Wall clock time and date at job start Tue Mar 31 2020 18:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47036 * 2 1 4 4 C 1.46901 * 110.99874 * 199.93923 * 3 2 1 5 5 C 1.52999 * 109.47474 * 66.04564 * 4 3 2 6 6 N 1.46895 * 109.47180 * 180.02562 * 5 4 3 7 7 C 1.47017 * 110.99936 * 293.63166 * 6 5 4 8 8 C 1.53098 * 109.25608 * 177.60952 * 7 6 5 9 9 O 1.43016 * 109.25944 * 56.85080 * 8 7 6 10 10 C 1.43017 * 113.73874 * 301.32546 * 9 8 7 11 11 C 1.47019 * 110.99838 * 169.99784 * 6 5 4 12 12 C 1.46898 * 111.00533 * 75.98498 * 3 2 1 13 13 C 1.50696 * 109.47459 * 196.16124 * 12 3 2 14 14 C 1.38291 * 119.93125 * 264.09774 * 13 12 3 15 15 C 1.38109 * 120.07107 * 179.72482 * 14 13 12 16 16 C 1.38874 * 119.92370 * 0.57217 * 15 14 13 17 17 O 1.35751 * 120.06841 * 179.68132 * 16 15 14 18 18 C 1.34828 * 117.00372 * 185.17981 * 17 16 15 19 19 H 1.07998 * 120.00017 * 5.25845 * 18 17 16 20 20 C 1.38661 * 119.99903 * 185.25634 * 18 17 16 21 21 N 1.31550 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99583 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47432 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47287 * 120.00262 * 22 20 18 25 25 H 1.48500 * 109.46822 * 239.99918 * 22 20 18 26 26 C 1.38877 * 119.86892 * 359.70208 * 16 15 14 27 27 C 1.38105 * 119.92959 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47261 * 301.80661 * 1 2 3 29 29 H 1.08997 * 109.47152 * 61.80788 * 1 2 3 30 30 H 1.09004 * 109.46984 * 181.81315 * 1 2 3 31 31 H 1.09000 * 109.47174 * 239.99727 * 2 1 3 32 32 H 1.09001 * 109.47283 * 119.99758 * 2 1 3 33 33 H 1.09001 * 109.47094 * 186.04416 * 4 3 2 34 34 H 1.09003 * 109.47224 * 306.04068 * 4 3 2 35 35 H 1.09001 * 109.46839 * 300.00008 * 5 4 3 36 36 H 1.09003 * 109.47300 * 59.99550 * 5 4 3 37 37 H 1.09002 * 109.50467 * 297.54148 * 7 6 5 38 38 H 1.08995 * 109.50600 * 57.67606 * 7 6 5 39 39 H 1.09000 * 109.50718 * 296.91372 * 8 7 6 40 40 H 1.09000 * 109.54216 * 176.80776 * 8 7 6 41 41 H 1.09005 * 109.51026 * 298.73990 * 10 9 8 42 42 H 1.09001 * 109.54289 * 178.62606 * 10 9 8 43 43 H 1.08994 * 109.50761 * 302.32973 * 11 6 5 44 44 H 1.08998 * 109.50617 * 62.41392 * 11 6 5 45 45 H 1.09008 * 109.46843 * 316.16486 * 12 3 2 46 46 H 1.09001 * 109.47034 * 76.15628 * 12 3 2 47 47 H 1.08002 * 119.96519 * 359.97438 * 14 13 12 48 48 H 1.07999 * 120.03799 * 180.27662 * 15 14 13 49 49 H 0.97000 * 119.99603 * 180.02562 * 21 20 18 50 50 H 1.07995 * 120.04122 * 179.97438 * 26 16 15 51 51 H 1.07997 * 119.96912 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4106 1.4515 -0.4677 5 6 3.4735 1.0433 -1.9409 6 7 4.8645 1.1093 -2.4083 7 6 5.3527 2.4960 -2.4155 8 6 6.8204 2.5124 -2.8507 9 8 6.9392 1.8900 -4.1329 10 6 6.4735 0.5381 -4.1619 11 6 5.0022 0.5016 -3.7399 12 6 1.8820 1.9921 1.3305 13 6 2.0095 3.4892 1.2152 14 6 3.2298 4.0976 1.4461 15 6 3.3512 5.4689 1.3356 16 6 2.2435 6.2381 1.0040 17 8 2.3581 7.5868 0.9010 18 6 1.2241 8.2826 0.6822 19 1 0.2708 7.7751 0.6814 20 6 1.2819 9.6498 0.4582 21 7 2.4431 10.2680 0.4597 22 14 -0.2893 10.6138 0.1557 23 1 -1.4527 9.6924 0.2052 24 1 -0.4388 11.6574 1.2016 25 1 -0.2251 11.2580 -1.1807 26 6 1.0181 5.6247 0.7784 27 6 0.9044 4.2525 0.8848 28 1 -0.3634 0.5416 0.8734 29 1 -0.3633 0.4855 -0.9057 30 1 -0.3633 -1.0272 0.0325 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7829 2.4700 -0.3568 34 1 4.0257 0.7735 0.1239 35 1 3.1013 0.0248 -2.0518 36 1 2.8584 1.7214 -2.5325 37 1 4.7595 3.0871 -3.1133 38 1 5.2653 2.9178 -1.4142 39 1 7.4217 1.9663 -2.1239 40 1 7.1709 3.5427 -2.9124 41 1 7.0647 -0.0655 -3.4732 42 1 6.5725 0.1400 -5.1718 43 1 4.6589 -0.5322 -3.7055 44 1 4.4029 1.0604 -4.4587 45 1 0.9055 1.7414 1.7451 46 1 2.6641 1.6103 1.9868 47 1 4.0897 3.4994 1.7090 48 1 4.3055 5.9431 1.5117 49 1 2.4834 11.2245 0.3034 50 1 0.1548 6.2202 0.5207 51 1 -0.0483 3.7749 0.7099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137120638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:30 Heat of formation + Delta-G solvation = -33.485649 kcal Electronic energy + Delta-G solvation = -29228.068870 eV Core-core repulsion = 25321.422094 eV Total energy + Delta-G solvation = -3906.646775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.81874 -39.17217 -38.06844 -36.37302 -35.60079 -32.36245 -31.55977 -31.19534 -30.67948 -30.11513 -28.39573 -26.31359 -25.34760 -24.35507 -23.97972 -22.58271 -21.94231 -20.92934 -20.45259 -20.01155 -17.97206 -17.02513 -16.81726 -16.34129 -15.82755 -15.62838 -15.29075 -15.23472 -14.79625 -14.57891 -14.49902 -14.31508 -14.04877 -13.91424 -13.57439 -13.36882 -13.12367 -12.89941 -12.67656 -12.53480 -12.24861 -12.03612 -11.91060 -11.78590 -11.64522 -11.56088 -11.38350 -11.27645 -10.97890 -10.84519 -10.73179 -10.66995 -10.49956 -10.42967 -10.34958 -9.84153 -9.33884 -8.82881 -8.58429 -8.25697 -8.13641 -7.16357 -6.45063 -4.03469 2.22596 2.30480 3.12021 3.13929 3.19409 3.43757 3.70358 3.96893 4.12821 4.62456 4.65199 4.73684 4.82474 4.94974 4.96138 5.05201 5.10832 5.13148 5.17282 5.21536 5.25865 5.34701 5.38895 5.40365 5.43173 5.52970 5.56563 5.58304 5.66094 5.72912 5.76135 5.78163 5.84384 5.87574 5.93068 5.95260 6.01511 6.17742 6.23909 6.43705 6.71307 6.72590 6.77282 6.92367 6.95505 7.05310 7.12118 7.18061 7.30041 7.44158 7.46376 7.84557 8.00414 9.01045 9.71615 10.73148 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.002980 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.841826 B = 9395.116958 C =11251.727899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.058 3.942 5 C 0.060 3.940 6 N -0.538 5.538 7 C 0.014 3.986 8 C 0.064 3.936 9 O -0.387 6.387 10 C 0.065 3.935 11 C 0.018 3.982 12 C 0.114 3.886 13 C -0.177 4.177 14 C -0.070 4.070 15 C -0.194 4.194 16 C 0.155 3.845 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.235 4.235 27 C -0.048 4.048 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -21.358 -4.401 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.258 5.258 4 C -0.070 4.070 5 C -0.068 4.068 6 N -0.263 5.263 7 C -0.114 4.114 8 C -0.013 4.013 9 O -0.305 6.305 10 C -0.013 4.013 11 C -0.110 4.110 12 C -0.013 4.013 13 C -0.178 4.178 14 C -0.089 4.089 15 C -0.213 4.213 16 C 0.102 3.898 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.254 4.254 27 C -0.067 4.067 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.124 0.876 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.896 -20.872 -4.574 21.563 hybrid contribution -1.047 0.380 0.046 1.115 sum 1.849 -20.492 -4.528 21.068 Atomic orbital electron populations 1.21769 0.95045 1.00851 1.02715 1.22140 0.96169 0.89435 1.00438 1.61987 1.20237 1.16891 1.26681 1.22047 0.88621 1.02225 0.94090 1.22110 0.87489 1.01172 0.96048 1.62179 1.21364 1.18088 1.24701 1.22865 0.96522 0.89221 1.02833 1.22699 0.94983 0.98682 0.84926 1.87990 1.84234 1.26568 1.31744 1.22635 0.92885 0.84002 1.01739 1.22759 0.97905 1.00394 0.89942 1.20815 1.00571 0.91809 0.88085 1.19066 0.94252 0.93431 1.11092 1.20475 0.96024 0.93463 0.98919 1.20147 0.97743 0.92973 1.10476 1.19394 0.93118 0.85016 0.92316 1.83986 1.34500 1.12252 1.77487 1.21362 0.84632 0.90190 1.50460 0.89073 1.25283 0.98756 0.95917 0.96579 1.70044 1.24003 1.10144 1.45578 0.85662 0.80044 0.79486 0.78339 1.19095 1.20147 1.20149 1.21168 0.98523 0.94890 1.10836 1.20533 0.97136 0.92848 0.96159 0.92579 0.91998 0.92826 0.91096 0.95066 0.89666 0.94567 0.90944 0.93633 0.93518 0.88920 0.92320 0.88191 0.92401 0.88650 0.89869 0.93878 0.90747 0.94901 0.87617 0.86710 0.92091 0.85698 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.05 37.16 0.37 -1.00 16 2 C 0.05 0.46 5.56 -3.83 -0.02 0.44 16 3 N -0.53 -6.62 4.38 -236.07 -1.03 -7.65 16 4 C 0.06 0.71 4.73 -3.82 -0.02 0.69 16 5 C 0.06 0.67 4.93 -3.83 -0.02 0.65 16 6 N -0.54 -5.89 4.73 -234.31 -1.11 -6.99 16 7 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 8 C 0.06 0.69 7.01 37.21 0.26 0.95 16 9 O -0.39 -4.56 10.83 -35.23 -0.38 -4.94 16 10 C 0.06 0.59 7.01 37.21 0.26 0.85 16 11 C 0.02 0.17 5.65 -3.71 -0.02 0.15 16 12 C 0.11 1.52 4.93 -4.98 -0.02 1.49 16 13 C -0.18 -2.95 4.93 -104.58 -0.52 -3.46 16 14 C -0.07 -1.21 8.28 -39.61 -0.33 -1.54 16 15 C -0.19 -4.03 9.99 -39.39 -0.39 -4.43 16 16 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 17 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 18 C -0.39 -10.91 9.45 30.89 0.29 -10.62 16 19 H 0.09 2.38 5.28 -52.49 -0.28 2.10 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 22 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 26 C -0.23 -5.10 9.14 -39.39 -0.36 -5.46 16 27 C -0.05 -0.88 9.72 -39.60 -0.38 -1.26 16 28 H 0.06 0.55 6.72 -51.93 -0.35 0.20 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.66 5.88 -51.93 -0.31 0.35 16 32 H 0.03 0.30 8.00 -51.93 -0.42 -0.11 16 33 H 0.09 1.19 4.55 -51.93 -0.24 0.95 16 34 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.07 0.73 6.14 -51.93 -0.32 0.41 16 36 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.11 6.38 -51.93 -0.33 0.78 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.93 6.50 -51.92 -0.34 0.60 16 46 H 0.03 0.42 7.95 -51.93 -0.41 0.01 16 47 H 0.11 1.56 8.04 -52.49 -0.42 1.14 16 48 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 49 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.13 2.75 5.70 -52.49 -0.30 2.45 16 51 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -30.70 398.21 -10.39 -41.09 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.33 Total: 4.57 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.28 Total: -17.97 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -1.38 Total: -39.20 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.38 Total: -10.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.70 -10.39 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.602 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds