Wall clock time and date at job start Tue Mar 31 2020 19:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46826 * 2 1 4 4 C 1.35903 * 116.99767 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05270 * 0.02562 * 4 3 2 6 6 C 1.38131 * 119.94042 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05564 * 359.73961 * 6 5 4 8 8 C 1.38247 * 120.11329 * 0.51697 * 7 6 5 9 9 C 1.50694 * 119.97367 * 179.76148 * 8 7 6 10 10 C 1.50697 * 109.47244 * 269.72336 * 9 8 7 11 11 O 1.21278 * 120.00283 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00002 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99713 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47271 * 35.00090 * 13 12 10 15 15 C 1.52993 * 109.47002 * 274.99674 * 13 12 10 16 16 C 1.52998 * 109.46555 * 155.00057 * 13 12 10 17 17 C 1.52998 * 109.47384 * 294.99651 * 16 13 12 18 18 H 1.09003 * 109.47082 * 305.00221 * 17 16 13 19 19 C 1.52995 * 109.47443 * 185.00170 * 17 16 13 20 20 N 1.46498 * 109.47009 * 65.00045 * 17 16 13 21 21 C 1.36935 * 120.00239 * 204.99963 * 20 17 16 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 17 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 C 1.38167 * 120.05086 * 359.48418 * 8 7 6 30 30 H 1.09003 * 109.47062 * 59.99884 * 1 2 3 31 31 H 1.08995 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46971 * 299.99935 * 1 2 3 33 33 H 1.08999 * 109.46971 * 240.00065 * 2 1 3 34 34 H 1.09000 * 109.46780 * 119.99674 * 2 1 3 35 35 H 1.08000 * 120.03151 * 359.97438 * 5 4 3 36 36 H 1.07997 * 119.97071 * 180.02562 * 6 5 4 37 37 H 1.08000 * 119.94295 * 180.27285 * 7 6 5 38 38 H 1.09000 * 109.47138 * 149.71939 * 9 8 7 39 39 H 1.09002 * 109.46790 * 29.72265 * 9 8 7 40 40 H 0.96995 * 119.99521 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.47405 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47749 * 300.00516 * 15 13 12 43 43 H 1.09001 * 109.47223 * 60.00644 * 15 13 12 44 44 H 1.08997 * 109.46877 * 175.00041 * 16 13 12 45 45 H 1.08999 * 109.47306 * 55.00192 * 16 13 12 46 46 H 1.08996 * 109.47329 * 300.00343 * 19 17 16 47 47 H 1.09003 * 109.46933 * 60.00266 * 19 17 16 48 48 H 1.09004 * 109.47411 * 179.97438 * 19 17 16 49 49 H 0.97004 * 119.99747 * 25.00702 * 20 17 16 50 50 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 51 51 H 1.08006 * 120.02275 * 180.23201 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0962 1.8878 -0.0049 8 6 5.2552 2.9851 0.0005 9 6 5.8332 4.3767 0.0000 10 6 6.0258 4.8412 1.4206 11 8 5.7231 4.1139 2.3427 12 7 6.5336 6.0653 1.6665 13 6 6.7203 6.5169 3.0475 14 1 7.0068 5.6702 3.6712 15 6 5.4127 7.1155 3.5695 16 6 7.8209 7.5788 3.0923 17 6 9.1551 6.9478 2.6890 18 1 9.3565 6.0860 3.3252 19 6 10.2760 7.9761 2.8533 20 7 9.0886 6.5173 1.2902 21 6 9.9008 5.5087 0.8449 22 1 10.5901 5.0303 1.5249 23 6 9.8382 5.1012 -0.4805 24 7 8.9943 5.6805 -1.3080 25 14 10.9455 3.7248 -1.0879 26 1 12.2193 4.2996 -1.5902 27 1 11.2310 2.7896 0.0297 28 1 10.2665 2.9912 -2.1860 29 6 3.8851 2.8066 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7886 -0.5728 0.0005 36 1 6.2280 -0.2460 0.0001 37 1 7.1669 2.0293 -0.0093 38 1 5.1507 5.0535 -0.5142 39 1 6.7945 4.3707 -0.5138 40 1 6.7754 6.6470 0.9289 41 1 5.5517 7.4520 4.5970 42 1 5.1261 7.9623 2.9459 43 1 4.6286 6.3590 3.5376 44 1 7.8991 7.9786 4.1033 45 1 7.5764 8.3850 2.4007 46 1 10.0746 8.8379 2.2172 47 1 10.3255 8.2963 3.8941 48 1 11.2266 7.5264 2.5664 49 1 8.4694 6.9468 0.6795 50 1 8.4189 6.3950 -0.9926 51 1 3.2284 3.6642 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146645416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:13 Heat of formation + Delta-G solvation = -49.076379 kcal Electronic energy + Delta-G solvation = -29820.180099 eV Core-core repulsion = 25912.857259 eV Total energy + Delta-G solvation = -3907.322840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.08750 -39.27980 -37.56602 -36.68143 -34.32149 -32.62436 -32.20912 -32.01146 -30.54193 -29.36988 -28.32548 -27.12221 -26.35877 -23.77455 -23.50686 -22.30018 -21.70932 -20.52386 -20.32847 -19.54495 -17.69784 -17.41140 -16.43758 -16.10685 -15.93235 -15.77496 -15.66802 -15.04392 -14.53377 -14.16301 -13.81408 -13.65717 -13.47304 -13.39535 -13.18454 -13.14416 -12.97868 -12.81607 -12.66778 -12.18854 -12.08897 -11.79269 -11.73302 -11.68405 -11.58309 -11.42333 -11.15139 -10.98326 -10.77307 -10.71391 -10.58199 -10.48656 -10.40323 -10.12072 -10.03270 -9.25549 -9.19501 -8.97637 -8.50879 -8.37567 -7.92059 -7.02473 -6.11920 -3.11212 1.58418 1.76141 3.22056 3.35500 3.50975 3.53333 3.67377 3.76672 4.16407 4.63794 4.75719 4.79169 4.99526 5.04592 5.07100 5.09769 5.30036 5.33537 5.34084 5.41429 5.53074 5.57723 5.59284 5.63197 5.64245 5.70989 5.76344 5.82180 5.83303 5.92649 5.95170 6.03379 6.08984 6.16059 6.17638 6.32289 6.37036 6.46277 6.46640 6.51887 6.54531 6.73076 6.79710 6.98847 6.99833 7.01806 7.15414 7.58821 7.80614 8.15969 8.70559 8.91223 9.18053 10.02869 10.19413 11.34551 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.003613 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.416755 B = 7747.855436 C = 9614.843677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.123 3.877 5 C -0.215 4.215 6 C -0.082 4.082 7 C -0.134 4.134 8 C -0.009 4.009 9 C -0.113 4.113 10 C 0.532 3.468 11 O -0.553 6.553 12 N -0.702 5.702 13 C 0.151 3.849 14 H 0.082 0.918 15 C -0.162 4.162 16 C -0.134 4.134 17 C 0.175 3.825 18 H 0.048 0.952 19 C -0.163 4.163 20 N -0.727 5.727 21 C -0.314 4.314 22 H 0.061 0.939 23 C -0.044 4.044 24 N -0.944 5.944 25 Si 1.072 2.928 26 H -0.298 1.298 27 H -0.296 1.296 28 H -0.287 1.287 29 C -0.140 4.140 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.399 0.601 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.036 0.964 48 H 0.052 0.948 49 H 0.361 0.639 50 H 0.250 0.750 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 -4.350 3.790 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.078 3.922 5 C -0.234 4.234 6 C -0.100 4.100 7 C -0.152 4.152 8 C -0.010 4.010 9 C -0.153 4.153 10 C 0.319 3.681 11 O -0.432 6.432 12 N -0.354 5.354 13 C 0.046 3.954 14 H 0.100 0.900 15 C -0.220 4.220 16 C -0.173 4.173 17 C 0.065 3.935 18 H 0.066 0.934 19 C -0.223 4.223 20 N -0.371 5.371 21 C -0.445 4.445 22 H 0.079 0.921 23 C -0.240 4.240 24 N -0.591 5.591 25 Si 0.903 3.097 26 H -0.226 1.226 27 H -0.223 1.223 28 H -0.213 1.213 29 C -0.159 4.159 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.112 0.888 39 H 0.149 0.851 40 H 0.235 0.765 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.195 0.805 50 H 0.061 0.939 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.942 -5.772 3.271 13.661 hybrid contribution -0.102 1.146 0.845 1.427 sum -12.044 -4.626 4.116 13.542 Atomic orbital electron populations 1.21768 0.93032 1.02591 1.03454 1.22711 0.95580 0.82485 1.01239 1.86037 1.19471 1.28766 1.89133 1.18824 0.81786 0.94080 0.97512 1.21100 0.94452 0.97472 1.10366 1.20862 0.94141 0.97166 0.97817 1.21057 1.00361 0.91852 1.01909 1.19138 0.91952 0.94518 0.95361 1.20812 1.05255 0.93520 0.95684 1.20214 0.76141 0.81072 0.90681 1.90640 1.51638 1.54531 1.46384 1.45948 1.64315 1.17008 1.08133 1.20766 0.93734 0.97021 0.83874 0.89991 1.22203 0.98393 1.00836 1.00592 1.22218 0.95768 0.97633 1.01671 1.20209 0.91089 0.94533 0.87635 0.93358 1.22406 1.01162 0.99997 0.98747 1.42471 1.46860 1.42603 1.05212 1.20044 1.16344 1.11715 0.96410 0.92074 1.25529 1.02360 1.04009 0.92148 1.70941 1.25154 1.26717 1.36252 0.83320 0.75359 0.75520 0.75452 1.22561 1.22324 1.21288 1.20177 0.94505 0.94598 1.06624 0.91596 0.90591 0.91583 0.92237 0.92240 0.86098 0.85993 0.85491 0.88806 0.85073 0.76482 0.92211 0.92888 0.92381 0.90810 0.91912 0.93749 0.94500 0.92836 0.80459 0.93880 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.56 5.46 37.16 0.20 0.77 16 3 O -0.32 -4.58 10.14 -19.44 -0.20 -4.78 16 4 C 0.12 1.95 6.69 -39.22 -0.26 1.68 16 5 C -0.22 -3.15 9.04 -39.43 -0.36 -3.50 16 6 C -0.08 -1.27 10.04 -39.60 -0.40 -1.67 16 7 C -0.13 -2.41 9.70 -39.56 -0.38 -2.80 16 8 C -0.01 -0.17 4.37 -104.65 -0.46 -0.62 16 9 C -0.11 -2.07 5.83 -29.04 -0.17 -2.24 16 10 C 0.53 10.47 7.79 -10.98 -0.09 10.39 16 11 O -0.55 -12.43 15.70 5.56 0.09 -12.34 16 12 N -0.70 -12.41 3.80 -53.81 -0.20 -12.62 16 13 C 0.15 2.45 2.57 -67.93 -0.17 2.27 16 14 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 15 C -0.16 -2.22 9.48 37.15 0.35 -1.87 16 16 C -0.13 -2.02 4.43 -26.73 -0.12 -2.13 16 17 C 0.17 3.26 2.89 -67.93 -0.20 3.06 16 18 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 19 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 20 N -0.73 -16.06 3.84 -53.43 -0.21 -16.27 16 21 C -0.31 -8.09 9.93 -15.06 -0.15 -8.24 16 22 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 23 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 24 N -0.94 -25.52 13.40 55.49 0.74 -24.78 16 25 Si 1.07 24.87 29.92 -169.99 -5.09 19.78 16 26 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 C -0.14 -2.39 9.64 -39.43 -0.38 -2.77 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.12 1.42 6.30 -52.49 -0.33 1.08 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 39 H 0.13 2.74 7.79 -51.93 -0.40 2.34 16 40 H 0.40 6.96 6.51 -40.82 -0.27 6.69 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.36 7.95 4.54 -40.82 -0.19 7.76 16 50 H 0.25 6.52 6.77 -40.82 -0.28 6.25 16 51 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 413.78 15.07 6.24 6.24 Total: -1.00 -30.49 413.78 -9.18 -39.67 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -8.62 Total: 17.27 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.94 Total: -12.18 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.33 Total: -53.66 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.11 Total: -17.12 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -30.49 -9.18 -39.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146645416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.407 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds