Wall clock time and date at job start Tue Mar 31 2020 19:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46976 * 325.00337 * 12 11 9 14 14 C 1.53002 * 109.47205 * 85.00140 * 12 11 9 15 15 C 1.52997 * 109.47291 * 205.00389 * 12 11 9 16 16 C 1.52998 * 109.47453 * 65.00089 * 15 12 11 17 17 H 1.09002 * 109.46836 * 305.00262 * 16 15 12 18 18 C 1.52997 * 109.47408 * 185.00471 * 16 15 12 19 19 N 1.46497 * 109.47243 * 64.99728 * 16 15 12 20 20 C 1.36934 * 120.00159 * 205.00385 * 19 16 15 21 21 H 1.07995 * 120.00212 * 0.02562 * 20 19 16 22 22 C 1.38817 * 120.00277 * 180.02562 * 20 19 16 23 23 N 1.31619 * 119.99392 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00355 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46983 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47417 * 119.99897 * 24 22 20 27 27 H 1.48502 * 109.47399 * 240.00069 * 24 22 20 28 28 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 29 29 C 1.38145 * 120.05942 * 359.97438 * 28 7 6 30 30 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 32 32 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 33 33 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 35 35 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 37 37 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 38 38 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 39 39 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.46764 * 299.99916 * 14 12 11 41 41 H 1.08998 * 109.46877 * 59.99890 * 14 12 11 42 42 H 1.08998 * 109.46856 * 179.97438 * 14 12 11 43 43 H 1.09002 * 109.47359 * 184.99877 * 15 12 11 44 44 H 1.09005 * 109.47422 * 304.99979 * 15 12 11 45 45 H 1.08996 * 109.47464 * 59.99823 * 18 16 15 46 46 H 1.09001 * 109.47038 * 180.02562 * 18 16 15 47 47 H 1.08998 * 109.46674 * 299.99313 * 18 16 15 48 48 H 0.97004 * 119.99892 * 25.00961 * 19 16 15 49 49 H 0.97009 * 119.99746 * 179.97438 * 23 22 20 50 50 H 1.08009 * 119.97583 * 179.97438 * 28 7 6 51 51 H 1.08000 * 120.03441 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.1406 2.8850 3.6743 14 6 10.1235 0.9707 3.5740 15 6 11.1955 3.1765 3.0970 16 6 10.9322 4.6285 2.6930 17 1 10.4448 4.6518 1.7183 18 6 12.2595 5.3857 2.6176 19 7 10.0640 5.2626 3.6882 20 6 9.2838 6.3309 3.3349 21 1 9.3080 6.7059 2.3224 22 6 8.4615 6.9321 4.2780 23 7 8.4316 6.4748 5.5118 24 14 7.3977 8.3899 3.7962 25 1 7.6134 8.7074 2.3616 26 1 5.9684 8.0552 4.0200 27 1 7.7660 9.5666 4.6239 28 6 5.2549 2.9853 0.0010 29 6 3.8850 2.8070 0.0003 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.7884 -0.5724 0.0117 36 1 6.2281 -0.2456 0.0032 37 1 8.0671 1.2509 -0.5113 38 1 7.8338 3.0155 -0.5117 39 1 10.0263 2.4075 0.9329 40 1 9.1897 0.4095 3.5415 41 1 10.8676 0.4744 2.9511 42 1 10.4838 1.0182 4.6017 43 1 11.6011 3.1487 4.1083 44 1 11.9113 2.7313 2.4060 45 1 12.9054 4.9140 1.8771 46 1 12.0718 6.4203 2.3303 47 1 12.7468 5.3625 3.5923 48 1 10.0420 4.9256 4.5976 49 1 7.8573 6.8950 6.1711 50 1 5.6690 3.9828 0.0011 51 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136092755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:53 Heat of formation + Delta-G solvation = -78.869310 kcal Electronic energy + Delta-G solvation = -28920.047993 eV Core-core repulsion = 25011.433234 eV Total energy + Delta-G solvation = -3908.614758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30395 -40.61735 -38.76948 -38.04721 -35.97096 -34.01656 -33.62272 -32.48208 -31.87939 -31.48997 -30.38909 -27.85069 -27.52272 -25.65041 -24.97277 -23.42609 -22.74774 -21.99930 -21.27547 -21.11120 -19.29105 -19.23605 -17.95555 -17.30398 -17.05194 -17.03704 -16.65898 -16.22137 -15.89563 -15.62477 -15.47169 -15.17602 -14.85898 -14.52266 -14.44509 -14.41596 -14.19527 -14.16725 -13.59456 -13.40615 -13.36353 -13.19598 -12.97084 -12.85123 -12.80705 -12.78312 -12.64242 -12.52398 -12.43998 -12.19160 -12.13819 -11.79211 -11.67932 -11.63457 -11.52921 -11.38306 -10.91786 -10.73075 -9.95184 -9.87314 -9.05452 -8.93158 -7.91261 -5.16031 0.39077 0.41898 1.42062 1.44359 1.52376 1.85785 2.24994 2.38340 2.56729 2.88123 3.43904 3.76623 3.81478 3.86208 3.93826 4.02432 4.03360 4.10954 4.15263 4.26391 4.32961 4.36163 4.42378 4.45028 4.51564 4.58876 4.68059 4.73018 4.74525 4.82352 4.86201 4.89813 4.91509 4.98571 5.06918 5.08163 5.12944 5.17642 5.26547 5.31044 5.37033 5.38993 5.47057 5.54722 5.65299 5.66184 5.76425 5.83543 6.32179 6.46186 6.78936 7.37736 7.52665 8.18999 8.37810 9.32954 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.003080 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.371607 B = 9089.913696 C =10924.105898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.113 3.887 5 C -0.210 4.210 6 C -0.071 4.071 7 C -0.111 4.111 8 C -0.088 4.088 9 C 0.506 3.494 10 O -0.586 6.586 11 N -0.706 5.706 12 C 0.147 3.853 13 H 0.041 0.959 14 C -0.150 4.150 15 C -0.117 4.117 16 C 0.163 3.837 17 H 0.047 0.953 18 C -0.156 4.156 19 N -0.732 5.732 20 C -0.219 4.219 21 H 0.072 0.928 22 C -0.081 4.081 23 N -0.970 5.970 24 Si 0.959 3.041 25 H -0.263 1.263 26 H -0.303 1.303 27 H -0.294 1.294 28 C -0.081 4.081 29 C -0.172 4.172 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.414 0.586 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.029 0.971 47 H 0.039 0.961 48 H 0.368 0.632 49 H 0.246 0.754 50 H 0.125 0.875 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -18.329 -17.334 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.251 6.251 4 C 0.068 3.932 5 C -0.229 4.229 6 C -0.089 4.089 7 C -0.112 4.112 8 C -0.128 4.128 9 C 0.293 3.707 10 O -0.466 6.466 11 N -0.359 5.359 12 C 0.042 3.958 13 H 0.059 0.941 14 C -0.208 4.208 15 C -0.155 4.155 16 C 0.055 3.945 17 H 0.065 0.935 18 C -0.216 4.216 19 N -0.372 5.372 20 C -0.352 4.352 21 H 0.090 0.910 22 C -0.273 4.273 23 N -0.622 5.622 24 Si 0.790 3.210 25 H -0.187 1.187 26 H -0.232 1.232 27 H -0.221 1.221 28 C -0.100 4.100 29 C -0.191 4.191 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.251 0.749 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.200 0.800 49 H 0.055 0.945 50 H 0.143 0.857 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.049 -18.135 -16.818 24.920 hybrid contribution -0.657 1.146 0.630 1.464 sum -3.705 -16.989 -16.188 23.757 Atomic orbital electron populations 1.21811 0.91462 1.04258 1.03068 1.23077 0.96943 0.80770 1.02258 1.86045 1.18866 1.31470 1.88762 1.19120 0.82752 0.94409 0.96891 1.21429 0.94249 0.98532 1.08677 1.21069 0.94744 0.96910 0.96130 1.19456 0.94953 0.93447 1.03331 1.20663 0.92123 1.07277 0.92714 1.21190 0.82232 0.75184 0.92090 1.90731 1.56447 1.51077 1.48309 1.45855 1.07871 1.73413 1.08739 1.20750 0.96054 0.95894 0.83109 0.94082 1.22065 1.01386 0.95581 1.01770 1.22065 0.95898 0.94201 1.03375 1.20543 0.90246 0.91327 0.92378 0.93510 1.22309 0.98332 1.00003 1.00953 1.42630 1.48826 1.35876 1.09853 1.19543 1.15074 1.05619 0.94956 0.91006 1.25435 1.02820 1.02957 0.96073 1.69814 1.44177 1.44876 1.03366 0.85260 0.78134 0.79718 0.77920 1.18732 1.23154 1.22087 1.21015 0.92566 0.99345 0.97026 1.20541 0.95469 0.95520 1.07523 0.87893 0.92371 0.91630 0.90521 0.91703 0.83269 0.83566 0.84293 0.86410 0.74948 0.94513 0.89755 0.91745 0.91076 0.87377 0.90363 0.95195 0.94165 0.80019 0.94545 0.85661 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.04 0.74 5.46 71.98 0.39 1.14 16 3 O -0.34 -8.69 10.14 -92.39 -0.94 -9.63 16 4 C 0.11 3.16 6.69 22.51 0.15 3.31 16 5 C -0.21 -5.02 9.04 22.37 0.20 -4.81 16 6 C -0.07 -1.68 9.69 22.25 0.22 -1.46 16 7 C -0.11 -2.96 4.37 -19.85 -0.09 -3.05 16 8 C -0.09 -1.90 5.83 29.10 0.17 -1.73 16 9 C 0.51 15.83 7.79 87.66 0.68 16.51 16 10 O -0.59 -25.66 15.70 -3.03 -0.05 -25.71 16 11 N -0.71 -18.63 4.45 -442.52 -1.97 -20.60 16 12 C 0.15 4.63 2.52 44.99 0.11 4.74 16 13 H 0.04 1.85 7.06 -2.38 -0.02 1.84 16 14 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 15 C -0.12 -3.25 4.29 30.59 0.13 -3.12 16 16 C 0.16 5.85 2.84 44.99 0.13 5.97 16 17 H 0.05 1.67 7.56 -2.39 -0.02 1.66 16 18 C -0.16 -5.01 9.49 71.98 0.68 -4.32 16 19 N -0.73 -36.41 4.49 -322.95 -1.45 -37.86 16 20 C -0.22 -12.35 9.93 84.04 0.83 -11.51 16 21 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 22 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 23 N -0.97 -62.30 13.06 21.65 0.28 -62.02 16 24 Si 0.96 48.62 29.55 68.60 2.03 50.65 16 25 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 27 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 28 C -0.08 -2.44 9.69 22.25 0.22 -2.22 16 29 C -0.17 -5.17 9.99 22.37 0.22 -4.95 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.03 7.68 -2.39 -0.02 1.01 16 34 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 35 H 0.15 2.64 6.30 -2.91 -0.02 2.63 16 36 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.14 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.12 2.15 8.08 -2.39 -0.02 2.13 16 39 H 0.41 7.36 8.60 -92.71 -0.80 6.57 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 44 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.37 20.25 7.80 -92.71 -0.72 19.52 16 49 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 50 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 51 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -82.02 420.27 3.25 -78.77 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.61 Total: 40.69 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 5.95 Total: -14.29 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -3.14 Total: -120.48 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.98 Total: -35.34 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -82.02 3.25 -78.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136092755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.095 kcal (2) G-P(sol) polarization free energy of solvation -82.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds