Wall clock time and date at job start Tue Mar 31 2020 18:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47036 * 2 1 4 4 C 1.46901 * 110.99874 * 199.93923 * 3 2 1 5 5 C 1.52999 * 109.47474 * 66.04564 * 4 3 2 6 6 N 1.46895 * 109.47180 * 180.02562 * 5 4 3 7 7 C 1.47017 * 110.99936 * 293.63166 * 6 5 4 8 8 C 1.53098 * 109.25608 * 177.60952 * 7 6 5 9 9 O 1.43016 * 109.25944 * 56.85080 * 8 7 6 10 10 C 1.43017 * 113.73874 * 301.32546 * 9 8 7 11 11 C 1.47019 * 110.99838 * 169.99784 * 6 5 4 12 12 C 1.46898 * 111.00533 * 75.98498 * 3 2 1 13 13 C 1.50696 * 109.47459 * 196.16124 * 12 3 2 14 14 C 1.38291 * 119.93125 * 264.09774 * 13 12 3 15 15 C 1.38109 * 120.07107 * 179.72482 * 14 13 12 16 16 C 1.38874 * 119.92370 * 0.57217 * 15 14 13 17 17 O 1.35751 * 120.06841 * 179.68132 * 16 15 14 18 18 C 1.34828 * 117.00372 * 185.17981 * 17 16 15 19 19 H 1.07998 * 120.00017 * 5.25845 * 18 17 16 20 20 C 1.38661 * 119.99903 * 185.25634 * 18 17 16 21 21 N 1.31550 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99583 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47432 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47287 * 120.00262 * 22 20 18 25 25 H 1.48500 * 109.46822 * 239.99918 * 22 20 18 26 26 C 1.38877 * 119.86892 * 359.70208 * 16 15 14 27 27 C 1.38105 * 119.92959 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47261 * 301.80661 * 1 2 3 29 29 H 1.08997 * 109.47152 * 61.80788 * 1 2 3 30 30 H 1.09004 * 109.46984 * 181.81315 * 1 2 3 31 31 H 1.09000 * 109.47174 * 239.99727 * 2 1 3 32 32 H 1.09001 * 109.47283 * 119.99758 * 2 1 3 33 33 H 1.09001 * 109.47094 * 186.04416 * 4 3 2 34 34 H 1.09003 * 109.47224 * 306.04068 * 4 3 2 35 35 H 1.09001 * 109.46839 * 300.00008 * 5 4 3 36 36 H 1.09003 * 109.47300 * 59.99550 * 5 4 3 37 37 H 1.09002 * 109.50467 * 297.54148 * 7 6 5 38 38 H 1.08995 * 109.50600 * 57.67606 * 7 6 5 39 39 H 1.09000 * 109.50718 * 296.91372 * 8 7 6 40 40 H 1.09000 * 109.54216 * 176.80776 * 8 7 6 41 41 H 1.09005 * 109.51026 * 298.73990 * 10 9 8 42 42 H 1.09001 * 109.54289 * 178.62606 * 10 9 8 43 43 H 1.08994 * 109.50761 * 302.32973 * 11 6 5 44 44 H 1.08998 * 109.50617 * 62.41392 * 11 6 5 45 45 H 1.09008 * 109.46843 * 316.16486 * 12 3 2 46 46 H 1.09001 * 109.47034 * 76.15628 * 12 3 2 47 47 H 1.08002 * 119.96519 * 359.97438 * 14 13 12 48 48 H 1.07999 * 120.03799 * 180.27662 * 15 14 13 49 49 H 0.97000 * 119.99603 * 180.02562 * 21 20 18 50 50 H 1.07995 * 120.04122 * 179.97438 * 26 16 15 51 51 H 1.07997 * 119.96912 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4106 1.4515 -0.4677 5 6 3.4735 1.0433 -1.9409 6 7 4.8645 1.1093 -2.4083 7 6 5.3527 2.4960 -2.4155 8 6 6.8204 2.5124 -2.8507 9 8 6.9392 1.8900 -4.1329 10 6 6.4735 0.5381 -4.1619 11 6 5.0022 0.5016 -3.7399 12 6 1.8820 1.9921 1.3305 13 6 2.0095 3.4892 1.2152 14 6 3.2298 4.0976 1.4461 15 6 3.3512 5.4689 1.3356 16 6 2.2435 6.2381 1.0040 17 8 2.3581 7.5868 0.9010 18 6 1.2241 8.2826 0.6822 19 1 0.2708 7.7751 0.6814 20 6 1.2819 9.6498 0.4582 21 7 2.4431 10.2680 0.4597 22 14 -0.2893 10.6138 0.1557 23 1 -1.4527 9.6924 0.2052 24 1 -0.4388 11.6574 1.2016 25 1 -0.2251 11.2580 -1.1807 26 6 1.0181 5.6247 0.7784 27 6 0.9044 4.2525 0.8848 28 1 -0.3634 0.5416 0.8734 29 1 -0.3633 0.4855 -0.9057 30 1 -0.3633 -1.0272 0.0325 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7829 2.4700 -0.3568 34 1 4.0257 0.7735 0.1239 35 1 3.1013 0.0248 -2.0518 36 1 2.8584 1.7214 -2.5325 37 1 4.7595 3.0871 -3.1133 38 1 5.2653 2.9178 -1.4142 39 1 7.4217 1.9663 -2.1239 40 1 7.1709 3.5427 -2.9124 41 1 7.0647 -0.0655 -3.4732 42 1 6.5725 0.1400 -5.1718 43 1 4.6589 -0.5322 -3.7055 44 1 4.4029 1.0604 -4.4587 45 1 0.9055 1.7414 1.7451 46 1 2.6641 1.6103 1.9868 47 1 4.0897 3.4994 1.7090 48 1 4.3055 5.9431 1.5117 49 1 2.4834 11.2245 0.3034 50 1 0.1548 6.2202 0.5207 51 1 -0.0483 3.7749 0.7099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137120638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:28 Heat of formation + Delta-G solvation = -54.315572 kcal Electronic energy + Delta-G solvation = -29228.972123 eV Core-core repulsion = 25321.422094 eV Total energy + Delta-G solvation = -3907.550028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.91115 -40.56236 -39.31716 -37.84042 -36.57027 -34.32790 -32.41785 -32.21948 -31.90764 -31.61102 -29.52020 -27.70159 -26.90537 -25.38088 -24.95948 -23.69846 -23.32035 -22.26008 -21.38726 -21.09351 -19.83348 -18.82472 -17.77526 -17.18981 -16.86372 -16.53928 -16.50920 -16.19900 -16.17403 -16.01381 -15.73534 -15.45010 -15.34369 -15.21998 -15.00407 -14.70658 -14.34117 -14.22429 -14.07253 -13.59782 -13.37849 -13.32418 -13.00916 -12.92212 -12.77638 -12.64285 -12.43913 -12.36383 -12.30328 -12.20701 -12.11874 -12.03799 -11.74216 -11.54284 -11.30332 -11.17800 -10.79409 -10.68339 -9.74976 -9.48989 -9.20739 -8.87753 -8.47567 -6.15086 0.61596 0.70191 1.34122 1.42226 1.52286 2.17095 2.52939 2.81549 2.93200 3.11535 3.39325 3.52223 3.78146 3.91269 3.99362 4.03295 4.06520 4.16050 4.18181 4.20222 4.23600 4.30563 4.37671 4.48337 4.53835 4.54254 4.57552 4.62511 4.67804 4.72055 4.76765 4.80704 4.81182 4.88244 4.92524 4.99565 5.03747 5.08113 5.09778 5.15296 5.16623 5.32086 5.44702 5.59010 5.73433 5.80426 5.85624 5.92965 6.03319 6.15724 6.16746 6.24824 6.31398 6.97677 7.79314 8.76052 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.002980 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.841826 B = 9395.116958 C =11251.727899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.546 5.546 4 C 0.063 3.937 5 C 0.067 3.933 6 N -0.536 5.536 7 C 0.016 3.984 8 C 0.066 3.934 9 O -0.408 6.408 10 C 0.061 3.939 11 C 0.018 3.982 12 C 0.116 3.884 13 C -0.150 4.150 14 C -0.060 4.060 15 C -0.203 4.203 16 C 0.114 3.886 17 O -0.234 6.234 18 C -0.411 4.411 19 H 0.099 0.901 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.017 2.983 23 H -0.252 1.252 24 H -0.267 1.267 25 H -0.269 1.269 26 C -0.244 4.244 27 C -0.048 4.048 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.031 0.969 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.141 0.859 48 H 0.111 0.889 49 H 0.272 0.728 50 H 0.114 0.886 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -25.252 -4.305 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 N -0.271 5.271 4 C -0.065 4.065 5 C -0.061 4.061 6 N -0.262 5.262 7 C -0.112 4.112 8 C -0.011 4.011 9 O -0.327 6.327 10 C -0.016 4.016 11 C -0.110 4.110 12 C -0.011 4.011 13 C -0.151 4.151 14 C -0.078 4.078 15 C -0.222 4.222 16 C 0.064 3.936 17 O -0.140 6.140 18 C -0.487 4.487 19 H 0.116 0.884 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.836 3.164 23 H -0.176 1.176 24 H -0.192 1.192 25 H -0.194 1.194 26 C -0.263 4.263 27 C -0.067 4.067 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.124 0.876 44 H 0.049 0.951 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.159 0.841 48 H 0.130 0.870 49 H 0.081 0.919 50 H 0.132 0.868 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.920 -24.843 -4.473 25.316 hybrid contribution -0.677 1.176 0.033 1.358 sum 1.244 -23.667 -4.440 24.112 Atomic orbital electron populations 1.21758 0.94542 1.01928 1.01931 1.22202 0.96477 0.87812 1.01453 1.61901 1.20426 1.18844 1.25912 1.21967 0.88645 1.01139 0.94745 1.22038 0.87354 1.01542 0.95154 1.62237 1.21018 1.17251 1.25669 1.22802 0.97026 0.89591 1.01815 1.22708 0.94292 0.99138 0.84976 1.87964 1.84494 1.28059 1.32175 1.22843 0.92526 0.82899 1.03287 1.22856 0.98175 1.01259 0.88741 1.20816 1.02210 0.88855 0.89170 1.19583 0.93050 0.95764 1.06682 1.20834 0.97672 0.92044 0.97253 1.20397 0.96930 0.94443 1.10473 1.19923 0.95155 0.84193 0.94327 1.83944 1.35141 1.14397 1.80547 1.21814 0.85145 0.90989 1.50760 0.88351 1.26562 1.02699 0.96695 0.96082 1.70185 1.26775 1.10612 1.48321 0.84551 0.75531 0.77815 0.78460 1.17550 1.19232 1.19378 1.21242 0.97375 0.96466 1.11239 1.20839 0.99056 0.91414 0.95389 0.92971 0.93098 0.90933 0.90113 0.93925 0.91835 0.93621 0.89103 0.95902 0.95808 0.89539 0.91289 0.87991 0.91506 0.86622 0.87554 0.95108 0.89154 0.93247 0.84135 0.87046 0.91871 0.86803 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.05 71.98 0.72 -1.44 16 2 C 0.05 0.76 5.56 86.30 0.48 1.24 16 3 N -0.55 -11.64 4.38 -900.80 -3.94 -15.58 16 4 C 0.06 1.36 4.73 86.30 0.41 1.77 16 5 C 0.07 1.36 4.93 86.30 0.43 1.78 16 6 N -0.54 -10.81 4.73 -895.21 -4.23 -15.04 16 7 C 0.02 0.37 5.44 86.31 0.47 0.84 16 8 C 0.07 1.37 7.01 72.01 0.50 1.87 16 9 O -0.41 -9.22 10.83 -148.98 -1.61 -10.83 16 10 C 0.06 0.98 7.01 72.02 0.50 1.49 16 11 C 0.02 0.30 5.65 86.32 0.49 0.79 16 12 C 0.12 2.63 4.93 85.56 0.42 3.05 16 13 C -0.15 -4.61 4.93 -19.84 -0.10 -4.70 16 14 C -0.06 -1.97 8.28 22.25 0.18 -1.78 16 15 C -0.20 -8.65 9.99 22.39 0.22 -8.42 16 16 C 0.11 5.76 6.65 22.58 0.15 5.91 16 17 O -0.23 -14.26 9.76 -22.74 -0.22 -14.48 16 18 C -0.41 -24.31 9.45 67.92 0.64 -23.66 16 19 H 0.10 5.39 5.28 -2.91 -0.02 5.38 16 20 C -0.02 -1.33 5.49 84.84 0.47 -0.86 16 21 N -0.92 -57.12 13.67 21.61 0.30 -56.83 16 22 Si 1.02 43.52 29.55 68.60 2.03 45.55 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 C -0.24 -10.84 9.14 22.39 0.20 -10.64 16 27 C -0.05 -1.70 9.72 22.26 0.22 -1.49 16 28 H 0.05 0.83 6.72 -2.39 -0.02 0.81 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.08 1.15 5.88 -2.39 -0.01 1.14 16 32 H 0.04 0.62 8.00 -2.39 -0.02 0.60 16 33 H 0.06 1.65 4.55 -2.39 -0.01 1.64 16 34 H 0.05 0.92 8.12 -2.39 -0.02 0.90 16 35 H 0.09 1.51 6.14 -2.39 -0.01 1.50 16 36 H 0.02 0.57 8.12 -2.39 -0.02 0.55 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 2.07 6.38 -2.39 -0.02 2.06 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.11 1.30 8.09 -2.39 -0.02 1.28 16 44 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 1.84 6.50 -2.38 -0.02 1.82 16 46 H 0.05 1.01 7.95 -2.39 -0.02 0.99 16 47 H 0.14 3.69 8.04 -2.91 -0.02 3.67 16 48 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 49 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 50 H 0.11 5.22 5.70 -2.91 -0.02 5.20 16 51 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -71.79 398.21 -0.36 -72.15 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.91 Total: 29.34 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 6.41 Total: -34.27 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -7.88 Total: -87.45 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.83 Total: -25.31 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.79 -0.36 -72.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.835 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds