Wall clock time and date at job start Tue Mar 31 2020 19:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46923 * 35.00124 * 12 11 9 14 14 C 1.53006 * 109.47314 * 275.00240 * 12 11 9 15 15 C 1.52998 * 109.47421 * 155.00220 * 12 11 9 16 16 C 1.53000 * 109.47103 * 295.00460 * 15 12 11 17 17 H 1.08996 * 109.46863 * 304.99462 * 16 15 12 18 18 C 1.53005 * 109.47163 * 185.00022 * 16 15 12 19 19 N 1.46501 * 109.47396 * 64.99669 * 16 15 12 20 20 C 1.36934 * 120.00072 * 205.00280 * 19 16 15 21 21 H 1.08002 * 119.99810 * 359.97438 * 20 19 16 22 22 C 1.38807 * 120.00200 * 179.97438 * 20 19 16 23 23 N 1.31614 * 120.00179 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99872 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46923 * 90.00000 * 24 22 20 26 26 H 1.48501 * 109.47290 * 209.99978 * 24 22 20 27 27 H 1.48495 * 109.47170 * 330.00011 * 24 22 20 28 28 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 29 29 C 1.38145 * 120.05942 * 359.97438 * 28 7 6 30 30 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 33 33 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 35 35 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 37 37 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 38 38 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 39 39 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47310 * 300.00262 * 14 12 11 41 41 H 1.09006 * 109.46972 * 59.99970 * 14 12 11 42 42 H 1.08997 * 109.47200 * 179.97438 * 14 12 11 43 43 H 1.09004 * 109.47058 * 55.00324 * 15 12 11 44 44 H 1.08992 * 109.47227 * 175.00071 * 15 12 11 45 45 H 1.09003 * 109.46665 * 299.99859 * 18 16 15 46 46 H 1.08997 * 109.47040 * 59.99519 * 18 16 15 47 47 H 1.08995 * 109.47115 * 180.02562 * 18 16 15 48 48 H 0.97001 * 119.99749 * 25.00125 * 19 16 15 49 49 H 0.97003 * 120.00504 * 180.02562 * 23 22 20 50 50 H 1.08009 * 119.97583 * 179.97438 * 28 7 6 51 51 H 1.08000 * 120.03441 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.2948 1.7163 3.6742 14 6 9.7476 3.8201 3.5742 15 6 11.3550 1.9677 3.0969 16 6 11.4772 0.4972 2.6926 17 1 10.8317 -0.1091 3.3280 18 6 12.9285 0.0418 2.8578 19 7 11.0722 0.3401 1.2935 20 6 10.6062 -0.8677 0.8471 21 1 10.5375 -1.7045 1.5264 22 6 10.2220 -1.0165 -0.4784 23 7 9.7735 -2.1771 -0.9073 24 14 10.3401 0.4311 -1.6532 25 1 11.6767 0.4357 -2.3003 26 1 9.2869 0.3117 -2.6933 27 1 10.1505 1.6967 -0.8998 28 6 5.2549 2.9853 0.0010 29 6 3.8850 2.8070 0.0003 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.7884 -0.5724 0.0117 36 1 6.2281 -0.2456 0.0032 37 1 8.0671 1.2509 -0.5113 38 1 7.8338 3.0155 -0.5117 39 1 10.0263 2.4075 0.9329 40 1 10.3375 4.4925 2.9514 41 1 8.7001 4.1200 3.5418 42 1 10.1071 3.8674 4.6022 43 1 11.9308 2.5836 2.4060 44 1 11.7395 2.0997 4.1082 45 1 13.5741 0.6482 2.2224 46 1 13.2298 0.1587 3.8987 47 1 13.0157 -1.0057 2.5693 48 1 11.1342 1.0916 0.6833 49 1 9.5054 -2.2813 -1.8337 50 1 5.6690 3.9828 0.0011 51 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136092758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:00 Heat of formation + Delta-G solvation = -62.372476 kcal Electronic energy + Delta-G solvation = -29846.411515 eV Core-core repulsion = 25938.512113 eV Total energy + Delta-G solvation = -3907.899402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37028 -40.70949 -38.88101 -38.15555 -35.85705 -34.17731 -33.67256 -32.63429 -32.03238 -31.72029 -30.67425 -27.92969 -27.56262 -25.31014 -25.00498 -23.47199 -22.77420 -22.00524 -21.85609 -20.98734 -19.55726 -19.27670 -18.04229 -17.49474 -17.12715 -17.06759 -16.64589 -16.30752 -15.97469 -15.91612 -15.38018 -15.01511 -14.99387 -14.57307 -14.48350 -14.34025 -14.24706 -14.15422 -14.09057 -13.59385 -13.41025 -13.33105 -13.02454 -12.87154 -12.82187 -12.74509 -12.63995 -12.50624 -12.37986 -12.32389 -12.01322 -11.78880 -11.73023 -11.66438 -11.58515 -11.44833 -10.96324 -10.77730 -9.99479 -9.92225 -9.18560 -9.09826 -7.95387 -5.26947 0.34998 0.36906 1.23306 1.40077 1.48226 1.77048 2.21552 2.35664 2.50470 2.82869 3.36377 3.63660 3.70603 3.75600 3.81185 3.88632 4.01010 4.06446 4.10965 4.16905 4.24896 4.31354 4.34707 4.36378 4.46312 4.55198 4.58382 4.65653 4.68383 4.81069 4.85504 4.87590 4.91439 4.91487 5.02432 5.05366 5.08665 5.14849 5.16881 5.25786 5.35103 5.36591 5.38710 5.59710 5.62736 5.73316 5.76289 5.84080 6.26458 6.40429 6.65057 7.14453 7.38087 7.88997 8.10141 9.26920 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.003532 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.015551 B = 7925.211808 C = 9061.631800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 O -0.325 6.325 4 C 0.118 3.882 5 C -0.211 4.211 6 C -0.086 4.086 7 C -0.110 4.110 8 C -0.105 4.105 9 C 0.523 3.477 10 O -0.579 6.579 11 N -0.703 5.703 12 C 0.143 3.857 13 H 0.053 0.947 14 C -0.150 4.150 15 C -0.121 4.121 16 C 0.166 3.834 17 H 0.028 0.972 18 C -0.156 4.156 19 N -0.738 5.738 20 C -0.214 4.214 21 H 0.043 0.957 22 C -0.063 4.063 23 N -0.988 5.988 24 Si 0.942 3.058 25 H -0.289 1.289 26 H -0.299 1.299 27 H -0.229 1.229 28 C -0.066 4.066 29 C -0.155 4.155 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.400 0.600 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.024 0.976 48 H 0.363 0.637 49 H 0.253 0.747 50 H 0.154 0.846 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.786 14.542 3.240 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.073 3.927 5 C -0.230 4.230 6 C -0.104 4.104 7 C -0.111 4.111 8 C -0.145 4.145 9 C 0.310 3.690 10 O -0.459 6.459 11 N -0.356 5.356 12 C 0.039 3.961 13 H 0.072 0.928 14 C -0.208 4.208 15 C -0.160 4.160 16 C 0.058 3.942 17 H 0.046 0.954 18 C -0.215 4.215 19 N -0.383 5.383 20 C -0.346 4.346 21 H 0.061 0.939 22 C -0.254 4.254 23 N -0.639 5.639 24 Si 0.771 3.229 25 H -0.217 1.217 26 H -0.227 1.227 27 H -0.153 1.153 28 C -0.084 4.084 29 C -0.173 4.173 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.238 0.762 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.130 0.870 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.043 0.957 48 H 0.198 0.802 49 H 0.062 0.938 50 H 0.171 0.829 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.541 14.400 3.941 17.200 hybrid contribution 0.488 -0.793 -1.364 1.651 sum -8.053 13.608 2.577 16.021 Atomic orbital electron populations 1.21785 0.90704 1.04209 1.03467 1.23062 0.97391 0.81003 1.01832 1.86023 1.18326 1.30926 1.88707 1.19103 0.82557 0.94336 0.96702 1.21283 0.93593 0.99028 1.09088 1.20917 0.95104 0.97037 0.97333 1.19344 0.94214 0.93670 1.03838 1.20806 0.93400 1.05414 0.94876 1.20507 0.82620 0.74883 0.90975 1.90627 1.56342 1.51696 1.47251 1.46187 1.07346 1.72681 1.09351 1.20976 0.95232 0.97579 0.82350 0.92841 1.22089 1.01494 0.94905 1.02343 1.22170 0.94244 0.95054 1.04497 1.20480 0.93963 0.95313 0.84457 0.95397 1.22261 0.97674 1.00190 1.01394 1.42717 1.78496 1.09398 1.07710 1.18892 1.32701 0.89157 0.93823 0.93939 1.25400 1.02074 0.99219 0.98662 1.69898 1.52357 1.25628 1.16003 0.85771 0.76881 0.81088 0.79197 1.21681 1.22664 1.15306 1.21024 0.92116 0.98852 0.96439 1.20630 0.95228 0.95129 1.06301 0.91345 0.88335 0.91580 0.91599 0.92047 0.84597 0.88042 0.90035 0.85220 0.76181 0.90844 0.94190 0.89773 0.89594 0.86956 0.92400 0.90908 0.95661 0.80220 0.93811 0.82862 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.04 0.87 5.46 71.98 0.39 1.26 16 3 O -0.33 -8.76 10.14 -92.39 -0.94 -9.70 16 4 C 0.12 3.58 6.69 22.51 0.15 3.74 16 5 C -0.21 -6.98 9.04 22.37 0.20 -6.78 16 6 C -0.09 -3.25 9.69 22.25 0.22 -3.03 16 7 C -0.11 -3.83 4.37 -19.85 -0.09 -3.92 16 8 C -0.11 -3.60 5.38 29.10 0.16 -3.44 16 9 C 0.52 19.51 7.79 87.66 0.68 20.20 16 10 O -0.58 -25.35 15.70 -3.03 -0.05 -25.40 16 11 N -0.70 -22.63 3.80 -442.52 -1.68 -24.32 16 12 C 0.14 4.08 2.57 44.99 0.12 4.19 16 13 H 0.05 1.89 7.58 -2.39 -0.02 1.87 16 14 C -0.15 -3.30 9.48 71.98 0.68 -2.62 16 15 C -0.12 -2.96 4.43 30.59 0.14 -2.82 16 16 C 0.17 5.68 2.89 44.99 0.13 5.81 16 17 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 18 C -0.16 -4.78 9.49 71.98 0.68 -4.09 16 19 N -0.74 -30.89 3.65 -322.94 -1.18 -32.07 16 20 C -0.21 -11.69 10.41 84.03 0.87 -10.81 16 21 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 22 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 23 N -0.99 -62.34 13.97 21.65 0.30 -62.04 16 24 Si 0.94 41.73 25.12 68.60 1.72 43.46 16 25 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.23 -7.95 4.58 99.48 0.46 -7.49 16 28 C -0.07 -1.92 9.69 22.25 0.22 -1.70 16 29 C -0.15 -4.31 9.99 22.37 0.22 -4.08 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.31 7.68 -2.39 -0.02 1.29 16 34 H 0.06 1.28 7.65 -2.39 -0.02 1.26 16 35 H 0.14 3.98 6.30 -2.91 -0.02 3.97 16 36 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.08 3.18 4.92 -2.39 -0.01 3.17 16 38 H 0.13 3.34 8.08 -2.39 -0.02 3.32 16 39 H 0.40 12.04 5.10 -92.71 -0.47 11.56 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.36 13.86 3.78 -92.71 -0.35 13.51 16 49 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 50 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 51 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -75.45 403.60 4.01 -71.44 By element: Atomic # 1 Polarization: 51.36 SS G_CDS: -0.16 Total: 51.20 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 5.98 Total: -12.57 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -2.56 Total: -118.43 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.98 Total: -35.10 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.72 Total: 43.46 kcal Total: -75.45 4.01 -71.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136092758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.064 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds