 21.65 0.23 -46.54 16 23 Si 0.93 45.87 29.55 68.60 2.03 47.90 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 C -0.04 -1.58 9.23 22.50 0.21 -1.37 16 28 C -0.15 -5.42 5.89 -19.81 -0.12 -5.54 16 29 C -0.09 -2.57 9.78 71.24 0.70 -1.87 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.55 7.65 -2.39 -0.02 1.54 16 34 H 0.06 1.43 7.65 -2.38 -0.02 1.41 16 35 H 0.14 4.48 6.28 -2.91 -0.02 4.46 16 36 H 0.13 5.20 5.83 -2.91 -0.02 5.18 16 37 H 0.40 14.71 4.53 -92.71 -0.42 14.29 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.37 16.58 5.70 -92.70 -0.53 16.05 16 47 H 0.25 12.63 8.31 -92.71 -0.77 11.86 16 48 H 0.13 4.96 7.64 -2.91 -0.02 4.94 16 49 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 50 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 51 H 0.07 1.92 7.52 -2.38 -0.02 1.91 16 Total: -1.00 -63.43 406.78 4.48 -58.95 By element: Atomic # 1 Polarization: 45.01 SS G_CDS: -0.02 Total: 44.99 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.05 Total: -6.02 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -2.68 Total: -106.52 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.89 Total: -39.30 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -63.43 4.48 -58.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135600936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.986 kcal (2) G-P(sol) polarization free energy of solvation -63.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds