Wall clock time and date at job start Tue Mar 31 2020 19:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46996 * 2 1 4 4 C 1.36938 * 120.00087 * 275.72683 * 3 2 1 5 5 H 1.08000 * 119.99611 * 33.27256 * 4 3 2 6 6 C 1.38805 * 120.00429 * 213.26812 * 4 3 2 7 7 N 1.31620 * 119.99843 * 17.27268 * 6 4 3 8 8 Si 1.86798 * 120.00363 * 197.27365 * 6 4 3 9 9 H 1.48501 * 109.47411 * 90.00230 * 8 6 4 10 10 H 1.48501 * 109.47152 * 210.00189 * 8 6 4 11 11 H 1.48496 * 109.47205 * 329.99831 * 8 6 4 12 12 C 1.46500 * 120.00039 * 95.73343 * 3 2 1 13 13 H 1.08998 * 109.47337 * 180.08984 * 12 3 2 14 14 C 1.53004 * 109.47248 * 60.08877 * 12 3 2 15 15 C 1.52996 * 109.47122 * 300.09006 * 12 3 2 16 16 N 1.46506 * 109.46971 * 305.00129 * 15 12 3 17 17 C 1.34774 * 119.99993 * 180.02562 * 16 15 12 18 18 O 1.21584 * 120.00303 * 359.97438 * 17 16 15 19 19 C 1.47602 * 120.00031 * 179.72280 * 17 16 15 20 20 C 1.39732 * 120.08567 * 359.72367 * 19 17 16 21 21 C 1.37707 * 119.91102 * 179.76792 * 20 19 17 22 22 C 1.50700 * 119.95977 * 180.25415 * 21 20 19 23 23 C 1.39000 * 120.08448 * 0.53257 * 21 20 19 24 24 O 1.35715 * 119.91039 * 179.72406 * 23 21 20 25 25 C 1.42901 * 116.99435 * 269.97558 * 24 23 21 26 26 C 1.38994 * 120.18098 * 359.69616 * 23 21 20 27 27 C 1.50700 * 119.95941 * 180.02562 * 26 23 21 28 28 C 1.37704 * 120.08575 * 0.04878 * 26 23 21 29 29 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47464 * 300.00009 * 1 2 3 31 31 H 1.09003 * 109.47370 * 59.99688 * 1 2 3 32 32 H 1.09001 * 109.47464 * 239.99991 * 2 1 3 33 33 H 1.08996 * 109.46818 * 119.99938 * 2 1 3 34 34 H 0.97005 * 120.00544 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.46821 * 180.02562 * 14 12 3 36 36 H 1.08998 * 109.47039 * 300.00290 * 14 12 3 37 37 H 1.08997 * 109.46788 * 59.99737 * 14 12 3 38 38 H 1.09001 * 109.47446 * 185.00542 * 15 12 3 39 39 H 1.09005 * 109.47249 * 64.99640 * 15 12 3 40 40 H 0.96992 * 119.99950 * 359.97438 * 16 15 12 41 41 H 1.08002 * 120.04790 * 0.02562 * 20 19 17 42 42 H 1.09000 * 109.46845 * 270.27743 * 22 21 20 43 43 H 1.08999 * 109.46657 * 30.27093 * 22 21 20 44 44 H 1.08994 * 109.47171 * 150.27747 * 22 21 20 45 45 H 1.08990 * 109.47518 * 299.99575 * 25 24 23 46 46 H 1.09003 * 109.47470 * 60.00568 * 25 24 23 47 47 H 1.09004 * 109.46843 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.46863 * 270.02330 * 27 26 23 49 49 H 1.08999 * 109.47131 * 30.02094 * 27 26 23 50 50 H 1.09000 * 109.47105 * 150.02666 * 27 26 23 51 51 H 1.08004 * 120.04715 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4370 1.8810 -1.9831 6 6 3.1500 2.9986 -1.3439 7 7 4.1870 2.9918 -0.5333 8 14 3.0444 4.2631 -2.7147 9 1 2.3487 5.4767 -2.2163 10 1 4.4138 4.6256 -3.1604 11 1 2.2869 3.6924 -3.8573 12 6 2.3819 2.0296 1.2624 13 1 2.7188 3.0471 1.0644 14 6 3.5077 1.2413 1.9348 15 6 1.1630 2.0667 2.1863 16 7 0.0465 2.7172 1.4958 17 6 -1.1387 2.8636 2.1205 18 8 -1.2816 2.4556 3.2569 19 6 -2.2617 3.5245 1.4271 20 6 -2.0963 4.0040 0.1251 21 6 -3.1478 4.6157 -0.5202 22 6 -2.9723 5.1282 -1.9265 23 6 -4.3693 4.7662 0.1260 24 8 -5.4015 5.3746 -0.5113 25 6 -5.5144 6.7908 -0.3578 26 6 -4.5365 4.2948 1.4228 27 6 -5.8631 4.4602 2.1184 28 6 -3.4914 3.6774 2.0730 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 4.8966 3.6432 -0.6480 35 1 3.7779 1.7235 2.8743 36 1 3.1708 0.2238 2.1328 37 1 4.3761 1.2149 1.2766 38 1 1.4079 2.6268 3.0887 39 1 0.8802 1.0490 2.4557 40 1 0.1606 3.0431 0.5895 41 1 -1.1462 3.8914 -0.3760 42 1 -2.6226 6.1601 -1.8961 43 1 -2.2407 4.5119 -2.4490 44 1 -3.9265 5.0832 -2.4513 45 1 -5.6381 7.0332 0.6976 46 1 -4.6123 7.2706 -0.7375 47 1 -6.3788 7.1491 -0.9169 48 1 -5.8759 5.4086 2.6556 49 1 -6.6644 4.4501 1.3797 50 1 -6.0083 3.6415 2.8233 51 1 -3.6219 3.3117 3.0808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153521531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:33 Heat of formation + Delta-G solvation = -38.814052 kcal Electronic energy + Delta-G solvation = -30399.290023 eV Core-core repulsion = 26492.412191 eV Total energy + Delta-G solvation = -3906.877832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.51962 -39.18296 -37.25966 -36.68155 -34.00379 -33.44583 -31.93133 -31.64858 -30.75790 -28.21921 -28.17471 -26.83613 -26.54717 -25.33373 -23.95756 -22.83931 -21.70047 -20.97071 -19.72705 -19.22322 -17.76454 -17.24668 -16.82225 -16.56914 -15.84684 -15.27179 -14.90577 -14.79137 -14.17915 -14.09317 -14.01501 -13.90329 -13.55588 -13.37138 -13.30391 -13.11276 -12.83109 -12.69843 -12.38707 -12.33136 -12.16855 -11.99475 -11.83425 -11.66337 -11.53866 -11.43400 -11.28296 -11.07689 -10.97072 -10.84394 -10.68798 -10.31326 -10.10311 -10.08195 -9.64687 -9.50950 -9.44652 -8.70260 -8.65490 -8.54101 -8.32551 -6.69515 -5.91117 -3.39940 0.75996 1.27955 2.88167 3.27245 3.36410 3.37404 3.59775 3.71399 3.97998 4.38653 4.62746 4.69899 4.96697 5.02453 5.06561 5.23054 5.24057 5.27407 5.29242 5.37301 5.38530 5.46169 5.49818 5.57181 5.65636 5.73618 5.88386 5.96436 6.06064 6.12936 6.17732 6.25135 6.28306 6.37140 6.38524 6.42856 6.48945 6.55177 6.59386 6.62554 6.68512 6.83071 6.91532 7.04987 7.16960 7.36100 7.46505 7.56029 7.74541 8.12957 8.40452 8.69801 9.13377 9.74838 10.32366 11.15426 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.004003 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.280817 B = 6993.646504 C = 8487.491026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.264 4.264 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.694 5.694 17 C 0.548 3.452 18 O -0.557 6.557 19 C -0.123 4.123 20 C -0.076 4.076 21 C -0.105 4.105 22 C -0.114 4.114 23 C 0.108 3.892 24 O -0.334 6.334 25 C 0.036 3.964 26 C -0.112 4.112 27 C -0.109 4.109 28 C -0.057 4.057 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.255 0.745 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.410 0.590 41 H 0.138 0.862 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.393 5.522 1.809 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.394 4.394 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.335 3.665 18 O -0.437 6.437 19 C -0.126 4.126 20 C -0.095 4.095 21 C -0.105 4.105 22 C -0.170 4.170 23 C 0.064 3.936 24 O -0.250 6.250 25 C -0.058 4.058 26 C -0.113 4.113 27 C -0.166 4.166 28 C -0.076 4.076 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.248 0.752 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.409 5.241 2.466 16.462 hybrid contribution 0.308 0.945 -1.056 1.450 sum -15.101 6.185 1.410 16.380 Atomic orbital electron populations 1.22451 0.99969 0.99059 1.01545 1.20755 0.91668 0.87393 0.98738 1.43895 1.75980 1.08324 1.02261 1.19102 1.08640 1.18226 0.93398 0.91806 1.25149 0.94513 1.01333 0.97768 1.70004 1.07817 1.35845 1.39535 0.86432 0.77075 0.81960 0.82175 1.21329 1.21740 1.20325 1.20500 0.88882 0.99540 0.84199 0.88247 1.22020 1.01106 0.97980 0.99246 1.22214 0.88011 0.96366 0.95840 1.45929 1.10785 1.58591 1.19095 1.18153 0.82849 0.79598 0.85898 1.90722 1.83390 1.51335 1.18296 1.20107 0.95144 1.02297 0.95043 1.21279 0.98856 0.95791 0.93542 1.20090 0.92241 1.00576 0.97612 1.20734 1.03161 1.01164 0.91988 1.18516 0.87029 0.97481 0.90558 1.85904 1.46663 1.21118 1.71363 1.22973 1.02164 0.79343 1.01337 1.20073 0.96853 1.00943 0.93419 1.20681 0.93536 1.02190 1.00168 1.21006 0.90609 0.96091 0.99942 0.94833 0.92980 0.93469 0.94102 0.94498 0.93532 0.94823 0.95118 0.90261 0.92795 0.92644 0.75167 0.84470 0.91302 0.90712 0.90886 0.93547 0.93422 0.88876 0.91467 0.90895 0.91207 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.86 37.16 0.37 -2.76 16 2 C 0.14 2.83 5.67 -4.04 -0.02 2.81 16 3 N -0.58 -12.92 1.85 -165.67 -0.31 -13.23 16 4 C -0.26 -6.42 9.26 -15.06 -0.14 -6.56 16 5 H 0.06 1.56 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.23 10.60 55.49 0.59 -22.64 16 8 Si 0.89 19.85 29.59 -169.99 -5.03 14.83 16 9 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 C 0.18 3.74 1.92 -67.93 -0.13 3.60 16 13 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 14 C -0.14 -2.93 9.05 37.16 0.34 -2.59 16 15 C 0.10 1.95 4.34 -4.04 -0.02 1.94 16 16 N -0.69 -12.84 3.94 -61.32 -0.24 -13.08 16 17 C 0.55 10.12 7.53 -12.44 -0.09 10.02 16 18 O -0.56 -11.66 16.34 5.29 0.09 -11.57 16 19 C -0.12 -1.96 5.88 -104.96 -0.62 -2.58 16 20 C -0.08 -1.12 9.18 -39.22 -0.36 -1.48 16 21 C -0.10 -1.40 5.89 -104.53 -0.62 -2.02 16 22 C -0.11 -1.30 9.78 36.01 0.35 -0.95 16 23 C 0.11 1.39 5.67 -39.02 -0.22 1.17 16 24 O -0.33 -3.83 8.47 -18.85 -0.16 -3.99 16 25 C 0.04 0.29 11.13 101.05 1.12 1.42 16 26 C -0.11 -1.42 5.89 -104.54 -0.62 -2.04 16 27 C -0.11 -1.06 9.78 36.01 0.35 -0.70 16 28 C -0.06 -0.83 9.23 -39.22 -0.36 -1.19 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.99 4.99 -51.93 -0.26 0.73 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 34 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 37 H 0.08 1.82 7.39 -51.93 -0.38 1.44 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.10 7.05 -51.93 -0.37 0.73 16 40 H 0.41 7.67 5.92 -40.82 -0.24 7.43 16 41 H 0.14 2.03 6.40 -52.49 -0.34 1.70 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 50 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 51 H 0.14 1.94 7.64 -52.48 -0.40 1.54 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -27.90 404.35 -8.09 -35.99 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.38 Total: 9.27 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.75 Total: -1.66 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.04 Total: -48.96 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.07 Total: -15.56 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -27.90 -8.09 -35.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153521531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.826 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds