Wall clock time and date at job start Tue Mar 31 2020 19:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46923 * 35.00124 * 12 11 9 14 14 C 1.53006 * 109.47314 * 275.00240 * 12 11 9 15 15 C 1.52998 * 109.47421 * 155.00220 * 12 11 9 16 16 C 1.53000 * 109.47103 * 295.00460 * 15 12 11 17 17 H 1.08996 * 109.46863 * 304.99462 * 16 15 12 18 18 C 1.53005 * 109.47163 * 185.00022 * 16 15 12 19 19 N 1.46501 * 109.47396 * 64.99669 * 16 15 12 20 20 C 1.36934 * 120.00072 * 205.00280 * 19 16 15 21 21 H 1.08002 * 119.99810 * 359.97438 * 20 19 16 22 22 C 1.38807 * 120.00200 * 179.97438 * 20 19 16 23 23 N 1.31614 * 120.00179 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99872 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46923 * 90.00000 * 24 22 20 26 26 H 1.48501 * 109.47290 * 209.99978 * 24 22 20 27 27 H 1.48495 * 109.47170 * 330.00011 * 24 22 20 28 28 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 29 29 C 1.38145 * 120.05942 * 359.97438 * 28 7 6 30 30 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 33 33 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 35 35 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 37 37 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 38 38 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 39 39 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47310 * 300.00262 * 14 12 11 41 41 H 1.09006 * 109.46972 * 59.99970 * 14 12 11 42 42 H 1.08997 * 109.47200 * 179.97438 * 14 12 11 43 43 H 1.09004 * 109.47058 * 55.00324 * 15 12 11 44 44 H 1.08992 * 109.47227 * 175.00071 * 15 12 11 45 45 H 1.09003 * 109.46665 * 299.99859 * 18 16 15 46 46 H 1.08997 * 109.47040 * 59.99519 * 18 16 15 47 47 H 1.08995 * 109.47115 * 180.02562 * 18 16 15 48 48 H 0.97001 * 119.99749 * 25.00125 * 19 16 15 49 49 H 0.97003 * 120.00504 * 180.02562 * 23 22 20 50 50 H 1.08009 * 119.97583 * 179.97438 * 28 7 6 51 51 H 1.08000 * 120.03441 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.2948 1.7163 3.6742 14 6 9.7476 3.8201 3.5742 15 6 11.3550 1.9677 3.0969 16 6 11.4772 0.4972 2.6926 17 1 10.8317 -0.1091 3.3280 18 6 12.9285 0.0418 2.8578 19 7 11.0722 0.3401 1.2935 20 6 10.6062 -0.8677 0.8471 21 1 10.5375 -1.7045 1.5264 22 6 10.2220 -1.0165 -0.4784 23 7 9.7735 -2.1771 -0.9073 24 14 10.3401 0.4311 -1.6532 25 1 11.6767 0.4357 -2.3003 26 1 9.2869 0.3117 -2.6933 27 1 10.1505 1.6967 -0.8998 28 6 5.2549 2.9853 0.0010 29 6 3.8850 2.8070 0.0003 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.7884 -0.5724 0.0117 36 1 6.2281 -0.2456 0.0032 37 1 8.0671 1.2509 -0.5113 38 1 7.8338 3.0155 -0.5117 39 1 10.0263 2.4075 0.9329 40 1 10.3375 4.4925 2.9514 41 1 8.7001 4.1200 3.5418 42 1 10.1071 3.8674 4.6022 43 1 11.9308 2.5836 2.4060 44 1 11.7395 2.0997 4.1082 45 1 13.5741 0.6482 2.2224 46 1 13.2298 0.1587 3.8987 47 1 13.0157 -1.0057 2.5693 48 1 11.1342 1.0916 0.6833 49 1 9.5054 -2.2813 -1.8337 50 1 5.6690 3.9828 0.0011 51 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136092758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:01 Heat of formation + Delta-G solvation = -42.789514 kcal Electronic energy + Delta-G solvation = -29845.562334 eV Core-core repulsion = 25938.512113 eV Total energy + Delta-G solvation = -3907.050221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13902 -39.39109 -37.65183 -36.73486 -34.28456 -32.65197 -32.25135 -31.40188 -30.73621 -30.49206 -29.10059 -26.70317 -26.35095 -24.02752 -23.38319 -22.22988 -21.64737 -20.63525 -20.52260 -19.52302 -18.16315 -17.59831 -16.60843 -16.16475 -16.11250 -15.93735 -15.15840 -14.73591 -14.61746 -14.36811 -14.13399 -13.61124 -13.48115 -13.37597 -13.28769 -13.21906 -12.95545 -12.79482 -12.63370 -12.47157 -12.14322 -12.04832 -11.84072 -11.76877 -11.76411 -11.55892 -11.33838 -11.05715 -10.88474 -10.78027 -10.68395 -10.56057 -10.50954 -10.24468 -10.00638 -9.64120 -9.31529 -9.02913 -8.75862 -8.48434 -7.87992 -7.28917 -5.81469 -3.15643 1.57260 1.63804 3.07268 3.18668 3.21679 3.28936 3.35283 3.67273 4.08948 4.47176 4.78870 4.81310 4.98201 4.99068 5.04487 5.10385 5.13061 5.19666 5.32462 5.34683 5.44959 5.49204 5.49662 5.55158 5.59702 5.61648 5.68912 5.75337 5.84100 5.86591 5.89143 5.92339 5.99091 6.04944 6.13929 6.27484 6.28521 6.32481 6.39703 6.45455 6.48944 6.59864 6.77590 6.89952 6.95430 6.96626 7.05521 7.52941 7.94343 8.04866 8.36769 8.80177 9.14282 9.86114 10.06562 11.37364 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.003532 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.015551 B = 7925.211808 C = 9061.631800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.320 6.320 4 C 0.122 3.878 5 C -0.204 4.204 6 C -0.057 4.057 7 C -0.092 4.092 8 C -0.106 4.106 9 C 0.529 3.471 10 O -0.545 6.545 11 N -0.707 5.707 12 C 0.148 3.852 13 H 0.086 0.914 14 C -0.162 4.162 15 C -0.136 4.136 16 C 0.175 3.825 17 H 0.056 0.944 18 C -0.164 4.164 19 N -0.741 5.741 20 C -0.230 4.230 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.933 5.933 24 Si 0.875 3.125 25 H -0.288 1.288 26 H -0.288 1.288 27 H -0.280 1.280 28 C -0.069 4.069 29 C -0.155 4.155 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.397 0.603 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.039 0.961 47 H 0.057 0.943 48 H 0.354 0.646 49 H 0.258 0.742 50 H 0.124 0.876 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 10.520 2.942 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.235 6.235 4 C 0.077 3.923 5 C -0.223 4.223 6 C -0.075 4.075 7 C -0.093 4.093 8 C -0.145 4.145 9 C 0.315 3.685 10 O -0.422 6.422 11 N -0.361 5.361 12 C 0.044 3.956 13 H 0.104 0.896 14 C -0.220 4.220 15 C -0.175 4.175 16 C 0.066 3.934 17 H 0.074 0.926 18 C -0.224 4.224 19 N -0.385 5.385 20 C -0.361 4.361 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.581 5.581 24 Si 0.707 3.293 25 H -0.215 1.215 26 H -0.214 1.214 27 H -0.207 1.207 28 C -0.088 4.088 29 C -0.173 4.173 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.234 0.766 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.188 0.812 49 H 0.069 0.931 50 H 0.142 0.858 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.016 10.333 3.586 14.175 hybrid contribution 0.667 0.596 -1.405 1.665 sum -8.349 10.929 2.181 13.925 Atomic orbital electron populations 1.21764 0.92971 1.02718 1.03300 1.22758 0.95587 0.82270 1.01619 1.86015 1.19382 1.29063 1.89024 1.18939 0.81893 0.94230 0.97252 1.21177 0.94203 0.97865 1.09040 1.20985 0.94441 0.97227 0.94881 1.19212 0.93816 0.93376 1.02882 1.20769 0.93345 1.04667 0.95746 1.20203 0.82228 0.75345 0.90691 1.90649 1.55392 1.50014 1.46176 1.46141 1.07934 1.73598 1.08397 1.20829 0.94959 0.96176 0.83679 0.89588 1.22202 1.02113 0.97014 1.00688 1.22242 0.94922 0.98338 1.01956 1.20247 0.93681 0.92529 0.86953 0.92572 1.22394 0.98849 1.02175 0.99000 1.42819 1.78676 1.11089 1.05961 1.19074 1.33914 0.88465 0.94610 0.89292 1.24621 1.01783 0.96105 0.96663 1.69676 1.50098 1.22472 1.15870 0.86885 0.77793 0.82606 0.81966 1.21491 1.21450 1.20729 1.20723 0.92113 0.98277 0.97646 1.20248 0.94901 0.94538 1.07662 0.91672 0.90473 0.91635 0.92026 0.91967 0.85626 0.85057 0.87717 0.88901 0.76552 0.92950 0.92362 0.92045 0.91928 0.90428 0.93728 0.94227 0.92395 0.81239 0.93126 0.85829 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.05 0.57 5.46 37.16 0.20 0.77 16 3 O -0.32 -4.47 10.14 -19.41 -0.20 -4.67 16 4 C 0.12 1.88 6.69 -39.21 -0.26 1.61 16 5 C -0.20 -3.26 9.04 -39.43 -0.36 -3.62 16 6 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 7 C -0.09 -1.61 4.37 -104.60 -0.46 -2.06 16 8 C -0.11 -1.85 5.38 -29.03 -0.16 -2.01 16 9 C 0.53 10.01 7.79 -10.98 -0.09 9.93 16 10 O -0.54 -11.77 15.70 5.56 0.09 -11.69 16 11 N -0.71 -12.03 3.80 -53.80 -0.20 -12.24 16 12 C 0.15 2.27 2.57 -67.93 -0.17 2.10 16 13 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 14 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 15 C -0.14 -1.90 4.43 -26.73 -0.12 -2.02 16 16 C 0.18 3.09 2.89 -67.93 -0.20 2.90 16 17 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 18 C -0.16 -2.67 9.49 37.16 0.35 -2.32 16 19 N -0.74 -15.65 3.65 -53.43 -0.19 -15.84 16 20 C -0.23 -6.03 10.41 -15.06 -0.16 -6.18 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 22 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -27.82 13.97 55.49 0.78 -27.04 16 24 Si 0.88 19.97 25.12 -169.99 -4.27 15.70 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -5.39 4.58 56.52 0.26 -5.13 16 28 C -0.07 -1.06 9.69 -39.61 -0.38 -1.45 16 29 C -0.15 -2.30 9.99 -39.43 -0.39 -2.69 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 34 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 35 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 36 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 37 H 0.10 2.04 4.92 -51.93 -0.26 1.79 16 38 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 39 H 0.40 6.60 5.10 -40.82 -0.21 6.39 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.35 7.14 3.78 -40.82 -0.15 6.99 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 51 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -31.71 403.60 -8.45 -40.16 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -8.60 Total: 18.54 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.93 Total: -9.00 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.38 Total: -55.13 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.11 Total: -16.35 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.27 Total: 15.70 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.71 -8.45 -40.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136092758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.633 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds