Wall clock time and date at job start Tue Mar 31 2020 19:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46826 * 2 1 4 4 C 1.35903 * 116.99767 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05270 * 0.02562 * 4 3 2 6 6 C 1.38131 * 119.94042 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05564 * 359.73961 * 6 5 4 8 8 C 1.38247 * 120.11329 * 0.51697 * 7 6 5 9 9 C 1.50694 * 119.97367 * 179.76148 * 8 7 6 10 10 C 1.50697 * 109.47244 * 269.72336 * 9 8 7 11 11 O 1.21278 * 120.00283 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00002 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99713 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47271 * 35.00090 * 13 12 10 15 15 C 1.52993 * 109.47002 * 274.99674 * 13 12 10 16 16 C 1.52998 * 109.46555 * 155.00057 * 13 12 10 17 17 C 1.52998 * 109.47384 * 294.99651 * 16 13 12 18 18 H 1.09003 * 109.47082 * 305.00221 * 17 16 13 19 19 C 1.52995 * 109.47443 * 185.00170 * 17 16 13 20 20 N 1.46498 * 109.47009 * 65.00045 * 17 16 13 21 21 C 1.36935 * 120.00239 * 204.99963 * 20 17 16 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 17 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 C 1.38167 * 120.05086 * 359.48418 * 8 7 6 30 30 H 1.09003 * 109.47062 * 59.99884 * 1 2 3 31 31 H 1.08995 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46971 * 299.99935 * 1 2 3 33 33 H 1.08999 * 109.46971 * 240.00065 * 2 1 3 34 34 H 1.09000 * 109.46780 * 119.99674 * 2 1 3 35 35 H 1.08000 * 120.03151 * 359.97438 * 5 4 3 36 36 H 1.07997 * 119.97071 * 180.02562 * 6 5 4 37 37 H 1.08000 * 119.94295 * 180.27285 * 7 6 5 38 38 H 1.09000 * 109.47138 * 149.71939 * 9 8 7 39 39 H 1.09002 * 109.46790 * 29.72265 * 9 8 7 40 40 H 0.96995 * 119.99521 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.47405 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47749 * 300.00516 * 15 13 12 43 43 H 1.09001 * 109.47223 * 60.00644 * 15 13 12 44 44 H 1.08997 * 109.46877 * 175.00041 * 16 13 12 45 45 H 1.08999 * 109.47306 * 55.00192 * 16 13 12 46 46 H 1.08996 * 109.47329 * 300.00343 * 19 17 16 47 47 H 1.09003 * 109.46933 * 60.00266 * 19 17 16 48 48 H 1.09004 * 109.47411 * 179.97438 * 19 17 16 49 49 H 0.97004 * 119.99747 * 25.00702 * 20 17 16 50 50 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 51 51 H 1.08006 * 120.02275 * 180.23201 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0962 1.8878 -0.0049 8 6 5.2552 2.9851 0.0005 9 6 5.8332 4.3767 0.0000 10 6 6.0258 4.8412 1.4206 11 8 5.7231 4.1139 2.3427 12 7 6.5336 6.0653 1.6665 13 6 6.7203 6.5169 3.0475 14 1 7.0068 5.6702 3.6712 15 6 5.4127 7.1155 3.5695 16 6 7.8209 7.5788 3.0923 17 6 9.1551 6.9478 2.6890 18 1 9.3565 6.0860 3.3252 19 6 10.2760 7.9761 2.8533 20 7 9.0886 6.5173 1.2902 21 6 9.9008 5.5087 0.8449 22 1 10.5901 5.0303 1.5249 23 6 9.8382 5.1012 -0.4805 24 7 8.9943 5.6805 -1.3080 25 14 10.9455 3.7248 -1.0879 26 1 12.2193 4.2996 -1.5902 27 1 11.2310 2.7896 0.0297 28 1 10.2665 2.9912 -2.1860 29 6 3.8851 2.8066 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7886 -0.5728 0.0005 36 1 6.2280 -0.2460 0.0001 37 1 7.1669 2.0293 -0.0093 38 1 5.1507 5.0535 -0.5142 39 1 6.7945 4.3707 -0.5138 40 1 6.7754 6.6470 0.9289 41 1 5.5517 7.4520 4.5970 42 1 5.1261 7.9623 2.9459 43 1 4.6286 6.3590 3.5376 44 1 7.8991 7.9786 4.1033 45 1 7.5764 8.3850 2.4007 46 1 10.0746 8.8379 2.2172 47 1 10.3255 8.2963 3.8941 48 1 11.2266 7.5264 2.5664 49 1 8.4694 6.9468 0.6795 50 1 8.4189 6.3950 -0.9926 51 1 3.2284 3.6642 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146645416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:12 Heat of formation + Delta-G solvation = -65.530499 kcal Electronic energy + Delta-G solvation = -29820.893603 eV Core-core repulsion = 25912.857259 eV Total energy + Delta-G solvation = -3908.036344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34786 -40.67015 -38.83413 -38.15506 -35.96554 -34.27400 -33.62005 -32.89555 -31.97971 -30.52771 -30.02824 -28.45789 -27.65260 -25.46192 -24.68425 -23.54148 -22.99109 -21.85884 -21.72616 -21.01612 -19.34354 -18.85188 -17.95395 -17.22649 -17.05395 -17.01743 -16.98209 -16.71913 -15.94463 -15.90727 -15.44228 -15.09277 -14.90886 -14.61588 -14.42515 -14.32820 -14.24488 -14.02165 -13.56255 -13.46185 -13.38541 -13.16478 -12.89377 -12.88131 -12.81407 -12.69486 -12.59531 -12.50506 -12.40357 -12.16890 -11.89371 -11.78801 -11.72449 -11.63596 -11.61891 -11.10490 -10.86434 -10.81970 -9.88736 -9.79854 -9.16032 -8.90172 -8.20349 -5.13383 0.31671 0.47761 1.59424 1.66142 1.78332 1.80669 2.21625 2.39464 2.73389 2.85400 3.52049 3.70002 3.71712 3.83867 3.86553 4.05683 4.06354 4.07979 4.14130 4.18193 4.26308 4.30911 4.36668 4.38006 4.48558 4.51184 4.61414 4.66347 4.75925 4.77252 4.79347 4.84828 4.88946 4.94272 5.00036 5.03869 5.07312 5.10890 5.18865 5.30456 5.31280 5.33910 5.44392 5.54084 5.67639 5.71972 5.74674 5.78136 6.47146 6.64725 6.68732 7.24560 7.39116 8.12373 8.25806 9.29697 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.003613 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.416755 B = 7747.855436 C = 9614.843677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 O -0.332 6.332 4 C 0.122 3.878 5 C -0.210 4.210 6 C -0.080 4.080 7 C -0.164 4.164 8 C -0.026 4.026 9 C -0.105 4.105 10 C 0.527 3.473 11 O -0.586 6.586 12 N -0.695 5.695 13 C 0.147 3.853 14 H 0.052 0.948 15 C -0.151 4.151 16 C -0.120 4.120 17 C 0.167 3.833 18 H 0.024 0.976 19 C -0.153 4.153 20 N -0.731 5.731 21 C -0.315 4.315 22 H 0.044 0.956 23 C -0.084 4.084 24 N -0.960 5.960 25 Si 1.105 2.895 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.291 1.291 29 C -0.156 4.156 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.400 0.600 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.069 0.931 48 H 0.027 0.973 49 H 0.361 0.639 50 H 0.248 0.752 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 -4.403 4.470 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.247 6.247 4 C 0.077 3.923 5 C -0.228 4.228 6 C -0.097 4.097 7 C -0.183 4.183 8 C -0.026 4.026 9 C -0.144 4.144 10 C 0.315 3.685 11 O -0.467 6.467 12 N -0.347 5.347 13 C 0.043 3.957 14 H 0.070 0.930 15 C -0.209 4.209 16 C -0.158 4.158 17 C 0.059 3.941 18 H 0.043 0.957 19 C -0.213 4.213 20 N -0.375 5.375 21 C -0.447 4.447 22 H 0.062 0.938 23 C -0.278 4.278 24 N -0.608 5.608 25 Si 0.935 3.065 26 H -0.219 1.219 27 H -0.217 1.217 28 H -0.217 1.217 29 C -0.175 4.175 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.237 0.763 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.196 0.804 50 H 0.059 0.941 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.269 -5.785 3.980 15.013 hybrid contribution 0.264 1.122 0.698 1.348 sum -13.005 -4.663 4.678 14.586 Atomic orbital electron populations 1.21806 0.91276 1.04270 1.03124 1.23107 0.97043 0.80732 1.02334 1.86041 1.18380 1.31535 1.88743 1.18946 0.82869 0.93958 0.96530 1.21444 0.93794 0.98780 1.08799 1.21163 0.95208 0.96827 0.96542 1.21086 0.99487 0.93406 1.04274 1.19178 0.92709 0.94252 0.96502 1.20700 1.04262 0.94696 0.94780 1.20458 0.75896 0.81326 0.90842 1.90607 1.53300 1.55501 1.47315 1.45994 1.63224 1.16400 1.09037 1.20900 0.95799 0.96502 0.82518 0.92997 1.22094 0.95910 1.00545 1.02330 1.22129 0.92708 0.97052 1.03908 1.20407 0.93942 0.94425 0.85321 0.95737 1.22257 0.98906 0.99183 1.00928 1.42500 1.46338 1.41994 1.06716 1.20103 1.16192 1.12268 0.96124 0.93752 1.26354 1.03258 1.05449 0.92702 1.70984 1.25872 1.27362 1.36574 0.82847 0.74448 0.74135 0.75112 1.21934 1.21653 1.21735 1.20267 0.94052 0.95779 1.07411 0.91778 0.87875 0.92084 0.90825 0.91325 0.82651 0.83370 0.87574 0.86757 0.87858 0.76291 0.89662 0.91167 0.94346 0.87391 0.90442 0.93307 0.91168 0.95387 0.80426 0.94077 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.04 0.76 5.46 71.98 0.39 1.15 16 3 O -0.33 -9.08 10.14 -92.46 -0.94 -10.02 16 4 C 0.12 3.79 6.69 22.51 0.15 3.94 16 5 C -0.21 -5.80 9.04 22.37 0.20 -5.59 16 6 C -0.08 -2.43 10.04 22.26 0.22 -2.21 16 7 C -0.16 -6.19 9.70 22.28 0.22 -5.97 16 8 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 9 C -0.10 -4.03 5.83 29.10 0.17 -3.87 16 10 C 0.53 21.59 7.79 87.65 0.68 22.27 16 11 O -0.59 -27.41 15.70 -3.02 -0.05 -27.46 16 12 N -0.70 -24.99 3.80 -442.55 -1.68 -26.67 16 13 C 0.15 4.69 2.57 44.99 0.12 4.80 16 14 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 15 C -0.15 -3.86 9.48 71.98 0.68 -3.17 16 16 C -0.12 -3.34 4.43 30.59 0.14 -3.20 16 17 C 0.17 6.15 2.89 44.99 0.13 6.28 16 18 H 0.02 1.02 8.08 -2.39 -0.02 1.00 16 19 C -0.15 -5.04 9.49 71.98 0.68 -4.36 16 20 N -0.73 -32.71 3.84 -322.95 -1.24 -33.95 16 21 C -0.31 -16.64 9.93 84.03 0.83 -15.80 16 22 H 0.04 2.46 7.83 -2.91 -0.02 2.43 16 23 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 24 N -0.96 -52.98 13.40 21.65 0.29 -52.69 16 25 Si 1.11 51.38 29.92 68.60 2.05 53.43 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 29 C -0.16 -5.42 9.64 22.37 0.22 -5.20 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 34 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 35 H 0.16 3.13 6.30 -2.91 -0.02 3.11 16 36 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 37 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.11 3.75 8.08 -2.39 -0.02 3.73 16 39 H 0.10 4.60 7.79 -2.39 -0.02 4.58 16 40 H 0.40 14.12 6.51 -92.71 -0.60 13.52 16 41 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.36 16.06 4.54 -92.71 -0.42 15.64 16 50 H 0.25 13.25 6.77 -92.71 -0.63 12.62 16 51 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -68.37 413.78 4.42 -63.95 By element: Atomic # 1 Polarization: 50.67 SS G_CDS: 0.03 Total: 50.70 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.95 Total: -17.28 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -2.63 Total: -113.32 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.98 Total: -37.48 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -68.37 4.42 -63.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146645416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.578 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds