Wall clock time and date at job start Tue Mar 31 2020 19:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46741 * 2 1 4 4 C 1.35903 * 116.99882 * 180.02562 * 3 2 1 5 5 C 1.38727 * 120.05843 * 179.97438 * 4 3 2 6 6 C 1.38148 * 119.94706 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05126 * 0.02711 * 6 5 4 8 8 C 1.50700 * 119.93810 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47222 * 90.00150 * 8 7 6 10 10 O 1.21285 * 119.99650 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00479 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00457 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46927 * 34.99720 * 12 11 9 14 14 C 1.53007 * 109.46926 * 275.00188 * 12 11 9 15 15 C 1.52997 * 109.47416 * 155.00022 * 12 11 9 16 16 C 1.52999 * 109.47080 * 295.00201 * 15 12 11 17 17 H 1.09004 * 109.47434 * 54.99895 * 16 15 12 18 18 C 1.52997 * 109.47114 * 174.99701 * 16 15 12 19 19 N 1.46498 * 109.46963 * 294.99494 * 16 15 12 20 20 C 1.36943 * 119.99752 * 154.72381 * 19 16 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.38266 * 120.11149 * 0.24828 * 7 6 5 29 29 C 1.38136 * 120.05650 * 359.45039 * 28 7 6 30 30 H 1.09003 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47492 * 300.00727 * 1 2 3 32 32 H 1.09006 * 109.47142 * 60.00549 * 1 2 3 33 33 H 1.09000 * 109.47319 * 240.00018 * 2 1 3 34 34 H 1.08999 * 109.46778 * 119.99321 * 2 1 3 35 35 H 1.08003 * 120.02950 * 0.02562 * 5 4 3 36 36 H 1.07999 * 119.97018 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47673 * 329.99610 * 8 7 6 38 38 H 1.09001 * 109.46767 * 209.99518 * 8 7 6 39 39 H 0.97009 * 119.99372 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.46639 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46936 * 299.99527 * 14 12 11 42 42 H 1.09000 * 109.46920 * 60.00186 * 14 12 11 43 43 H 1.08997 * 109.47302 * 174.99664 * 15 12 11 44 44 H 1.09007 * 109.46917 * 55.00199 * 15 12 11 45 45 H 1.09009 * 109.47238 * 59.99946 * 18 16 15 46 46 H 1.08997 * 109.47293 * 179.97438 * 18 16 15 47 47 H 1.09003 * 109.47189 * 300.00067 * 18 16 15 48 48 H 0.97001 * 120.00384 * 335.00737 * 19 16 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 50 50 H 1.08000 * 119.96771 * 179.70425 * 28 7 6 51 51 H 1.08003 * 120.02671 * 180.24767 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 3.8851 2.8069 -0.0011 6 6 5.2550 2.9853 -0.0022 7 6 6.0962 1.8879 -0.0033 8 6 7.5901 2.0855 -0.0050 9 6 8.0899 2.1512 1.4152 10 8 7.3095 2.0482 2.3379 11 7 9.4038 2.3244 1.6600 12 6 9.8895 2.3888 3.0406 13 1 9.3004 1.7169 3.6647 14 6 9.7534 3.8206 3.5628 15 6 11.3597 1.9676 3.0842 16 6 11.4811 0.4968 2.6807 17 1 11.0150 0.3476 1.7067 18 6 12.9592 0.1095 2.6033 19 7 10.8085 -0.3401 3.6774 20 6 10.3262 -1.5720 3.3239 21 1 10.4457 -1.9285 2.3114 22 6 9.6838 -2.3626 4.2668 23 7 9.5378 -1.9279 5.5006 24 14 9.0266 -4.0434 3.7848 25 1 9.3168 -4.2956 2.3504 26 1 9.6821 -5.0874 4.6129 27 1 7.5590 -4.0837 4.0080 28 6 5.5689 0.6098 -0.0085 29 6 4.1998 0.4261 -0.0011 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 3.2284 3.6644 -0.0007 36 1 5.6691 3.9827 -0.0022 37 1 7.8332 3.0154 -0.5191 38 1 8.0664 1.2508 -0.5195 39 1 10.0280 2.4063 0.9219 40 1 10.1152 3.8686 4.5898 41 1 10.3426 4.4925 2.9386 42 1 8.7060 4.1206 3.5317 43 1 11.7458 2.1002 4.0949 44 1 11.9347 2.5830 2.3921 45 1 13.4254 0.2587 3.5773 46 1 13.0457 -0.9384 2.3163 47 1 13.4597 0.7322 1.8618 48 1 10.7011 -0.0199 4.5867 49 1 9.0893 -2.4805 6.1596 50 1 6.2281 -0.2457 -0.0141 51 1 3.7885 -0.5726 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136092759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:04 Heat of formation + Delta-G solvation = -56.545544 kcal Electronic energy + Delta-G solvation = -28974.115589 eV Core-core repulsion = 25066.468862 eV Total energy + Delta-G solvation = -3907.646727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.27619 -39.42878 -37.70374 -36.63451 -34.36320 -32.73589 -32.11649 -31.47499 -30.87998 -30.32683 -28.56849 -26.82881 -26.25054 -24.15291 -23.59129 -22.35749 -21.74125 -20.78979 -20.03781 -19.65731 -18.31332 -17.27454 -16.67129 -16.21653 -16.10118 -16.03499 -15.15950 -14.88014 -14.54147 -14.36288 -13.93346 -13.72112 -13.61825 -13.52173 -13.39139 -13.30354 -12.94171 -12.82585 -12.67748 -12.18364 -12.06708 -11.95548 -11.86051 -11.70863 -11.64652 -11.62498 -11.42148 -10.99222 -10.82334 -10.81180 -10.74017 -10.58247 -10.37281 -10.17826 -9.85194 -9.59627 -9.41790 -8.92705 -8.85395 -8.60096 -8.04392 -6.88570 -5.70213 -2.97863 1.40913 1.45790 3.08057 3.10352 3.45994 3.49863 3.50442 3.53546 3.93164 4.64228 4.69607 4.70892 4.76876 4.89301 4.91016 5.03592 5.11534 5.22532 5.26658 5.31194 5.38372 5.47623 5.50815 5.53509 5.54550 5.64155 5.65348 5.73670 5.75602 5.79414 5.93750 5.99454 6.04934 6.07838 6.17401 6.27923 6.32616 6.40132 6.40879 6.48147 6.60699 6.67126 6.77039 6.80251 6.87170 7.00209 7.10268 7.39020 7.74747 7.91436 8.48202 8.68919 9.59444 10.17528 10.51506 11.52718 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.003312 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.670871 B = 8453.050523 C =10637.063065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.319 6.319 4 C 0.125 3.875 5 C -0.153 4.153 6 C -0.067 4.067 7 C -0.097 4.097 8 C -0.098 4.098 9 C 0.512 3.488 10 O -0.524 6.524 11 N -0.720 5.720 12 C 0.144 3.856 13 H 0.104 0.896 14 C -0.160 4.160 15 C -0.130 4.130 16 C 0.172 3.828 17 H 0.046 0.954 18 C -0.165 4.165 19 N -0.720 5.720 20 C -0.232 4.232 21 H 0.067 0.933 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.901 3.099 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.292 1.292 28 C -0.061 4.061 29 C -0.205 4.205 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.393 0.607 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.034 0.966 48 H 0.383 0.617 49 H 0.253 0.747 50 H 0.126 0.874 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 11.148 -14.677 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.234 6.234 4 C 0.080 3.920 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.098 4.098 8 C -0.139 4.139 9 C 0.298 3.702 10 O -0.399 6.399 11 N -0.371 5.371 12 C 0.040 3.960 13 H 0.122 0.878 14 C -0.219 4.219 15 C -0.169 4.169 16 C 0.062 3.938 17 H 0.064 0.936 18 C -0.225 4.225 19 N -0.362 5.362 20 C -0.364 4.364 21 H 0.085 0.915 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.733 3.267 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.079 4.079 29 C -0.224 4.224 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.216 0.784 49 H 0.063 0.937 50 H 0.144 0.856 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.498 11.046 -14.069 19.803 hybrid contribution 0.111 -1.214 -0.141 1.227 sum -8.387 9.832 -14.211 19.208 Atomic orbital electron populations 1.21770 0.92861 1.02796 1.03388 1.22774 0.95726 0.82137 1.01584 1.86032 1.19290 1.29187 1.88863 1.18959 0.82020 0.94222 0.96795 1.20302 0.95044 0.94628 1.07208 1.20733 0.92109 0.98363 0.97310 1.19177 0.93893 0.93312 1.03413 1.20618 0.93282 1.04541 0.95409 1.20404 0.82456 0.76423 0.90942 1.90751 1.55139 1.48061 1.45988 1.45980 1.07747 1.74552 1.08828 1.20991 0.95685 0.96462 0.82871 0.87790 1.22179 1.01789 0.96915 1.00978 1.22164 0.94549 0.97914 1.02296 1.20216 0.91362 0.88433 0.93804 0.93646 1.22460 0.99171 1.00973 0.99944 1.42403 1.67626 1.16937 1.09216 1.19185 1.29155 0.92844 0.95196 0.91518 1.24688 1.01690 0.98633 0.95796 1.69657 1.48397 1.37494 1.02364 0.86204 0.78522 0.84653 0.77346 1.20713 1.21987 1.21970 1.20844 0.94382 0.96857 0.95786 1.21177 0.94284 0.97951 1.08951 0.90423 0.91515 0.91659 0.92091 0.91862 0.85482 0.85683 0.88475 0.88160 0.77403 0.91893 0.93244 0.92592 0.90771 0.92135 0.93566 0.92958 0.94737 0.78362 0.93674 0.85642 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.10 10.14 -19.44 -0.20 -4.30 16 4 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 5 C -0.15 -2.00 9.99 -39.43 -0.39 -2.40 16 6 C -0.07 -0.86 9.69 -39.60 -0.38 -1.24 16 7 C -0.10 -1.34 4.37 -104.60 -0.46 -1.79 16 8 C -0.10 -1.17 5.83 -29.04 -0.17 -1.34 16 9 C 0.51 8.26 7.79 -10.99 -0.09 8.17 16 10 O -0.52 -11.16 15.70 5.55 0.09 -11.07 16 11 N -0.72 -10.24 4.45 -53.81 -0.24 -10.48 16 12 C 0.14 2.34 2.52 -67.93 -0.17 2.17 16 13 H 0.10 2.26 7.05 -51.93 -0.37 1.89 16 14 C -0.16 -2.24 9.48 37.16 0.35 -1.88 16 15 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 16 C 0.17 3.23 2.84 -67.93 -0.19 3.04 16 17 H 0.05 0.87 7.56 -51.93 -0.39 0.47 16 18 C -0.17 -2.87 9.49 37.16 0.35 -2.51 16 19 N -0.72 -17.66 4.49 -53.43 -0.24 -17.90 16 20 C -0.23 -6.44 9.93 -15.06 -0.15 -6.59 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 24 Si 0.90 22.91 29.55 -169.99 -5.02 17.88 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 29 C -0.20 -2.82 9.04 -39.43 -0.36 -3.18 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 34 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.10 1.04 8.08 -51.93 -0.42 0.63 16 39 H 0.39 4.28 8.60 -40.82 -0.35 3.93 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 49 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 51 H 0.13 1.50 6.30 -52.48 -0.33 1.17 16 LS Contribution 420.27 15.07 6.33 6.33 Total: -1.00 -34.98 420.27 -9.34 -44.32 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -8.86 Total: 13.07 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -1.93 Total: -9.94 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.25 Total: -56.30 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.11 Total: -15.37 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.98 -9.34 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136092759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.229 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds