Wall clock time and date at job start Tue Mar 31 2020 19:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46976 * 325.00337 * 12 11 9 14 14 C 1.53002 * 109.47205 * 85.00140 * 12 11 9 15 15 C 1.52997 * 109.47291 * 205.00389 * 12 11 9 16 16 C 1.52998 * 109.47453 * 65.00089 * 15 12 11 17 17 H 1.09002 * 109.46836 * 305.00262 * 16 15 12 18 18 C 1.52997 * 109.47408 * 185.00471 * 16 15 12 19 19 N 1.46497 * 109.47243 * 64.99728 * 16 15 12 20 20 C 1.36934 * 120.00159 * 205.00385 * 19 16 15 21 21 H 1.07995 * 120.00212 * 0.02562 * 20 19 16 22 22 C 1.38817 * 120.00277 * 180.02562 * 20 19 16 23 23 N 1.31619 * 119.99392 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00355 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46983 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47417 * 119.99897 * 24 22 20 27 27 H 1.48502 * 109.47399 * 240.00069 * 24 22 20 28 28 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 29 29 C 1.38145 * 120.05942 * 359.97438 * 28 7 6 30 30 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 32 32 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 33 33 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 35 35 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 37 37 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 38 38 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 39 39 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.46764 * 299.99916 * 14 12 11 41 41 H 1.08998 * 109.46877 * 59.99890 * 14 12 11 42 42 H 1.08998 * 109.46856 * 179.97438 * 14 12 11 43 43 H 1.09002 * 109.47359 * 184.99877 * 15 12 11 44 44 H 1.09005 * 109.47422 * 304.99979 * 15 12 11 45 45 H 1.08996 * 109.47464 * 59.99823 * 18 16 15 46 46 H 1.09001 * 109.47038 * 180.02562 * 18 16 15 47 47 H 1.08998 * 109.46674 * 299.99313 * 18 16 15 48 48 H 0.97004 * 119.99892 * 25.00961 * 19 16 15 49 49 H 0.97009 * 119.99746 * 179.97438 * 23 22 20 50 50 H 1.08009 * 119.97583 * 179.97438 * 28 7 6 51 51 H 1.08000 * 120.03441 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.1406 2.8850 3.6743 14 6 10.1235 0.9707 3.5740 15 6 11.1955 3.1765 3.0970 16 6 10.9322 4.6285 2.6930 17 1 10.4448 4.6518 1.7183 18 6 12.2595 5.3857 2.6176 19 7 10.0640 5.2626 3.6882 20 6 9.2838 6.3309 3.3349 21 1 9.3080 6.7059 2.3224 22 6 8.4615 6.9321 4.2780 23 7 8.4316 6.4748 5.5118 24 14 7.3977 8.3899 3.7962 25 1 7.6134 8.7074 2.3616 26 1 5.9684 8.0552 4.0200 27 1 7.7660 9.5666 4.6239 28 6 5.2549 2.9853 0.0010 29 6 3.8850 2.8070 0.0003 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.7884 -0.5724 0.0117 36 1 6.2281 -0.2456 0.0032 37 1 8.0671 1.2509 -0.5113 38 1 7.8338 3.0155 -0.5117 39 1 10.0263 2.4075 0.9329 40 1 9.1897 0.4095 3.5415 41 1 10.8676 0.4744 2.9511 42 1 10.4838 1.0182 4.6017 43 1 11.6011 3.1487 4.1083 44 1 11.9113 2.7313 2.4060 45 1 12.9054 4.9140 1.8771 46 1 12.0718 6.4203 2.3303 47 1 12.7468 5.3625 3.5923 48 1 10.0420 4.9256 4.5976 49 1 7.8573 6.8950 6.1711 50 1 5.6690 3.9828 0.0011 51 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136092755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:54 Heat of formation + Delta-G solvation = -56.164823 kcal Electronic energy + Delta-G solvation = -28919.063452 eV Core-core repulsion = 25011.433234 eV Total energy + Delta-G solvation = -3907.630218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.28695 -39.43507 -37.71137 -36.63238 -34.35915 -32.74837 -32.10974 -31.49231 -30.87893 -30.33215 -28.55688 -26.83315 -26.24916 -24.17795 -23.57766 -22.36517 -21.74315 -20.79818 -20.03915 -19.65169 -18.33277 -17.26375 -16.67001 -16.24820 -16.16876 -15.95369 -15.19197 -14.88883 -14.62442 -14.19965 -13.93277 -13.73899 -13.66261 -13.52650 -13.44348 -13.24162 -12.99467 -12.80217 -12.68957 -12.18576 -12.06659 -11.94031 -11.87357 -11.73031 -11.68837 -11.58754 -11.41639 -10.98172 -10.84728 -10.79811 -10.75270 -10.56869 -10.36945 -10.16345 -9.83934 -9.57974 -9.42064 -8.92530 -8.83753 -8.60240 -8.05052 -6.87163 -5.68561 -2.96266 1.41715 1.44297 3.07823 3.08974 3.48529 3.49913 3.53099 3.56369 3.92982 4.64830 4.66060 4.66318 4.78224 4.85382 4.87581 4.98778 5.11386 5.19023 5.25630 5.30876 5.38552 5.47402 5.50752 5.53814 5.55284 5.61725 5.66836 5.73765 5.74447 5.78969 5.93985 5.99113 6.05381 6.07355 6.17709 6.29200 6.33053 6.36081 6.40388 6.48529 6.61165 6.67470 6.77729 6.81391 6.87712 7.00323 7.11097 7.38750 7.76581 7.91348 8.49751 8.68757 9.61103 10.18932 10.52904 11.54312 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.003080 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.371607 B = 9089.913696 C =10924.105898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.125 3.875 5 C -0.209 4.209 6 C -0.067 4.067 7 C -0.097 4.097 8 C -0.099 4.099 9 C 0.513 3.487 10 O -0.524 6.524 11 N -0.720 5.720 12 C 0.144 3.856 13 H 0.104 0.896 14 C -0.160 4.160 15 C -0.130 4.130 16 C 0.172 3.828 17 H 0.046 0.954 18 C -0.165 4.165 19 N -0.720 5.720 20 C -0.233 4.233 21 H 0.067 0.933 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.901 3.099 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 C -0.061 4.061 29 C -0.149 4.149 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.393 0.607 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.382 0.618 49 H 0.253 0.747 50 H 0.130 0.870 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -16.317 -14.685 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.080 3.920 5 C -0.228 4.228 6 C -0.085 4.085 7 C -0.098 4.098 8 C -0.139 4.139 9 C 0.298 3.702 10 O -0.399 6.399 11 N -0.371 5.371 12 C 0.040 3.960 13 H 0.122 0.878 14 C -0.218 4.218 15 C -0.169 4.169 16 C 0.062 3.938 17 H 0.064 0.936 18 C -0.226 4.226 19 N -0.362 5.362 20 C -0.364 4.364 21 H 0.085 0.915 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.733 3.267 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.220 1.220 28 C -0.079 4.079 29 C -0.167 4.167 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.226 0.774 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.216 0.784 49 H 0.063 0.937 50 H 0.148 0.852 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.921 -16.118 -14.078 21.960 hybrid contribution -0.121 0.604 -0.138 0.631 sum -5.042 -15.515 -14.216 21.639 Atomic orbital electron populations 1.21774 0.92878 1.02713 1.03547 1.22747 0.95753 0.82264 1.01307 1.86059 1.19335 1.29014 1.88851 1.18961 0.81979 0.94233 0.96834 1.21099 0.94238 0.97725 1.09722 1.20700 0.94206 0.96452 0.97151 1.19179 0.93936 0.93277 1.03379 1.20619 0.93194 1.04639 0.95404 1.20404 0.82314 0.76567 0.90936 1.90749 1.54891 1.48207 1.46095 1.45979 1.07798 1.74499 1.08826 1.20992 0.97331 0.94843 0.82845 0.87767 1.22176 1.01340 0.97348 1.00983 1.22161 0.95633 0.96823 1.02287 1.20216 0.90512 0.89254 0.93844 0.93635 1.22460 0.98887 1.01278 0.99933 1.42399 1.48165 1.36306 1.09304 1.19179 1.16219 1.05828 0.95179 0.91507 1.24696 1.00522 0.99832 0.95788 1.69659 1.42738 1.43167 1.02359 0.86199 0.80545 0.82592 0.77357 1.20684 1.21891 1.22024 1.20880 0.92125 0.98920 0.95954 1.20388 0.95186 0.94769 1.06387 0.90492 0.91459 0.91584 0.92203 0.92065 0.85830 0.86158 0.88553 0.88072 0.77401 0.92632 0.93259 0.91887 0.90777 0.92147 0.94753 0.92944 0.93578 0.78374 0.93677 0.85161 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.49 5.46 37.16 0.20 0.69 16 3 O -0.32 -4.08 10.14 -19.41 -0.20 -4.28 16 4 C 0.12 1.72 6.69 -39.21 -0.26 1.46 16 5 C -0.21 -2.61 9.04 -39.43 -0.36 -2.96 16 6 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 7 C -0.10 -1.33 4.37 -104.60 -0.46 -1.79 16 8 C -0.10 -1.17 5.83 -29.03 -0.17 -1.34 16 9 C 0.51 8.24 7.79 -10.98 -0.09 8.16 16 10 O -0.52 -11.14 15.70 5.56 0.09 -11.06 16 11 N -0.72 -10.23 4.45 -53.80 -0.24 -10.47 16 12 C 0.14 2.34 2.52 -67.93 -0.17 2.17 16 13 H 0.10 2.26 7.06 -51.93 -0.37 1.89 16 14 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 15 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 16 C 0.17 3.23 2.84 -67.93 -0.19 3.04 16 17 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16 18 C -0.17 -2.88 9.49 37.16 0.35 -2.52 16 19 N -0.72 -17.70 4.49 -53.43 -0.24 -17.94 16 20 C -0.23 -6.47 9.93 -15.06 -0.15 -6.62 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 24 Si 0.90 23.06 29.55 -169.99 -5.02 18.03 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 C -0.06 -0.88 9.69 -39.61 -0.38 -1.27 16 29 C -0.15 -2.13 9.99 -39.43 -0.39 -2.53 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 34 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 35 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 39 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 49 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 50 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 51 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 420.27 15.07 6.33 6.33 Total: -1.00 -35.15 420.27 -9.34 -44.49 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -8.86 Total: 12.76 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.93 Total: -9.85 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.25 Total: -56.43 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.11 Total: -15.34 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.15 -9.34 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136092755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.671 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds