Wall clock time and date at job start Tue Mar 31 2020 19:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46741 * 2 1 4 4 C 1.35903 * 116.99882 * 180.02562 * 3 2 1 5 5 C 1.38727 * 120.05843 * 179.97438 * 4 3 2 6 6 C 1.38148 * 119.94706 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05126 * 0.02711 * 6 5 4 8 8 C 1.50700 * 119.93810 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47222 * 90.00150 * 8 7 6 10 10 O 1.21285 * 119.99650 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00479 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00457 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46927 * 34.99720 * 12 11 9 14 14 C 1.53007 * 109.46926 * 275.00188 * 12 11 9 15 15 C 1.52997 * 109.47416 * 155.00022 * 12 11 9 16 16 C 1.52999 * 109.47080 * 295.00201 * 15 12 11 17 17 H 1.09004 * 109.47434 * 54.99895 * 16 15 12 18 18 C 1.52997 * 109.47114 * 174.99701 * 16 15 12 19 19 N 1.46498 * 109.46963 * 294.99494 * 16 15 12 20 20 C 1.36943 * 119.99752 * 154.72381 * 19 16 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.38266 * 120.11149 * 0.24828 * 7 6 5 29 29 C 1.38136 * 120.05650 * 359.45039 * 28 7 6 30 30 H 1.09003 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47492 * 300.00727 * 1 2 3 32 32 H 1.09006 * 109.47142 * 60.00549 * 1 2 3 33 33 H 1.09000 * 109.47319 * 240.00018 * 2 1 3 34 34 H 1.08999 * 109.46778 * 119.99321 * 2 1 3 35 35 H 1.08003 * 120.02950 * 0.02562 * 5 4 3 36 36 H 1.07999 * 119.97018 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47673 * 329.99610 * 8 7 6 38 38 H 1.09001 * 109.46767 * 209.99518 * 8 7 6 39 39 H 0.97009 * 119.99372 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.46639 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46936 * 299.99527 * 14 12 11 42 42 H 1.09000 * 109.46920 * 60.00186 * 14 12 11 43 43 H 1.08997 * 109.47302 * 174.99664 * 15 12 11 44 44 H 1.09007 * 109.46917 * 55.00199 * 15 12 11 45 45 H 1.09009 * 109.47238 * 59.99946 * 18 16 15 46 46 H 1.08997 * 109.47293 * 179.97438 * 18 16 15 47 47 H 1.09003 * 109.47189 * 300.00067 * 18 16 15 48 48 H 0.97001 * 120.00384 * 335.00737 * 19 16 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 50 50 H 1.08000 * 119.96771 * 179.70425 * 28 7 6 51 51 H 1.08003 * 120.02671 * 180.24767 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 3.8851 2.8069 -0.0011 6 6 5.2550 2.9853 -0.0022 7 6 6.0962 1.8879 -0.0033 8 6 7.5901 2.0855 -0.0050 9 6 8.0899 2.1512 1.4152 10 8 7.3095 2.0482 2.3379 11 7 9.4038 2.3244 1.6600 12 6 9.8895 2.3888 3.0406 13 1 9.3004 1.7169 3.6647 14 6 9.7534 3.8206 3.5628 15 6 11.3597 1.9676 3.0842 16 6 11.4811 0.4968 2.6807 17 1 11.0150 0.3476 1.7067 18 6 12.9592 0.1095 2.6033 19 7 10.8085 -0.3401 3.6774 20 6 10.3262 -1.5720 3.3239 21 1 10.4457 -1.9285 2.3114 22 6 9.6838 -2.3626 4.2668 23 7 9.5378 -1.9279 5.5006 24 14 9.0266 -4.0434 3.7848 25 1 9.3168 -4.2956 2.3504 26 1 9.6821 -5.0874 4.6129 27 1 7.5590 -4.0837 4.0080 28 6 5.5689 0.6098 -0.0085 29 6 4.1998 0.4261 -0.0011 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 3.2284 3.6644 -0.0007 36 1 5.6691 3.9827 -0.0022 37 1 7.8332 3.0154 -0.5191 38 1 8.0664 1.2508 -0.5195 39 1 10.0280 2.4063 0.9219 40 1 10.1152 3.8686 4.5898 41 1 10.3426 4.4925 2.9386 42 1 8.7060 4.1206 3.5317 43 1 11.7458 2.1002 4.0949 44 1 11.9347 2.5830 2.3921 45 1 13.4254 0.2587 3.5773 46 1 13.0457 -0.9384 2.3163 47 1 13.4597 0.7322 1.8618 48 1 10.7011 -0.0199 4.5867 49 1 9.0893 -2.4805 6.1596 50 1 6.2281 -0.2457 -0.0141 51 1 3.7885 -0.5726 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136092759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:03 Heat of formation + Delta-G solvation = -78.966492 kcal Electronic energy + Delta-G solvation = -28975.087834 eV Core-core repulsion = 25066.468862 eV Total energy + Delta-G solvation = -3908.618973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.30613 -40.61974 -38.77228 -38.04984 -35.97256 -34.02045 -33.62965 -32.49706 -31.88794 -31.48812 -30.39314 -27.85236 -27.52403 -25.65553 -24.99431 -23.42730 -22.75630 -21.99620 -21.27645 -21.11392 -19.29686 -19.24210 -17.95735 -17.28309 -17.08544 -17.06737 -16.68395 -16.16814 -15.89443 -15.63116 -15.41054 -15.35148 -14.77302 -14.53139 -14.43996 -14.39552 -14.25913 -14.15272 -13.59122 -13.47203 -13.34174 -13.19310 -12.97565 -12.85728 -12.80739 -12.78602 -12.64601 -12.52651 -12.45383 -12.19343 -12.14462 -11.79483 -11.69263 -11.66265 -11.53362 -11.38646 -10.92212 -10.73313 -9.95200 -9.87444 -9.06029 -8.93620 -7.91618 -5.16554 0.39258 0.41304 1.41389 1.43050 1.51546 1.85635 2.23380 2.38060 2.56110 2.87998 3.43485 3.76605 3.80231 3.85927 3.92758 3.99755 4.02131 4.10291 4.14590 4.26415 4.30999 4.33939 4.41141 4.45205 4.52717 4.58697 4.68463 4.72419 4.74428 4.82213 4.86011 4.88776 4.89835 4.98390 5.06371 5.07947 5.12718 5.16094 5.26490 5.30754 5.38178 5.38885 5.46703 5.54160 5.64968 5.65813 5.76260 5.82638 6.31763 6.42881 6.78734 7.37226 7.52508 8.18508 8.37441 9.32666 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.003312 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.670871 B = 8453.050523 C =10637.063065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.331 6.331 4 C 0.112 3.888 5 C -0.163 4.163 6 C -0.070 4.070 7 C -0.111 4.111 8 C -0.089 4.089 9 C 0.505 3.495 10 O -0.586 6.586 11 N -0.706 5.706 12 C 0.147 3.853 13 H 0.041 0.959 14 C -0.150 4.150 15 C -0.117 4.117 16 C 0.163 3.837 17 H 0.047 0.953 18 C -0.156 4.156 19 N -0.732 5.732 20 C -0.220 4.220 21 H 0.072 0.928 22 C -0.080 4.080 23 N -0.971 5.971 24 Si 0.959 3.041 25 H -0.263 1.263 26 H -0.294 1.294 27 H -0.303 1.303 28 C -0.083 4.083 29 C -0.217 4.217 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.414 0.586 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.039 0.961 46 H 0.029 0.971 47 H 0.078 0.922 48 H 0.368 0.632 49 H 0.246 0.754 50 H 0.122 0.878 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 12.606 -17.348 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.067 3.933 5 C -0.182 4.182 6 C -0.087 4.087 7 C -0.112 4.112 8 C -0.128 4.128 9 C 0.293 3.707 10 O -0.466 6.466 11 N -0.359 5.359 12 C 0.042 3.958 13 H 0.059 0.941 14 C -0.208 4.208 15 C -0.156 4.156 16 C 0.055 3.945 17 H 0.065 0.935 18 C -0.216 4.216 19 N -0.372 5.372 20 C -0.353 4.353 21 H 0.090 0.910 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.790 3.210 25 H -0.187 1.187 26 H -0.221 1.221 27 H -0.231 1.231 28 C -0.102 4.102 29 C -0.236 4.236 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.251 0.749 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.096 0.904 48 H 0.200 0.800 49 H 0.055 0.945 50 H 0.140 0.860 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.138 12.522 -16.831 22.160 hybrid contribution -0.266 -1.611 0.637 1.753 sum -7.404 10.911 -16.194 20.884 Atomic orbital electron populations 1.21793 0.90994 1.04175 1.03371 1.23035 0.97232 0.81019 1.01814 1.86024 1.18784 1.30934 1.88787 1.19181 0.82537 0.94622 0.96983 1.20636 0.95719 0.94992 1.06828 1.21067 0.91979 0.99341 0.96352 1.19462 0.95196 0.93220 1.03274 1.20664 0.91982 1.07409 0.92727 1.21190 0.82401 0.75016 0.92090 1.90733 1.56723 1.50909 1.48207 1.45856 1.07771 1.73504 1.08747 1.20748 0.95330 0.96586 0.83127 0.94082 1.22069 1.01221 0.95769 1.01775 1.22068 0.94251 0.95862 1.03382 1.20538 0.91733 0.89846 0.92339 0.93524 1.22310 0.97899 1.00426 1.00959 1.42635 1.68049 1.16764 1.09759 1.19552 1.27037 0.93684 0.94994 0.91007 1.25432 1.03464 1.02261 0.96052 1.69815 1.50353 1.38693 1.03396 0.85258 0.77002 0.80850 0.77908 1.18743 1.22091 1.23100 1.21027 0.94772 0.97465 0.96895 1.21354 0.94341 0.98696 1.09209 0.88336 0.91984 0.91181 0.91029 0.92473 0.83921 0.83178 0.84262 0.86436 0.74947 0.91746 0.89755 0.94512 0.91074 0.87386 0.94157 0.95179 0.90370 0.80022 0.94535 0.86026 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.85 5.46 71.98 0.39 1.24 16 3 O -0.33 -8.53 10.14 -92.46 -0.94 -9.46 16 4 C 0.11 3.12 6.69 22.51 0.15 3.27 16 5 C -0.16 -4.19 9.99 22.37 0.22 -3.97 16 6 C -0.07 -1.70 9.69 22.26 0.22 -1.48 16 7 C -0.11 -2.96 4.37 -19.85 -0.09 -3.04 16 8 C -0.09 -1.90 5.83 29.10 0.17 -1.73 16 9 C 0.51 15.85 7.79 87.66 0.68 16.53 16 10 O -0.59 -25.71 15.70 -3.05 -0.05 -25.75 16 11 N -0.71 -18.67 4.45 -442.53 -1.97 -20.63 16 12 C 0.15 4.64 2.52 44.99 0.11 4.76 16 13 H 0.04 1.85 7.05 -2.39 -0.02 1.84 16 14 C -0.15 -3.95 9.48 71.98 0.68 -3.27 16 15 C -0.12 -3.25 4.29 30.59 0.13 -3.12 16 16 C 0.16 5.84 2.84 44.99 0.13 5.97 16 17 H 0.05 1.66 7.56 -2.39 -0.02 1.65 16 18 C -0.16 -4.99 9.49 71.98 0.68 -4.30 16 19 N -0.73 -36.30 4.49 -322.94 -1.45 -37.75 16 20 C -0.22 -12.32 9.93 84.03 0.83 -11.49 16 21 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 22 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 23 N -0.97 -62.00 13.06 21.65 0.28 -61.72 16 24 Si 0.96 48.10 29.55 68.60 2.03 50.13 16 25 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 27 H -0.30 -15.57 7.11 99.48 0.71 -14.87 16 28 C -0.08 -2.45 9.69 22.25 0.22 -2.23 16 29 C -0.22 -6.13 9.04 22.36 0.20 -5.93 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 1.21 7.66 -2.39 -0.02 1.20 16 34 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 35 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.14 1.80 8.08 -2.39 -0.02 1.78 16 38 H 0.12 2.13 8.08 -2.39 -0.02 2.12 16 39 H 0.41 7.38 8.60 -92.70 -0.80 6.58 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 49 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 50 H 0.12 3.50 8.06 -2.91 -0.02 3.47 16 51 H 0.14 3.33 6.30 -2.91 -0.02 3.32 16 Total: -1.00 -81.01 420.27 3.25 -77.76 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.61 Total: 41.85 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.95 Total: -14.43 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -3.14 Total: -120.10 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.99 Total: -35.22 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -81.01 3.25 -77.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136092759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.207 kcal (2) G-P(sol) polarization free energy of solvation -81.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds